Wall clock time and date at job start Wed Apr 1 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.52998 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.51493 * 54.89393 * 4 3 2 6 6 C 1.53296 * 109.51555 * 174.99563 * 4 3 2 7 7 N 1.47150 * 108.38872 * 172.22128 * 6 4 3 8 8 C 1.34778 * 120.97746 * 129.44006 * 7 6 4 9 9 O 1.21355 * 120.00392 * 6.39299 * 8 7 6 10 10 C 1.49364 * 119.99680 * 186.38525 * 8 7 6 11 11 O 1.21355 * 120.00130 * 6.31084 * 10 8 7 12 12 N 1.34774 * 120.00182 * 186.31091 * 10 8 7 13 13 C 1.39114 * 120.00252 * 185.08628 * 12 10 8 14 14 C 1.39707 * 119.57978 * 174.76710 * 13 12 10 15 15 C 1.38651 * 119.49648 * 179.97438 * 14 13 12 16 16 C 1.38348 * 118.66937 * 359.72913 * 15 14 13 17 17 C 1.40595 * 119.13498 * 0.51535 * 16 15 14 18 18 C 1.41341 * 119.78729 * 179.74832 * 17 16 15 19 19 H 1.07999 * 119.99615 * 4.92644 * 18 17 16 20 20 C 1.40028 * 119.99985 * 184.92546 * 18 17 16 21 21 N 1.30739 * 120.00164 * 354.81507 * 20 18 17 22 22 Si 1.86802 * 120.00062 * 174.81680 * 20 18 17 23 23 H 1.48495 * 109.47136 * 275.00310 * 22 20 18 24 24 H 1.48503 * 109.46722 * 35.00035 * 22 20 18 25 25 H 1.48495 * 109.47282 * 154.99809 * 22 20 18 26 26 N 1.31937 * 119.57819 * 354.75154 * 13 12 10 27 27 C 1.47144 * 118.03768 * 309.71988 * 7 6 4 28 28 C 1.52888 * 108.60599 * 50.22283 * 27 7 6 29 29 O 1.42953 * 109.29913 * 307.93665 * 28 27 7 30 30 H 1.08996 * 109.47199 * 300.00298 * 1 2 3 31 31 H 1.09003 * 109.46722 * 60.00674 * 1 2 3 32 32 H 1.08997 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47443 * 239.99211 * 2 1 3 34 34 H 1.09002 * 109.47245 * 119.99312 * 2 1 3 35 35 H 1.08996 * 109.47302 * 59.99765 * 3 2 1 36 36 H 1.09003 * 109.46747 * 299.99311 * 3 2 1 37 37 H 1.09004 * 109.68132 * 52.49830 * 6 4 3 38 38 H 1.08997 * 109.71139 * 291.97206 * 6 4 3 39 39 H 0.97003 * 120.00256 * 5.08108 * 12 10 8 40 40 H 1.08004 * 120.25298 * 359.97438 * 14 13 12 41 41 H 1.07997 * 120.66831 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.43777 * 180.28422 * 16 15 14 43 43 H 0.96997 * 120.00542 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.68494 * 170.00396 * 27 7 6 45 45 H 1.09004 * 109.68288 * 290.55965 * 27 7 6 46 46 H 1.08998 * 109.58015 * 187.92164 * 28 27 7 47 47 H 1.08993 * 109.36537 * 67.82102 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8518 -0.8413 6 6 4.0820 2.8819 -0.1267 7 7 5.5412 2.8738 0.0631 8 6 6.3590 3.4805 -0.8199 9 8 5.8923 4.1420 -1.7239 10 6 7.8398 3.3389 -0.6855 11 8 8.3045 2.5873 0.1462 12 7 8.6600 4.0458 -1.4881 13 6 10.0343 3.8362 -1.4364 14 6 10.8666 4.4922 -2.3467 15 6 12.2362 4.2825 -2.2932 16 6 12.7396 3.4279 -1.3288 17 6 11.8496 2.7934 -0.4445 18 6 12.3486 1.9135 0.5426 19 1 13.4143 1.7912 0.6681 20 6 11.4612 1.2002 1.3578 21 7 10.1755 1.4228 1.2759 22 14 12.1144 -0.0694 2.5624 23 1 12.2932 -1.3678 1.8646 24 1 13.4206 0.3865 3.1022 25 1 11.1487 -0.2359 3.6782 26 7 10.5350 3.0208 -0.5280 27 6 6.0815 2.1784 1.2420 28 6 5.4717 0.7778 1.3041 29 8 4.0480 0.8783 1.2228 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.6160 3.5055 0.6364 38 1 3.8426 3.2720 -1.1159 39 1 8.2920 4.7006 -2.1019 40 1 10.4465 5.1576 -3.0864 41 1 12.8970 4.7795 -2.9879 42 1 13.8021 3.2475 -1.2585 43 1 9.5608 0.9290 1.8409 44 1 7.1656 2.1022 1.1584 45 1 5.8203 2.7299 2.1452 46 1 5.7499 0.2996 2.2433 47 1 5.8431 0.1845 0.4687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890044878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:19 Heat of formation + Delta-G solvation = -58.182109 kcal Electronic energy + Delta-G solvation = -31228.460090 eV Core-core repulsion = 26991.257250 eV Total energy + Delta-G solvation = -4237.202840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13251 -40.71877 -39.71751 -38.96498 -36.71999 -35.92635 -35.53898 -34.83205 -32.47812 -32.25883 -31.10959 -29.57926 -28.06112 -27.48256 -25.55831 -24.49618 -23.60932 -23.04053 -22.03262 -21.83820 -20.85091 -19.64856 -18.56421 -18.30573 -17.83595 -17.56904 -17.03812 -16.49434 -16.32042 -16.29246 -16.28089 -16.01655 -15.59974 -15.48980 -15.46361 -15.08709 -14.66758 -14.37956 -14.08353 -13.87575 -13.82410 -13.76046 -13.39937 -12.98849 -12.89548 -12.73957 -12.55408 -12.47591 -12.32399 -12.21595 -12.06278 -11.93549 -11.76108 -11.67730 -11.60922 -11.49112 -11.24664 -10.91725 -10.20811 -9.93067 -9.76664 -9.13533 -8.93967 -8.09389 -6.40807 0.25967 1.01320 1.20235 1.26420 1.45749 1.55847 1.57147 2.25709 2.29408 2.34406 2.71721 2.98124 3.24625 3.52913 3.89166 3.90350 4.00297 4.01052 4.12424 4.21172 4.30817 4.32185 4.39371 4.47695 4.61711 4.63326 4.73278 4.78140 4.81102 4.86451 4.88077 4.94579 4.95255 5.03421 5.07126 5.12457 5.27931 5.35382 5.37574 5.48941 5.63090 5.75505 5.86596 5.91374 6.07977 6.11363 6.26330 6.44291 6.65850 6.78623 7.04619 7.24310 8.23286 8.56237 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.003225 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.419886 B = 8680.593650 C =10614.413134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.103 4.103 4 C 0.080 3.920 5 H 0.054 0.946 6 C 0.078 3.922 7 N -0.581 5.581 8 C 0.516 3.484 9 O -0.544 6.544 10 C 0.466 3.534 11 O -0.401 6.401 12 N -0.628 5.628 13 C 0.346 3.654 14 C -0.343 4.343 15 C -0.033 4.033 16 C -0.321 4.321 17 C 0.237 3.763 18 C -0.459 4.459 19 H 0.085 0.915 20 C 0.019 3.981 21 N -0.691 5.691 22 Si 0.973 3.027 23 H -0.269 1.269 24 H -0.262 1.262 25 H -0.268 1.268 26 N -0.502 5.502 27 C 0.015 3.985 28 C 0.060 3.940 29 O -0.382 6.382 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.424 0.576 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.276 0.724 44 H 0.153 0.847 45 H 0.079 0.921 46 H 0.124 0.876 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 -1.236 -0.115 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.141 4.141 4 C 0.021 3.979 5 H 0.072 0.928 6 C -0.043 4.043 7 N -0.314 5.314 8 C 0.299 3.701 9 O -0.422 6.422 10 C 0.245 3.755 11 O -0.267 6.267 12 N -0.277 5.277 13 C 0.108 3.892 14 C -0.368 4.368 15 C -0.057 4.057 16 C -0.344 4.344 17 C 0.112 3.888 18 C -0.489 4.489 19 H 0.103 0.897 20 C -0.207 4.207 21 N -0.310 5.310 22 Si 0.795 3.205 23 H -0.194 1.194 24 H -0.186 1.186 25 H -0.192 1.192 26 N -0.221 5.221 27 C -0.106 4.106 28 C -0.017 4.017 29 O -0.301 6.301 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.263 0.737 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.169 0.831 45 H 0.097 0.903 46 H 0.142 0.858 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.948 -2.005 0.876 17.088 hybrid contribution 1.073 0.405 -0.664 1.325 sum -15.875 -1.600 0.212 15.957 Atomic orbital electron populations 1.21750 0.94626 1.02039 1.02238 1.21439 0.96625 0.95911 1.01881 1.21613 0.89773 0.98625 1.04104 1.22598 0.96600 0.91533 0.87168 0.92834 1.22625 0.78118 0.98857 1.04717 1.48020 1.07155 1.52231 1.23997 1.20145 0.87581 0.80060 0.82337 1.90680 1.77383 1.40090 1.34068 1.20662 0.87614 0.83500 0.83758 1.90758 1.74539 1.32310 1.29090 1.42995 1.03918 1.40430 1.40398 1.18965 0.83551 0.93809 0.92825 1.20947 0.94207 1.13910 1.07754 1.21028 0.94379 0.94565 0.95730 1.21856 0.99443 1.09125 1.03967 1.18834 0.86918 0.91049 0.91984 1.19877 0.94777 1.20303 1.13979 0.89653 1.26894 0.95178 0.99466 0.99196 1.70413 1.02561 1.29957 1.28109 0.85359 0.79196 0.78235 0.77730 1.19419 1.18601 1.19233 1.68574 1.14057 1.18354 1.21146 1.23863 1.06526 0.93626 0.86615 1.22828 0.80280 0.95020 1.03579 1.87933 1.21250 1.82804 1.38092 0.92410 0.92061 0.92459 0.92443 0.92414 0.90258 0.88671 0.88972 0.88059 0.73730 0.85388 0.84442 0.87435 0.91334 0.83140 0.90296 0.85845 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.88 5.83 30.59 0.18 -1.70 16 3 C -0.10 -1.61 4.92 30.59 0.15 -1.46 16 4 C 0.08 1.70 2.78 30.69 0.09 1.78 16 5 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 6 C 0.08 1.83 5.91 86.35 0.51 2.34 16 7 N -0.58 -17.33 3.03 -819.83 -2.48 -19.81 16 8 C 0.52 18.03 7.76 87.24 0.68 18.71 16 9 O -0.54 -19.57 16.01 -3.26 -0.05 -19.63 16 10 C 0.47 19.00 7.74 87.24 0.68 19.68 16 11 O -0.40 -18.35 8.88 -3.26 -0.03 -18.38 16 12 N -0.63 -25.46 5.36 -309.71 -1.66 -27.12 16 13 C 0.35 16.47 7.42 133.30 0.99 17.46 16 14 C -0.34 -14.55 9.95 22.72 0.23 -14.33 16 15 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 16 C -0.32 -15.57 9.83 22.87 0.22 -15.34 16 17 C 0.24 13.03 6.55 40.20 0.26 13.29 16 18 C -0.46 -24.58 9.13 23.47 0.21 -24.36 16 19 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 20 C 0.02 0.93 5.49 85.29 0.47 1.40 16 21 N -0.69 -35.56 9.01 21.84 0.20 -35.37 16 22 Si 0.97 37.63 29.56 68.60 2.03 39.66 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 26 N -0.50 -27.25 5.75 -186.42 -1.07 -28.33 16 27 C 0.01 0.43 6.47 86.22 0.56 0.98 16 28 C 0.06 1.53 6.97 71.94 0.50 2.04 16 29 O -0.38 -9.28 9.93 -148.98 -1.48 -10.76 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.05 7.83 -2.39 -0.02 1.03 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 2.35 7.13 -2.39 -0.02 2.34 16 39 H 0.42 14.50 8.20 -92.71 -0.76 13.74 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 43 H 0.28 12.92 8.29 -92.71 -0.77 12.15 16 44 H 0.15 5.50 3.82 -76.14 -0.29 5.21 16 45 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -64.47 382.54 2.07 -62.40 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.04 Total: 39.11 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.66 Total: 18.22 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -5.02 Total: -110.62 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.56 Total: -48.77 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -64.47 2.07 -62.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890044878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.214 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds