Wall clock time and date at job start Wed Apr 1 2020 05:19:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34228 * 116.99933 * 2 1
4 4 O 1.20835 * 120.00115 * 0.02562 * 3 2 1
5 5 C 1.50699 * 120.00182 * 180.02562 * 3 2 1
6 6 C 1.53006 * 110.01705 * 300.70097 * 5 3 2
7 7 N 1.46500 * 109.46998 * 58.60808 * 6 5 3
8 8 S 1.65598 * 120.00283 * 165.00335 * 7 6 5
9 9 O 1.42094 * 104.27707 * 181.07506 * 8 7 6
10 10 O 1.42105 * 104.27318 * 308.92704 * 8 7 6
11 11 C 1.81396 * 104.44859 * 64.99645 * 8 7 6
12 12 C 1.53000 * 109.46947 * 180.02562 * 11 8 7
13 13 C 1.52998 * 109.47400 * 300.00492 * 12 11 8
14 14 C 1.53004 * 109.47188 * 59.99974 * 12 11 8
15 15 C 1.50698 * 109.47501 * 179.97438 * 12 11 8
16 16 H 1.08003 * 119.99749 * 0.02562 * 15 12 11
17 17 C 1.37878 * 120.00578 * 179.97438 * 15 12 11
18 18 N 1.31514 * 119.99727 * 0.02562 * 17 15 12
19 19 Si 1.86799 * 120.00014 * 180.02562 * 17 15 12
20 20 H 1.48497 * 109.46829 * 90.00931 * 19 17 15
21 21 H 1.48506 * 109.46741 * 210.00288 * 19 17 15
22 22 H 1.48499 * 109.47315 * 330.00382 * 19 17 15
23 23 C 1.54261 * 110.07306 * 62.11764 * 5 3 2
24 24 C 1.54890 * 104.19514 * 95.70127 * 23 5 3
25 25 C 1.54893 * 102.75075 * 37.93866 * 24 23 5
26 26 C 1.53873 * 110.03403 * 179.31169 * 5 3 2
27 27 H 1.08998 * 109.47171 * 299.99697 * 1 2 3
28 28 H 1.08999 * 109.46922 * 60.00066 * 1 2 3
29 29 H 1.08994 * 109.46818 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.46955 * 178.61033 * 6 5 3
31 31 H 1.09000 * 109.47050 * 298.60862 * 6 5 3
32 32 H 0.97004 * 119.99709 * 345.00122 * 7 6 5
33 33 H 1.09001 * 109.47447 * 299.99994 * 11 8 7
34 34 H 1.08995 * 109.47186 * 60.00947 * 11 8 7
35 35 H 1.09001 * 109.47525 * 59.99483 * 13 12 11
36 36 H 1.08997 * 109.47484 * 180.02562 * 13 12 11
37 37 H 1.09006 * 109.46844 * 299.99805 * 13 12 11
38 38 H 1.09003 * 109.46865 * 59.99764 * 14 12 11
39 39 H 1.08996 * 109.47327 * 179.97438 * 14 12 11
40 40 H 1.08997 * 109.47200 * 300.00377 * 14 12 11
41 41 H 0.96993 * 120.00010 * 179.97438 * 18 17 15
42 42 H 1.09003 * 110.48954 * 214.37565 * 23 5 3
43 43 H 1.09001 * 110.48990 * 337.02025 * 23 5 3
44 44 H 1.09007 * 110.75164 * 279.62848 * 24 23 5
45 45 H 1.09000 * 110.76074 * 156.26093 * 24 23 5
46 46 H 1.08998 * 110.48926 * 203.37855 * 25 24 23
47 47 H 1.09001 * 110.48235 * 80.73548 * 25 24 23
48 48 H 1.09002 * 110.03347 * 359.95231 * 26 5 3
49 49 H 1.09003 * 110.03167 * 121.38309 * 26 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2094 0.0005
5 6 3.5663 1.2749 -0.0006
6 6 4.1283 0.5691 1.2352
7 7 3.6921 -0.8294 1.2394
8 16 4.4339 -1.9252 2.2349
9 8 3.7784 -3.1542 1.9535
10 8 5.8199 -1.7569 1.9703
11 6 4.0324 -1.3586 3.9107
12 6 4.6697 -2.3007 4.9340
13 6 4.1271 -3.7168 4.7307
14 6 6.1882 -2.3048 4.7471
15 6 4.3367 -1.8297 6.3262
16 1 3.7308 -0.9468 6.4671
17 6 4.8047 -2.5263 7.4201
18 7 5.5421 -3.6017 7.2486
19 14 4.3913 -1.9427 9.1458
20 1 3.1266 -2.5791 9.5938
21 1 5.4897 -2.3188 10.0719
22 1 4.2292 -0.4666 9.1436
23 6 4.1300 0.6263 -1.2816
24 6 4.3380 1.8168 -2.2503
25 6 4.8388 2.9401 -1.3088
26 6 4.0170 2.7461 -0.0178
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 5.2172 0.6101 1.2132
31 1 3.7641 1.0660 2.1344
32 1 2.9686 -1.1136 0.6589
33 1 4.4194 -0.3499 4.0557
34 1 2.9506 -1.3554 4.0437
35 1 4.3683 -4.0573 3.7237
36 1 4.5807 -4.3879 5.4600
37 1 3.0452 -3.7139 4.8638
38 1 6.5748 -1.2960 4.8919
39 1 6.6423 -2.9757 5.4764
40 1 6.4295 -2.6453 3.7401
41 1 5.8717 -4.0916 8.0181
42 1 5.0797 0.1334 -1.0736
43 1 3.4141 -0.0830 -1.6970
44 1 3.3971 2.0995 -2.7225
45 1 5.0914 1.5772 -3.0008
46 1 4.6402 3.9195 -1.7440
47 1 5.9030 2.8209 -1.1051
48 1 3.1472 3.4030 -0.0266
49 1 4.6361 2.9572 0.8542
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885394865.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:03
Heat of formation + Delta-G solvation = -171.481925 kcal
Electronic energy + Delta-G solvation = -30922.496337 eV
Core-core repulsion = 26783.531648 eV
Total energy + Delta-G solvation = -4138.964689 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.165 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.26322 -38.47890 -36.70364 -36.50324 -36.27002 -35.30276 -34.72950 -31.66834
-30.21455 -29.16018 -27.81031 -26.62197 -25.71419 -25.24267 -24.67040 -23.04989
-21.11384 -19.92602 -19.46784 -18.73209 -17.77924 -17.17788 -17.10444 -16.65122
-16.03740 -15.87370 -15.36516 -15.24233 -14.82824 -14.69583 -14.41840 -14.25671
-13.69266 -13.48599 -13.21706 -12.99231 -12.86349 -12.50581 -12.32960 -12.25477
-12.06796 -11.73703 -11.49796 -11.43186 -11.42033 -11.36521 -11.23700 -11.07363
-11.06361 -10.96754 -10.90371 -10.79451 -10.69785 -10.48468 -10.37847 -10.27423
-10.11078 -9.65756 -9.63341 -9.25440 -8.67169 -8.40391 -6.03745 -4.15682
0.87448 1.93969 2.40063 3.20154 3.25396 3.32764 3.34790 4.07054
4.13566 4.28375 4.35330 4.40576 4.58126 4.79694 4.86416 4.90096
4.97464 5.01906 5.07204 5.21475 5.22703 5.32364 5.33852 5.35779
5.46414 5.58309 5.62809 5.64465 5.70333 5.77384 5.87321 5.88411
5.96362 6.04015 6.19311 6.37864 6.70365 6.79816 6.90947 7.03379
7.23748 7.31700 7.49089 7.50738 7.67641 7.98213 8.09556 8.32945
8.82779 9.49757 10.97565
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.015529 B = 0.003193 C = 0.003134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1802.633704 B = 8768.213167 C = 8932.242179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.355 6.355
3 C 0.476 3.524
4 O -0.503 6.503
5 C -0.060 4.060
6 C 0.129 3.871
7 N -1.130 6.130
8 S 2.594 3.406
9 O -0.963 6.963
10 O -0.964 6.964
11 C -0.584 4.584
12 C 0.082 3.918
13 C -0.164 4.164
14 C -0.163 4.163
15 C -0.502 4.502
16 H 0.058 0.942
17 C 0.065 3.935
18 N -0.883 5.883
19 Si 0.895 3.105
20 H -0.281 1.281
21 H -0.285 1.285
22 H -0.275 1.275
23 C -0.114 4.114
24 C -0.128 4.128
25 C -0.122 4.122
26 C -0.119 4.119
27 H 0.065 0.935
28 H 0.062 0.938
29 H 0.105 0.895
30 H 0.100 0.900
31 H 0.070 0.930
32 H 0.418 0.582
33 H 0.116 0.884
34 H 0.118 0.882
35 H 0.028 0.972
36 H 0.095 0.905
37 H 0.036 0.964
38 H 0.036 0.964
39 H 0.095 0.905
40 H 0.028 0.972
41 H 0.262 0.738
42 H 0.092 0.908
43 H 0.077 0.923
44 H 0.065 0.935
45 H 0.074 0.926
46 H 0.070 0.930
47 H 0.073 0.927
48 H 0.093 0.907
49 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.111 10.556 -17.172 20.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.271 6.271
3 C 0.319 3.681
4 O -0.390 6.390
5 C -0.063 4.063
6 C 0.002 3.998
7 N -0.891 5.891
8 S 2.692 3.308
9 O -0.953 6.953
10 O -0.954 6.954
11 C -0.717 4.717
12 C 0.079 3.921
13 C -0.221 4.221
14 C -0.221 4.221
15 C -0.541 4.541
16 H 0.076 0.924
17 C -0.137 4.137
18 N -0.521 5.521
19 Si 0.723 3.277
20 H -0.207 1.207
21 H -0.211 1.211
22 H -0.200 1.200
23 C -0.152 4.152
24 C -0.165 4.165
25 C -0.160 4.160
26 C -0.157 4.157
27 H 0.084 0.916
28 H 0.081 0.919
29 H 0.123 0.877
30 H 0.118 0.882
31 H 0.088 0.912
32 H 0.256 0.744
33 H 0.135 0.865
34 H 0.137 0.863
35 H 0.046 0.954
36 H 0.114 0.886
37 H 0.055 0.945
38 H 0.055 0.945
39 H 0.113 0.887
40 H 0.047 0.953
41 H 0.073 0.927
42 H 0.111 0.889
43 H 0.095 0.905
44 H 0.084 0.916
45 H 0.093 0.907
46 H 0.089 0.911
47 H 0.091 0.909
48 H 0.112 0.888
49 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -4.598 10.020 -17.285 20.502
hybrid contribution -1.257 0.733 1.267 1.930
sum -5.856 10.753 -16.017 20.161
Atomic orbital electron populations
1.23352 0.75882 1.04196 1.02592 1.86369 1.23757 1.33246 1.83777
1.23530 0.91616 0.81337 0.71627 1.90629 1.66812 1.36233 1.45290
1.21495 0.87123 0.99017 0.98616 1.21389 1.00863 0.81512 0.95997
1.56030 1.53316 1.20474 1.59314 1.05576 0.74381 0.73644 0.77177
1.93552 1.76241 1.41314 1.84217 1.93535 1.31896 1.85871 1.84106
1.30539 1.10593 1.11284 1.19329 1.17929 0.91874 0.89863 0.92384
1.22272 1.00007 0.99634 1.00212 1.22269 0.97739 1.01778 1.00301
1.20943 1.32637 1.11513 0.89036 0.92356 1.24934 0.94823 0.94871
0.99090 1.69799 1.34779 1.17312 1.30256 0.86543 0.78030 0.79004
0.84099 1.20674 1.21120 1.19969 1.22539 1.02585 0.97845 0.92184
1.22564 1.01398 0.94927 0.97654 1.22363 0.99940 0.98917 0.94769
1.22338 1.01638 0.92261 0.99468 0.91603 0.91876 0.87666 0.88220
0.91173 0.74431 0.86537 0.86328 0.95352 0.88646 0.94513 0.94493
0.88679 0.95280 0.92749 0.88904 0.90456 0.91575 0.90712 0.91134
0.90855 0.88835 0.89895
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 10.56 101.05 1.07 1.35 16
2 O -0.36 -3.91 7.63 -39.25 -0.30 -4.21 16
3 C 0.48 5.56 6.49 36.00 0.23 5.79 16
4 O -0.50 -6.75 14.96 -18.76 -0.28 -7.03 16
5 C -0.06 -0.61 0.65 -154.54 -0.10 -0.71 16
6 C 0.13 1.49 4.66 -4.04 -0.02 1.47 16
7 N -1.13 -15.44 5.39 -10.61 -0.06 -15.49 16
8 S 2.59 47.10 4.49 -107.50 -0.48 46.62 16
9 O -0.96 -20.00 15.70 -57.54 -0.90 -20.91 16
10 O -0.96 -19.42 15.12 -57.54 -0.87 -20.29 16
11 C -0.58 -11.24 5.01 37.16 0.19 -11.06 16
12 C 0.08 1.97 0.52 -155.66 -0.08 1.88 16
13 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16
14 C -0.16 -3.96 7.77 37.16 0.29 -3.68 16
15 C -0.50 -13.10 8.01 -34.44 -0.28 -13.38 16
16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16
17 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16
18 N -0.88 -24.00 9.35 55.43 0.52 -23.48 16
19 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16
20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
21 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16
22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
23 C -0.11 -1.05 5.56 -25.07 -0.14 -1.19 16
24 C -0.13 -0.98 6.91 -24.74 -0.17 -1.15 16
25 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16
26 C -0.12 -1.05 6.05 -25.62 -0.16 -1.20 16
27 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16
28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16
29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.10 1.09 7.67 -51.93 -0.40 0.69 16
31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
32 H 0.42 5.35 5.89 -34.47 -0.20 5.15 16
33 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16
34 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16
35 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16
36 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16
37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16
38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16
39 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16
40 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16
41 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16
42 H 0.09 0.87 7.84 -51.93 -0.41 0.46 16
43 H 0.08 0.70 7.64 -51.93 -0.40 0.30 16
44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
48 H 0.09 0.93 6.40 -51.93 -0.33 0.60 16
49 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16
LS Contribution 385.34 15.07 5.81 5.81
Total: -1.00 -32.53 385.34 -8.68 -41.21
By element:
Atomic # 1 Polarization: 15.23 SS G_CDS: -7.95 Total: 7.28 kcal
Atomic # 6 Polarization: -25.91 SS G_CDS: 0.86 Total: -25.05 kcal
Atomic # 7 Polarization: -39.44 SS G_CDS: 0.46 Total: -38.97 kcal
Atomic # 8 Polarization: -50.09 SS G_CDS: -2.35 Total: -52.44 kcal
Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal
Atomic # 16 Polarization: 47.10 SS G_CDS: -0.48 Total: 46.62 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -32.53 -8.68 -41.21 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885394865.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -130.272 kcal
(2) G-P(sol) polarization free energy of solvation -32.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.807 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal
(6) G-S(sol) free energy of system = (1) + (5) -171.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds