Wall clock time and date at job start Wed Apr 1 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.52998 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.51493 * 54.89393 * 4 3 2 6 6 C 1.53296 * 109.51555 * 174.99563 * 4 3 2 7 7 N 1.47150 * 108.38872 * 172.22128 * 6 4 3 8 8 C 1.34778 * 120.97746 * 129.44006 * 7 6 4 9 9 O 1.21355 * 120.00392 * 6.39299 * 8 7 6 10 10 C 1.49364 * 119.99680 * 186.38525 * 8 7 6 11 11 O 1.21355 * 120.00130 * 6.31084 * 10 8 7 12 12 N 1.34774 * 120.00182 * 186.31091 * 10 8 7 13 13 C 1.39114 * 120.00252 * 185.08628 * 12 10 8 14 14 C 1.39707 * 119.57978 * 174.76710 * 13 12 10 15 15 C 1.38651 * 119.49648 * 179.97438 * 14 13 12 16 16 C 1.38348 * 118.66937 * 359.72913 * 15 14 13 17 17 C 1.40595 * 119.13498 * 0.51535 * 16 15 14 18 18 C 1.41341 * 119.78729 * 179.74832 * 17 16 15 19 19 H 1.07999 * 119.99615 * 4.92644 * 18 17 16 20 20 C 1.40028 * 119.99985 * 184.92546 * 18 17 16 21 21 N 1.30739 * 120.00164 * 354.81507 * 20 18 17 22 22 Si 1.86802 * 120.00062 * 174.81680 * 20 18 17 23 23 H 1.48495 * 109.47136 * 275.00310 * 22 20 18 24 24 H 1.48503 * 109.46722 * 35.00035 * 22 20 18 25 25 H 1.48495 * 109.47282 * 154.99809 * 22 20 18 26 26 N 1.31937 * 119.57819 * 354.75154 * 13 12 10 27 27 C 1.47144 * 118.03768 * 309.71988 * 7 6 4 28 28 C 1.52888 * 108.60599 * 50.22283 * 27 7 6 29 29 O 1.42953 * 109.29913 * 307.93665 * 28 27 7 30 30 H 1.08996 * 109.47199 * 300.00298 * 1 2 3 31 31 H 1.09003 * 109.46722 * 60.00674 * 1 2 3 32 32 H 1.08997 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47443 * 239.99211 * 2 1 3 34 34 H 1.09002 * 109.47245 * 119.99312 * 2 1 3 35 35 H 1.08996 * 109.47302 * 59.99765 * 3 2 1 36 36 H 1.09003 * 109.46747 * 299.99311 * 3 2 1 37 37 H 1.09004 * 109.68132 * 52.49830 * 6 4 3 38 38 H 1.08997 * 109.71139 * 291.97206 * 6 4 3 39 39 H 0.97003 * 120.00256 * 5.08108 * 12 10 8 40 40 H 1.08004 * 120.25298 * 359.97438 * 14 13 12 41 41 H 1.07997 * 120.66831 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.43777 * 180.28422 * 16 15 14 43 43 H 0.96997 * 120.00542 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.68494 * 170.00396 * 27 7 6 45 45 H 1.09004 * 109.68288 * 290.55965 * 27 7 6 46 46 H 1.08998 * 109.58015 * 187.92164 * 28 27 7 47 47 H 1.08993 * 109.36537 * 67.82102 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8518 -0.8413 6 6 4.0820 2.8819 -0.1267 7 7 5.5412 2.8738 0.0631 8 6 6.3590 3.4805 -0.8199 9 8 5.8923 4.1420 -1.7239 10 6 7.8398 3.3389 -0.6855 11 8 8.3045 2.5873 0.1462 12 7 8.6600 4.0458 -1.4881 13 6 10.0343 3.8362 -1.4364 14 6 10.8666 4.4922 -2.3467 15 6 12.2362 4.2825 -2.2932 16 6 12.7396 3.4279 -1.3288 17 6 11.8496 2.7934 -0.4445 18 6 12.3486 1.9135 0.5426 19 1 13.4143 1.7912 0.6681 20 6 11.4612 1.2002 1.3578 21 7 10.1755 1.4228 1.2759 22 14 12.1144 -0.0694 2.5624 23 1 12.2932 -1.3678 1.8646 24 1 13.4206 0.3865 3.1022 25 1 11.1487 -0.2359 3.6782 26 7 10.5350 3.0208 -0.5280 27 6 6.0815 2.1784 1.2420 28 6 5.4717 0.7778 1.3041 29 8 4.0480 0.8783 1.2228 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.6160 3.5055 0.6364 38 1 3.8426 3.2720 -1.1159 39 1 8.2920 4.7006 -2.1019 40 1 10.4465 5.1576 -3.0864 41 1 12.8970 4.7795 -2.9879 42 1 13.8021 3.2475 -1.2585 43 1 9.5608 0.9290 1.8409 44 1 7.1656 2.1022 1.1584 45 1 5.8203 2.7299 2.1452 46 1 5.7499 0.2996 2.2433 47 1 5.8431 0.1845 0.4687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890044878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:20 Heat of formation + Delta-G solvation = -41.265780 kcal Electronic energy + Delta-G solvation = -31227.726543 eV Core-core repulsion = 26991.257250 eV Total energy + Delta-G solvation = -4236.469293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74672 -39.30977 -38.29892 -37.36610 -35.51830 -34.84689 -34.06865 -33.12075 -31.55015 -30.45215 -29.33368 -28.44628 -26.99609 -25.75601 -24.13301 -23.45543 -22.09862 -21.50496 -21.15083 -20.49578 -19.37033 -18.01579 -17.06452 -16.90470 -16.54387 -16.23067 -15.67038 -15.28021 -15.00209 -14.89286 -14.75155 -14.74079 -14.54568 -14.15086 -13.79805 -13.68187 -13.30945 -13.05620 -12.96848 -12.90079 -12.37584 -12.21099 -12.07754 -12.06148 -11.61805 -11.27450 -11.24930 -11.16879 -11.06216 -10.90430 -10.80187 -10.74958 -10.59498 -10.53362 -10.16628 -10.03774 -9.88705 -9.16264 -8.67515 -8.58047 -8.10221 -7.37311 -7.14909 -6.30630 -4.51152 1.77025 2.55788 2.75457 3.01624 3.09981 3.12433 3.19066 3.61960 3.78236 3.83933 3.96976 4.41909 4.71272 4.75410 4.79705 4.80591 4.96068 4.97758 5.15159 5.24067 5.31421 5.37066 5.48565 5.53827 5.58802 5.66130 5.74533 5.86749 5.88862 5.90785 6.00754 6.04443 6.10947 6.14656 6.33402 6.40165 6.51555 6.72343 6.73554 7.08744 7.13765 7.21877 7.36900 7.46786 7.69870 7.75373 7.96816 8.07348 8.30204 8.55064 8.84069 8.93793 10.05890 10.33764 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.003225 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.419886 B = 8680.593650 C =10614.413134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.079 3.921 5 H 0.062 0.938 6 C 0.080 3.920 7 N -0.587 5.587 8 C 0.510 3.490 9 O -0.534 6.534 10 C 0.474 3.526 11 O -0.379 6.379 12 N -0.633 5.633 13 C 0.365 3.635 14 C -0.347 4.347 15 C -0.036 4.036 16 C -0.298 4.298 17 C 0.271 3.729 18 C -0.423 4.423 19 H 0.084 0.916 20 C 0.062 3.938 21 N -0.666 5.666 22 Si 0.899 3.101 23 H -0.270 1.270 24 H -0.264 1.264 25 H -0.277 1.277 26 N -0.473 5.473 27 C 0.012 3.988 28 C 0.053 3.947 29 O -0.380 6.380 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.413 0.587 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.271 0.729 44 H 0.178 0.822 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 -1.317 -0.045 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.147 4.147 4 C 0.021 3.979 5 H 0.080 0.920 6 C -0.043 4.043 7 N -0.321 5.321 8 C 0.294 3.706 9 O -0.411 6.411 10 C 0.252 3.748 11 O -0.244 6.244 12 N -0.281 5.281 13 C 0.128 3.872 14 C -0.372 4.372 15 C -0.060 4.060 16 C -0.321 4.321 17 C 0.146 3.854 18 C -0.453 4.453 19 H 0.102 0.898 20 C -0.167 4.167 21 N -0.285 5.285 22 Si 0.723 3.277 23 H -0.195 1.195 24 H -0.188 1.188 25 H -0.202 1.202 26 N -0.193 5.193 27 C -0.109 4.109 28 C -0.024 4.024 29 O -0.299 6.299 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.249 0.751 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.194 0.806 45 H 0.086 0.914 46 H 0.125 0.875 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.431 -2.102 0.957 15.603 hybrid contribution 0.669 0.354 -0.609 0.972 sum -14.762 -1.748 0.348 14.869 Atomic orbital electron populations 1.21775 0.95909 1.01570 1.01680 1.21461 0.95525 0.96312 1.02633 1.21597 0.91993 0.98148 1.02986 1.22474 0.94921 0.92622 0.87931 0.92012 1.22384 0.80215 0.97734 1.03991 1.47940 1.06031 1.53420 1.24711 1.20683 0.88685 0.79465 0.81806 1.90689 1.77620 1.39267 1.33489 1.20135 0.86372 0.84000 0.84269 1.90706 1.73536 1.31691 1.28445 1.43007 1.04946 1.40053 1.40057 1.18540 0.82020 0.93924 0.92765 1.20519 0.94132 1.14540 1.08048 1.20591 0.93720 0.95591 0.96093 1.21669 0.99128 1.08111 1.03227 1.18358 0.86066 0.90088 0.90854 1.19577 0.94277 1.18831 1.12623 0.89823 1.26133 0.94996 0.97793 0.97746 1.70299 1.01637 1.29171 1.27423 0.86486 0.79836 0.81270 0.80102 1.19543 1.18813 1.20232 1.68614 1.13856 1.17069 1.19718 1.24011 1.07935 0.92376 0.86539 1.22891 0.80062 0.96340 1.03074 1.87920 1.21772 1.82769 1.37400 0.92735 0.92871 0.92811 0.92203 0.91085 0.90817 0.90403 0.90550 0.88334 0.75142 0.88676 0.88305 0.88310 0.91769 0.80627 0.91356 0.87543 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.05 5.83 -26.73 -0.16 -1.20 16 3 C -0.11 -0.97 4.92 -26.73 -0.13 -1.10 16 4 C 0.08 0.91 2.78 -26.58 -0.07 0.83 16 5 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 6 C 0.08 1.00 5.91 -3.53 -0.02 0.97 16 7 N -0.59 -8.94 3.03 -173.07 -0.52 -9.47 16 8 C 0.51 8.97 7.76 -11.62 -0.09 8.88 16 9 O -0.53 -9.82 16.01 5.49 0.09 -9.73 16 10 C 0.47 9.50 7.74 -11.63 -0.09 9.41 16 11 O -0.38 -8.38 8.88 5.49 0.05 -8.33 16 12 N -0.63 -12.76 5.36 -11.83 -0.06 -12.82 16 13 C 0.37 8.62 7.42 -155.09 -1.15 7.47 16 14 C -0.35 -7.58 9.95 -38.88 -0.39 -7.96 16 15 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 16 C -0.30 -7.16 9.83 -38.65 -0.38 -7.54 16 17 C 0.27 7.23 6.55 -84.99 -0.56 6.67 16 18 C -0.42 -10.94 9.13 -37.73 -0.34 -11.29 16 19 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 20 C 0.06 1.51 5.49 -17.35 -0.10 1.41 16 21 N -0.67 -16.63 9.01 55.55 0.50 -16.13 16 22 Si 0.90 18.00 29.56 -169.99 -5.03 12.97 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 25 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 26 N -0.47 -12.51 5.75 -10.27 -0.06 -12.57 16 27 C 0.01 0.18 6.47 -3.75 -0.02 0.15 16 28 C 0.05 0.70 6.97 37.10 0.26 0.96 16 29 O -0.38 -4.88 9.93 -35.23 -0.35 -5.23 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.24 7.13 -51.93 -0.37 0.87 16 39 H 0.41 7.15 8.20 -40.82 -0.33 6.82 16 40 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.27 6.17 8.29 -40.82 -0.34 5.83 16 44 H 0.18 3.12 3.82 -56.59 -0.22 2.91 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -29.34 382.54 -9.69 -39.03 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.79 Total: 10.75 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.27 Total: 5.75 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.15 Total: -50.98 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.21 Total: -23.29 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.34 -9.69 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890044878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.235 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds