Wall clock time and date at job start Wed Apr 1 2020 05:19:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34228 * 116.99933 * 2 1
4 4 O 1.20835 * 120.00115 * 0.02562 * 3 2 1
5 5 C 1.50699 * 120.00182 * 180.02562 * 3 2 1
6 6 C 1.53006 * 110.01705 * 300.70097 * 5 3 2
7 7 N 1.46500 * 109.46998 * 58.60808 * 6 5 3
8 8 S 1.65598 * 120.00283 * 165.00335 * 7 6 5
9 9 O 1.42094 * 104.27707 * 181.07506 * 8 7 6
10 10 O 1.42105 * 104.27318 * 308.92704 * 8 7 6
11 11 C 1.81396 * 104.44859 * 64.99645 * 8 7 6
12 12 C 1.53000 * 109.46947 * 180.02562 * 11 8 7
13 13 C 1.52998 * 109.47400 * 300.00492 * 12 11 8
14 14 C 1.53004 * 109.47188 * 59.99974 * 12 11 8
15 15 C 1.50698 * 109.47501 * 179.97438 * 12 11 8
16 16 H 1.08003 * 119.99749 * 0.02562 * 15 12 11
17 17 C 1.37878 * 120.00578 * 179.97438 * 15 12 11
18 18 N 1.31514 * 119.99727 * 0.02562 * 17 15 12
19 19 Si 1.86799 * 120.00014 * 180.02562 * 17 15 12
20 20 H 1.48497 * 109.46829 * 90.00931 * 19 17 15
21 21 H 1.48506 * 109.46741 * 210.00288 * 19 17 15
22 22 H 1.48499 * 109.47315 * 330.00382 * 19 17 15
23 23 C 1.54261 * 110.07306 * 62.11764 * 5 3 2
24 24 C 1.54890 * 104.19514 * 95.70127 * 23 5 3
25 25 C 1.54893 * 102.75075 * 37.93866 * 24 23 5
26 26 C 1.53873 * 110.03403 * 179.31169 * 5 3 2
27 27 H 1.08998 * 109.47171 * 299.99697 * 1 2 3
28 28 H 1.08999 * 109.46922 * 60.00066 * 1 2 3
29 29 H 1.08994 * 109.46818 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.46955 * 178.61033 * 6 5 3
31 31 H 1.09000 * 109.47050 * 298.60862 * 6 5 3
32 32 H 0.97004 * 119.99709 * 345.00122 * 7 6 5
33 33 H 1.09001 * 109.47447 * 299.99994 * 11 8 7
34 34 H 1.08995 * 109.47186 * 60.00947 * 11 8 7
35 35 H 1.09001 * 109.47525 * 59.99483 * 13 12 11
36 36 H 1.08997 * 109.47484 * 180.02562 * 13 12 11
37 37 H 1.09006 * 109.46844 * 299.99805 * 13 12 11
38 38 H 1.09003 * 109.46865 * 59.99764 * 14 12 11
39 39 H 1.08996 * 109.47327 * 179.97438 * 14 12 11
40 40 H 1.08997 * 109.47200 * 300.00377 * 14 12 11
41 41 H 0.96993 * 120.00010 * 179.97438 * 18 17 15
42 42 H 1.09003 * 110.48954 * 214.37565 * 23 5 3
43 43 H 1.09001 * 110.48990 * 337.02025 * 23 5 3
44 44 H 1.09007 * 110.75164 * 279.62848 * 24 23 5
45 45 H 1.09000 * 110.76074 * 156.26093 * 24 23 5
46 46 H 1.08998 * 110.48926 * 203.37855 * 25 24 23
47 47 H 1.09001 * 110.48235 * 80.73548 * 25 24 23
48 48 H 1.09002 * 110.03347 * 359.95231 * 26 5 3
49 49 H 1.09003 * 110.03167 * 121.38309 * 26 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2094 0.0005
5 6 3.5663 1.2749 -0.0006
6 6 4.1283 0.5691 1.2352
7 7 3.6921 -0.8294 1.2394
8 16 4.4339 -1.9252 2.2349
9 8 3.7784 -3.1542 1.9535
10 8 5.8199 -1.7569 1.9703
11 6 4.0324 -1.3586 3.9107
12 6 4.6697 -2.3007 4.9340
13 6 4.1271 -3.7168 4.7307
14 6 6.1882 -2.3048 4.7471
15 6 4.3367 -1.8297 6.3262
16 1 3.7308 -0.9468 6.4671
17 6 4.8047 -2.5263 7.4201
18 7 5.5421 -3.6017 7.2486
19 14 4.3913 -1.9427 9.1458
20 1 3.1266 -2.5791 9.5938
21 1 5.4897 -2.3188 10.0719
22 1 4.2292 -0.4666 9.1436
23 6 4.1300 0.6263 -1.2816
24 6 4.3380 1.8168 -2.2503
25 6 4.8388 2.9401 -1.3088
26 6 4.0170 2.7461 -0.0178
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 5.2172 0.6101 1.2132
31 1 3.7641 1.0660 2.1344
32 1 2.9686 -1.1136 0.6589
33 1 4.4194 -0.3499 4.0557
34 1 2.9506 -1.3554 4.0437
35 1 4.3683 -4.0573 3.7237
36 1 4.5807 -4.3879 5.4600
37 1 3.0452 -3.7139 4.8638
38 1 6.5748 -1.2960 4.8919
39 1 6.6423 -2.9757 5.4764
40 1 6.4295 -2.6453 3.7401
41 1 5.8717 -4.0916 8.0181
42 1 5.0797 0.1334 -1.0736
43 1 3.4141 -0.0830 -1.6970
44 1 3.3971 2.0995 -2.7225
45 1 5.0914 1.5772 -3.0008
46 1 4.6402 3.9195 -1.7440
47 1 5.9030 2.8209 -1.1051
48 1 3.1472 3.4030 -0.0266
49 1 4.6361 2.9572 0.8542
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885394865.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:02
Heat of formation + Delta-G solvation = -191.788056 kcal
Electronic energy + Delta-G solvation = -30923.376876 eV
Core-core repulsion = 26783.531648 eV
Total energy + Delta-G solvation = -4139.845228 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.165 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.10593 -39.24438 -38.10768 -38.05722 -37.59186 -36.85583 -35.70525 -33.61947
-31.05696 -29.82434 -28.52333 -28.28027 -27.66418 -27.23777 -25.57613 -23.82605
-21.76688 -21.37330 -20.66454 -20.07048 -18.89857 -18.38501 -18.00188 -17.85609
-17.47791 -17.04042 -16.88201 -16.58867 -16.19179 -15.61820 -15.42988 -15.21282
-14.94948 -14.62630 -14.40359 -14.36572 -14.26358 -13.85362 -13.76170 -13.54774
-13.04757 -13.00562 -12.93826 -12.88068 -12.76202 -12.54858 -12.47919 -12.24322
-12.15053 -12.14571 -12.03632 -12.00317 -11.96013 -11.88550 -11.77134 -11.54712
-11.53412 -11.33822 -11.26579 -10.68503 -10.40329 -10.31162 -8.01943 -6.20301
-0.58383 1.05520 1.44203 1.46407 1.54669 1.61293 1.92873 2.44895
2.87872 3.20333 3.29766 3.30896 3.48032 3.57256 3.84749 4.02553
4.18829 4.23385 4.26047 4.27750 4.32130 4.40586 4.48110 4.56790
4.62257 4.67120 4.69501 4.75400 4.83614 4.89158 4.90583 4.93789
5.01775 5.05224 5.11539 5.16581 5.23226 5.26872 5.33850 5.41037
5.50498 5.53499 5.66125 6.00203 6.13408 6.17191 6.36031 6.62700
6.84408 7.47939 8.97812
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.015529 B = 0.003193 C = 0.003134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1802.633704 B = 8768.213167 C = 8932.242179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.363 6.363
3 C 0.475 3.525
4 O -0.524 6.524
5 C -0.058 4.058
6 C 0.117 3.883
7 N -1.114 6.114
8 S 2.617 3.383
9 O -0.991 6.991
10 O -0.984 6.984
11 C -0.590 4.590
12 C 0.069 3.931
13 C -0.160 4.160
14 C -0.159 4.159
15 C -0.517 4.517
16 H 0.062 0.938
17 C 0.018 3.982
18 N -0.907 5.907
19 Si 0.953 3.047
20 H -0.279 1.279
21 H -0.287 1.287
22 H -0.267 1.267
23 C -0.118 4.118
24 C -0.125 4.125
25 C -0.120 4.120
26 C -0.119 4.119
27 H 0.062 0.938
28 H 0.069 0.931
29 H 0.127 0.873
30 H 0.109 0.891
31 H 0.084 0.916
32 H 0.424 0.576
33 H 0.138 0.862
34 H 0.133 0.867
35 H 0.033 0.967
36 H 0.071 0.929
37 H 0.038 0.962
38 H 0.042 0.958
39 H 0.069 0.931
40 H 0.034 0.966
41 H 0.261 0.739
42 H 0.092 0.908
43 H 0.075 0.925
44 H 0.062 0.938
45 H 0.087 0.913
46 H 0.079 0.921
47 H 0.082 0.918
48 H 0.081 0.919
49 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.484 12.103 -17.881 22.277
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.279 6.279
3 C 0.319 3.681
4 O -0.413 6.413
5 C -0.060 4.060
6 C -0.009 4.009
7 N -0.879 5.879
8 S 2.714 3.286
9 O -0.981 6.981
10 O -0.974 6.974
11 C -0.722 4.722
12 C 0.067 3.933
13 C -0.218 4.218
14 C -0.217 4.217
15 C -0.556 4.556
16 H 0.080 0.920
17 C -0.181 4.181
18 N -0.546 5.546
19 Si 0.779 3.221
20 H -0.205 1.205
21 H -0.212 1.212
22 H -0.192 1.192
23 C -0.155 4.155
24 C -0.162 4.162
25 C -0.157 4.157
26 C -0.157 4.157
27 H 0.081 0.919
28 H 0.088 0.912
29 H 0.145 0.855
30 H 0.127 0.873
31 H 0.102 0.898
32 H 0.264 0.736
33 H 0.156 0.844
34 H 0.151 0.849
35 H 0.052 0.948
36 H 0.089 0.911
37 H 0.057 0.943
38 H 0.061 0.939
39 H 0.088 0.912
40 H 0.053 0.947
41 H 0.071 0.929
42 H 0.110 0.890
43 H 0.094 0.906
44 H 0.081 0.919
45 H 0.106 0.894
46 H 0.097 0.903
47 H 0.101 0.899
48 H 0.100 0.900
49 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -4.980 11.563 -17.990 21.958
hybrid contribution -1.187 0.260 1.428 1.875
sum -6.167 11.823 -16.562 21.263
Atomic orbital electron populations
1.23598 0.74645 1.05745 1.02802 1.86350 1.25091 1.33011 1.83488
1.23828 0.92163 0.81167 0.70967 1.90619 1.67404 1.36893 1.46385
1.21554 0.86187 0.99881 0.98412 1.21717 1.01673 0.80094 0.97430
1.55605 1.53224 1.21018 1.58083 1.04654 0.73812 0.73366 0.76816
1.93507 1.76661 1.43480 1.84490 1.93505 1.33369 1.86231 1.84251
1.30492 1.11333 1.11310 1.19103 1.17925 0.91840 0.90382 0.93202
1.22209 0.99884 0.99989 0.99716 1.22193 0.98208 1.01441 0.99823
1.21292 1.32449 1.11563 0.90279 0.92003 1.25653 0.94903 0.95073
1.02467 1.69939 1.35541 1.18163 1.30929 0.85642 0.77559 0.78819
0.80099 1.20543 1.21235 1.19184 1.22593 1.02360 0.98429 0.92129
1.22562 1.01702 0.94302 0.97666 1.22385 1.00194 0.99260 0.93892
1.22367 1.01574 0.90890 1.00884 0.91908 0.91224 0.85523 0.87313
0.89759 0.73645 0.84359 0.84851 0.94826 0.91056 0.94312 0.93891
0.91185 0.94676 0.92949 0.88981 0.90627 0.91924 0.89390 0.90254
0.89890 0.90003 0.88703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 10.56 113.37 1.20 1.59 16
2 O -0.36 -7.46 7.63 -51.40 -0.39 -7.85 16
3 C 0.48 10.42 6.49 71.24 0.46 10.88 16
4 O -0.52 -13.55 14.96 21.94 0.33 -13.22 16
5 C -0.06 -1.07 0.65 -52.20 -0.03 -1.10 16
6 C 0.12 2.42 4.66 86.38 0.40 2.82 16
7 N -1.11 -28.34 5.39 -187.49 -1.01 -29.35 16
8 S 2.62 91.31 4.49 -56.49 -0.25 91.05 16
9 O -0.99 -40.29 15.70 -127.65 -2.00 -42.29 16
10 O -0.98 -38.28 15.12 -127.65 -1.93 -40.21 16
11 C -0.59 -21.73 5.01 71.98 0.36 -21.37 16
12 C 0.07 3.25 0.52 -52.93 -0.03 3.23 16
13 C -0.16 -7.90 7.78 71.98 0.56 -7.34 16
14 C -0.16 -7.70 7.77 71.98 0.56 -7.14 16
15 C -0.52 -26.61 8.01 25.60 0.21 -26.40 16
16 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16
17 C 0.02 0.97 5.15 84.65 0.44 1.41 16
18 N -0.91 -49.86 9.35 21.45 0.20 -49.66 16
19 Si 0.95 41.86 29.54 68.60 2.03 43.89 16
20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16
21 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16
22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
23 C -0.12 -1.94 5.56 31.67 0.18 -1.77 16
24 C -0.12 -1.65 6.91 31.89 0.22 -1.42 16
25 C -0.12 -1.48 6.83 31.67 0.22 -1.27 16
26 C -0.12 -1.86 6.05 31.32 0.19 -1.67 16
27 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16
28 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16
29 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16
30 H 0.11 2.09 7.67 -2.39 -0.02 2.08 16
31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
32 H 0.42 10.12 5.89 -96.74 -0.57 9.55 16
33 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16
34 H 0.13 4.47 8.14 -2.39 -0.02 4.45 16
35 H 0.03 1.57 5.47 -2.39 -0.01 1.56 16
36 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16
37 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16
38 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16
39 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16
40 H 0.03 1.61 5.46 -2.39 -0.01 1.60 16
41 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16
42 H 0.09 1.55 7.84 -2.39 -0.02 1.53 16
43 H 0.08 1.26 7.64 -2.39 -0.02 1.24 16
44 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16
45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
48 H 0.08 1.51 6.40 -2.39 -0.02 1.49 16
49 H 0.09 1.23 7.67 -2.39 -0.02 1.21 16
Total: -1.00 -68.66 385.34 2.27 -66.39
By element:
Atomic # 1 Polarization: 30.43 SS G_CDS: 0.38 Total: 30.81 kcal
Atomic # 6 Polarization: -54.48 SS G_CDS: 4.92 Total: -49.56 kcal
Atomic # 7 Polarization: -78.20 SS G_CDS: -0.81 Total: -79.01 kcal
Atomic # 8 Polarization: -99.58 SS G_CDS: -4.00 Total: -103.58 kcal
Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal
Atomic # 16 Polarization: 91.31 SS G_CDS: -0.25 Total: 91.05 kcal
Total: -68.66 2.27 -66.39 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885394865.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -125.399 kcal
(2) G-P(sol) polarization free energy of solvation -68.658 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) -191.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds