Wall clock time and date at job start Wed Apr 1 2020 04:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 C 1.53005 * 109.51493 * 305.10212 * 3 2 1 5 5 C 1.53292 * 109.51458 * 185.00174 * 3 2 1 6 6 N 1.47156 * 108.38955 * 187.77504 * 5 3 2 7 7 C 1.34773 * 120.98225 * 230.52008 * 6 5 3 8 8 O 1.21360 * 120.00206 * 358.41365 * 7 6 5 9 9 C 1.49366 * 119.99628 * 178.42592 * 7 6 5 10 10 O 1.21355 * 120.00335 * 6.53166 * 9 7 6 11 11 N 1.34783 * 119.99957 * 186.52958 * 9 7 6 12 12 C 1.39105 * 120.00145 * 185.09085 * 11 9 7 13 13 C 1.39711 * 119.57525 * 174.67792 * 12 11 9 14 14 C 1.38660 * 119.49158 * 179.73371 * 13 12 11 15 15 C 1.38348 * 118.66845 * 0.52802 * 14 13 12 16 16 C 1.40596 * 119.13837 * 359.73894 * 15 14 13 17 17 C 1.41336 * 119.78788 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.40030 * 120.00101 * 180.02562 * 17 16 15 20 20 N 1.30737 * 119.99628 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99841 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47032 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47082 * 120.00070 * 21 19 17 24 24 H 1.48508 * 109.46653 * 239.99805 * 21 19 17 25 25 N 1.31931 * 119.58058 * 354.95173 * 12 11 9 26 26 C 1.47149 * 118.03312 * 50.52972 * 6 5 3 27 27 C 1.53295 * 108.38898 * 309.47440 * 26 6 5 28 28 O 1.42957 * 109.22444 * 52.29463 * 27 26 6 29 29 H 1.08997 * 109.47133 * 60.00158 * 1 2 3 30 30 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47117 * 299.99824 * 1 2 3 32 32 H 1.09000 * 109.47117 * 240.00176 * 2 1 3 33 33 H 1.09002 * 109.47568 * 120.00044 * 2 1 3 34 34 H 1.09000 * 109.46539 * 59.99588 * 4 3 2 35 35 H 1.08994 * 109.47319 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47163 * 300.00378 * 4 3 2 37 37 H 1.09003 * 109.68567 * 307.49979 * 5 3 2 38 38 H 1.08996 * 109.68279 * 68.01334 * 5 3 2 39 39 H 0.97002 * 119.99200 * 5.10189 * 11 9 7 40 40 H 1.08001 * 120.25697 * 0.02562 * 13 12 11 41 41 H 1.07996 * 120.66719 * 180.28863 * 14 13 12 42 42 H 1.07995 * 120.42950 * 179.71011 * 15 14 13 43 43 H 0.97005 * 119.99307 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.67835 * 69.19431 * 26 6 5 45 45 H 1.08996 * 109.68198 * 189.74297 * 26 6 5 46 46 H 1.09001 * 109.51570 * 172.22668 * 27 26 6 47 47 H 1.09001 * 109.50493 * 292.37273 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4285 2.2008 -1.1799 5 6 3.5677 1.4455 -0.1260 6 7 4.0465 2.8239 0.0644 7 6 4.8918 3.3928 -0.8179 8 8 5.2919 2.7574 -1.7713 9 6 5.3362 4.8053 -0.6220 10 8 5.0331 5.4020 0.3903 11 7 6.0740 5.4172 -1.5696 12 6 6.5772 6.6940 -1.3426 13 6 7.4323 7.2753 -2.2823 14 6 7.9284 8.5503 -2.0570 15 6 7.5670 9.2073 -0.8944 16 6 6.7074 8.5665 0.0151 17 6 6.3297 9.2249 1.2074 18 1 6.7008 10.2171 1.4172 19 6 5.4742 8.5906 2.1166 20 7 5.0245 7.3896 1.8624 21 14 4.9756 9.4605 3.6928 22 1 5.6158 10.7994 3.7429 23 1 3.4992 9.6157 3.7267 24 1 5.4159 8.6575 4.8618 25 7 6.2453 7.3384 -0.2403 26 6 3.5753 3.5627 1.2465 27 6 2.0472 3.4565 1.3057 28 8 1.6674 2.0807 1.2238 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.3423 2.1997 -1.0886 35 1 1.7919 3.2284 -1.1790 36 1 1.7152 1.7144 -2.1122 37 1 4.0003 0.7980 0.6368 38 1 3.8552 1.0898 -1.1153 39 1 6.2538 4.9671 -2.4099 40 1 7.7010 6.7375 -3.1795 41 1 8.5870 9.0195 -2.7728 42 1 7.9406 10.1993 -0.6879 43 1 4.4322 6.9501 2.4924 44 1 4.0086 3.1284 2.1475 45 1 3.8678 4.6095 1.1658 46 1 1.6890 3.8778 2.2451 47 1 1.6116 4.0048 0.4704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890198630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:01 Heat of formation + Delta-G solvation = -31.272323 kcal Electronic energy + Delta-G solvation = -31907.966887 eV Core-core repulsion = 27671.930943 eV Total energy + Delta-G solvation = -4236.035944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90999 -39.55171 -38.37184 -37.35025 -35.36036 -34.54347 -34.06554 -33.11106 -30.46409 -30.29807 -29.33019 -28.91214 -27.34364 -25.78571 -24.73680 -23.89028 -22.58691 -21.64544 -20.83280 -19.63238 -19.27570 -18.00546 -17.04285 -16.85068 -16.36660 -16.22277 -15.98286 -15.18266 -14.94885 -14.77706 -14.72311 -14.53515 -14.29355 -14.09058 -13.80094 -13.59075 -13.50652 -13.02651 -12.96787 -12.47502 -12.26594 -12.20143 -12.07385 -12.03610 -11.90856 -11.52623 -11.26407 -11.18112 -11.04183 -10.95239 -10.79508 -10.72862 -10.58492 -10.45771 -10.07057 -10.00465 -9.90245 -9.16991 -8.67226 -8.53758 -8.09810 -7.36853 -7.14176 -6.29665 -4.50929 1.79786 2.56676 2.75507 3.02023 3.11168 3.14255 3.18320 3.60210 3.79115 3.84647 3.97193 4.45114 4.63871 4.68978 4.77257 4.81225 5.01845 5.09892 5.21006 5.31468 5.35770 5.39830 5.47030 5.54233 5.66045 5.71372 5.83937 5.84887 5.87189 5.90500 6.00640 6.07280 6.13377 6.19930 6.34964 6.41041 6.52077 6.72752 6.73997 7.11002 7.14845 7.22987 7.37682 7.47223 7.70390 7.76608 7.97843 8.08452 8.30986 8.55573 8.84833 8.94427 10.06591 10.34173 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003594 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.633225 B = 7788.565421 C = 9612.908488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.105 3.895 4 C -0.178 4.178 5 C 0.086 3.914 6 N -0.583 5.583 7 C 0.509 3.491 8 O -0.535 6.535 9 C 0.473 3.527 10 O -0.379 6.379 11 N -0.634 5.634 12 C 0.366 3.634 13 C -0.347 4.347 14 C -0.036 4.036 15 C -0.298 4.298 16 C 0.271 3.729 17 C -0.422 4.422 18 H 0.084 0.916 19 C 0.061 3.939 20 N -0.665 5.665 21 Si 0.898 3.102 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 N -0.474 5.474 26 C 0.017 3.983 27 C 0.047 3.953 28 O -0.373 6.373 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.412 0.588 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.270 0.730 44 H 0.072 0.928 45 H 0.175 0.825 46 H 0.105 0.895 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 -11.863 -1.836 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C 0.064 3.936 4 C -0.236 4.236 5 C -0.037 4.037 6 N -0.317 5.317 7 C 0.293 3.707 8 O -0.412 6.412 9 C 0.251 3.749 10 O -0.244 6.244 11 N -0.281 5.281 12 C 0.128 3.872 13 C -0.373 4.373 14 C -0.060 4.060 15 C -0.322 4.322 16 C 0.146 3.854 17 C -0.452 4.452 18 H 0.102 0.898 19 C -0.167 4.167 20 N -0.285 5.285 21 Si 0.722 3.278 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.200 1.200 25 N -0.193 5.193 26 C -0.103 4.103 27 C -0.030 4.030 28 O -0.292 6.292 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.248 0.752 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.190 0.810 46 H 0.123 0.877 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.667 -12.450 -0.694 15.185 hybrid contribution 0.631 0.500 -0.533 0.965 sum -8.036 -11.950 -1.227 14.453 Atomic orbital electron populations 1.21767 0.94970 1.01415 1.02563 1.21459 0.97029 0.93172 1.02799 1.21824 0.92389 0.93879 0.85466 1.22430 1.01736 1.01344 0.98042 1.22364 0.94091 0.83296 1.03976 1.47921 1.44942 1.14124 1.24735 1.20677 0.79297 0.88495 0.82249 1.90688 1.55508 1.64685 1.30311 1.20139 0.82230 0.86537 0.85966 1.90749 1.46846 1.62661 1.24143 1.43005 1.50774 1.15553 1.18795 1.18535 0.91484 0.84427 0.92742 1.20518 1.13535 0.99860 1.03355 1.20594 0.96262 0.93406 0.95753 1.21665 1.10005 1.01797 0.98691 1.18365 0.87855 0.87124 0.92047 1.19627 1.23150 1.01668 1.00800 0.89785 1.26137 0.96039 0.95049 0.99464 1.70317 1.17750 1.09121 1.31276 0.86427 0.78950 0.80628 0.81792 1.18582 1.19965 1.19972 1.68614 1.26134 1.08982 1.15554 1.24040 0.94541 1.04999 0.86756 1.23059 0.94382 0.82662 1.02935 1.87957 1.80171 1.24306 1.36787 0.92477 0.92846 0.91866 0.90491 0.90946 0.91239 0.91958 0.91458 0.90630 0.88268 0.75184 0.88695 0.88314 0.88324 0.91827 0.91011 0.80958 0.87653 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.32 37.16 0.35 -0.89 16 2 C -0.11 -0.95 5.24 -26.73 -0.14 -1.09 16 3 C 0.10 1.17 0.80 -90.47 -0.07 1.10 16 4 C -0.18 -1.98 7.60 37.16 0.28 -1.70 16 5 C 0.09 1.08 5.30 -3.53 -0.02 1.06 16 6 N -0.58 -8.80 2.54 -172.82 -0.44 -9.24 16 7 C 0.51 8.90 7.77 -11.63 -0.09 8.81 16 8 O -0.53 -9.78 15.98 5.49 0.09 -9.69 16 9 C 0.47 9.49 7.76 -11.62 -0.09 9.40 16 10 O -0.38 -8.41 8.80 5.49 0.05 -8.36 16 11 N -0.63 -12.79 5.36 -11.83 -0.06 -12.85 16 12 C 0.37 8.65 7.42 -155.10 -1.15 7.50 16 13 C -0.35 -7.60 9.96 -38.88 -0.39 -7.99 16 14 C -0.04 -0.79 10.15 -39.38 -0.40 -1.19 16 15 C -0.30 -7.19 9.83 -38.65 -0.38 -7.57 16 16 C 0.27 7.24 6.55 -85.00 -0.56 6.68 16 17 C -0.42 -10.95 9.14 -37.73 -0.34 -11.30 16 18 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 19 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 20 N -0.67 -16.68 8.99 55.55 0.50 -16.18 16 21 Si 0.90 18.05 29.56 -169.99 -5.02 13.02 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 N -0.47 -12.55 5.73 -10.28 -0.06 -12.61 16 26 C 0.02 0.26 6.39 -3.53 -0.02 0.23 16 27 C 0.05 0.60 6.60 37.31 0.25 0.84 16 28 O -0.37 -4.72 9.77 -35.23 -0.34 -5.07 16 29 H 0.06 0.46 6.35 -51.93 -0.33 0.13 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 35 H 0.06 0.81 6.12 -51.93 -0.32 0.49 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.26 7.09 -51.93 -0.37 0.89 16 39 H 0.41 7.16 8.21 -40.82 -0.33 6.82 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.27 6.17 8.29 -40.82 -0.34 5.83 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.17 3.05 3.96 -56.37 -0.22 2.83 16 46 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 0.76 6.25 -51.93 -0.32 0.43 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -29.42 372.83 -8.96 -38.38 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.41 Total: 11.68 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.87 Total: 5.32 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.06 Total: -50.89 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.21 Total: -23.13 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.42 -8.96 -38.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890198630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.109 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds