Wall clock time and date at job start Wed Apr 1 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 C 1.53005 * 109.51493 * 305.10212 * 3 2 1 5 5 C 1.53292 * 109.51458 * 185.00174 * 3 2 1 6 6 N 1.47156 * 108.38955 * 187.77504 * 5 3 2 7 7 C 1.34773 * 120.98225 * 230.52008 * 6 5 3 8 8 O 1.21360 * 120.00206 * 358.41365 * 7 6 5 9 9 C 1.49366 * 119.99628 * 178.42592 * 7 6 5 10 10 O 1.21355 * 120.00335 * 6.53166 * 9 7 6 11 11 N 1.34783 * 119.99957 * 186.52958 * 9 7 6 12 12 C 1.39105 * 120.00145 * 185.09085 * 11 9 7 13 13 C 1.39711 * 119.57525 * 174.67792 * 12 11 9 14 14 C 1.38660 * 119.49158 * 179.73371 * 13 12 11 15 15 C 1.38348 * 118.66845 * 0.52802 * 14 13 12 16 16 C 1.40596 * 119.13837 * 359.73894 * 15 14 13 17 17 C 1.41336 * 119.78788 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.40030 * 120.00101 * 180.02562 * 17 16 15 20 20 N 1.30737 * 119.99628 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99841 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47032 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47082 * 120.00070 * 21 19 17 24 24 H 1.48508 * 109.46653 * 239.99805 * 21 19 17 25 25 N 1.31931 * 119.58058 * 354.95173 * 12 11 9 26 26 C 1.47149 * 118.03312 * 50.52972 * 6 5 3 27 27 C 1.53295 * 108.38898 * 309.47440 * 26 6 5 28 28 O 1.42957 * 109.22444 * 52.29463 * 27 26 6 29 29 H 1.08997 * 109.47133 * 60.00158 * 1 2 3 30 30 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47117 * 299.99824 * 1 2 3 32 32 H 1.09000 * 109.47117 * 240.00176 * 2 1 3 33 33 H 1.09002 * 109.47568 * 120.00044 * 2 1 3 34 34 H 1.09000 * 109.46539 * 59.99588 * 4 3 2 35 35 H 1.08994 * 109.47319 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47163 * 300.00378 * 4 3 2 37 37 H 1.09003 * 109.68567 * 307.49979 * 5 3 2 38 38 H 1.08996 * 109.68279 * 68.01334 * 5 3 2 39 39 H 0.97002 * 119.99200 * 5.10189 * 11 9 7 40 40 H 1.08001 * 120.25697 * 0.02562 * 13 12 11 41 41 H 1.07996 * 120.66719 * 180.28863 * 14 13 12 42 42 H 1.07995 * 120.42950 * 179.71011 * 15 14 13 43 43 H 0.97005 * 119.99307 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.67835 * 69.19431 * 26 6 5 45 45 H 1.08996 * 109.68198 * 189.74297 * 26 6 5 46 46 H 1.09001 * 109.51570 * 172.22668 * 27 26 6 47 47 H 1.09001 * 109.50493 * 292.37273 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4285 2.2008 -1.1799 5 6 3.5677 1.4455 -0.1260 6 7 4.0465 2.8239 0.0644 7 6 4.8918 3.3928 -0.8179 8 8 5.2919 2.7574 -1.7713 9 6 5.3362 4.8053 -0.6220 10 8 5.0331 5.4020 0.3903 11 7 6.0740 5.4172 -1.5696 12 6 6.5772 6.6940 -1.3426 13 6 7.4323 7.2753 -2.2823 14 6 7.9284 8.5503 -2.0570 15 6 7.5670 9.2073 -0.8944 16 6 6.7074 8.5665 0.0151 17 6 6.3297 9.2249 1.2074 18 1 6.7008 10.2171 1.4172 19 6 5.4742 8.5906 2.1166 20 7 5.0245 7.3896 1.8624 21 14 4.9756 9.4605 3.6928 22 1 5.6158 10.7994 3.7429 23 1 3.4992 9.6157 3.7267 24 1 5.4159 8.6575 4.8618 25 7 6.2453 7.3384 -0.2403 26 6 3.5753 3.5627 1.2465 27 6 2.0472 3.4565 1.3057 28 8 1.6674 2.0807 1.2238 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.3423 2.1997 -1.0886 35 1 1.7919 3.2284 -1.1790 36 1 1.7152 1.7144 -2.1122 37 1 4.0003 0.7980 0.6368 38 1 3.8552 1.0898 -1.1153 39 1 6.2538 4.9671 -2.4099 40 1 7.7010 6.7375 -3.1795 41 1 8.5870 9.0195 -2.7728 42 1 7.9406 10.1993 -0.6879 43 1 4.4322 6.9501 2.4924 44 1 4.0086 3.1284 2.1475 45 1 3.8678 4.6095 1.1658 46 1 1.6890 3.8778 2.2451 47 1 1.6116 4.0048 0.4704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890198630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:00 Heat of formation + Delta-G solvation = -48.428309 kcal Electronic energy + Delta-G solvation = -31908.710826 eV Core-core repulsion = 27671.930943 eV Total energy + Delta-G solvation = -4236.779884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22467 -40.92228 -39.86725 -38.95284 -36.70993 -35.70750 -35.41981 -34.82916 -32.27208 -31.22094 -31.09769 -29.96592 -28.49786 -27.55735 -25.91023 -25.12684 -23.83600 -23.32643 -22.35459 -20.97629 -20.44482 -19.63903 -18.54867 -18.29947 -17.76996 -17.41896 -17.17607 -16.52261 -16.37666 -16.30310 -16.17547 -15.81050 -15.63356 -15.54108 -15.05821 -14.86738 -14.70154 -14.61746 -14.16297 -13.90442 -13.77119 -13.51738 -13.16999 -12.99639 -12.89889 -12.86652 -12.74234 -12.55089 -12.43760 -12.32700 -12.11842 -11.97441 -11.73902 -11.71164 -11.64069 -11.55972 -11.09096 -10.92830 -10.21049 -9.93313 -9.71694 -9.13586 -8.93704 -8.09134 -6.41347 0.28367 1.00785 1.20837 1.27253 1.45376 1.55023 1.57701 2.26512 2.28902 2.35570 2.71341 2.98051 3.25357 3.54229 3.77480 3.82158 3.95508 4.01436 4.14610 4.28574 4.31826 4.38708 4.46248 4.53607 4.57873 4.62376 4.65522 4.70421 4.80205 4.86228 4.88755 4.94413 4.99764 5.03988 5.06514 5.12875 5.16887 5.28594 5.36892 5.49268 5.63003 5.75401 5.87786 5.91703 6.08412 6.16564 6.26310 6.45060 6.66850 6.78839 7.04548 7.24729 8.23449 8.55989 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003594 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.633225 B = 7788.565421 C = 9612.908488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C 0.104 3.896 4 C -0.175 4.175 5 C 0.082 3.918 6 N -0.575 5.575 7 C 0.516 3.484 8 O -0.545 6.545 9 C 0.464 3.536 10 O -0.402 6.402 11 N -0.629 5.629 12 C 0.347 3.653 13 C -0.343 4.343 14 C -0.033 4.033 15 C -0.321 4.321 16 C 0.237 3.763 17 C -0.458 4.458 18 H 0.085 0.915 19 C 0.019 3.981 20 N -0.691 5.691 21 Si 0.973 3.027 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.271 1.271 25 N -0.502 5.502 26 C 0.020 3.980 27 C 0.054 3.946 28 O -0.376 6.376 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.424 0.576 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.107 0.893 43 H 0.275 0.725 44 H 0.076 0.924 45 H 0.149 0.851 46 H 0.121 0.879 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 -13.239 -2.106 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C 0.064 3.936 4 C -0.232 4.232 5 C -0.039 4.039 6 N -0.308 5.308 7 C 0.298 3.702 8 O -0.423 6.423 9 C 0.244 3.756 10 O -0.268 6.268 11 N -0.278 5.278 12 C 0.109 3.891 13 C -0.368 4.368 14 C -0.057 4.057 15 C -0.344 4.344 16 C 0.112 3.888 17 C -0.488 4.488 18 H 0.103 0.897 19 C -0.207 4.207 20 N -0.311 5.311 21 Si 0.794 3.206 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.196 1.196 25 N -0.222 5.222 26 C -0.101 4.101 27 C -0.023 4.023 28 O -0.295 6.295 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.262 0.738 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.165 0.835 46 H 0.139 0.861 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.368 -13.862 -0.986 16.760 hybrid contribution 0.869 0.851 -0.552 1.335 sum -8.499 -13.011 -1.538 15.617 Atomic orbital electron populations 1.21747 0.94397 1.02312 1.02035 1.21502 0.97457 0.91306 1.03867 1.21998 0.91329 0.95338 0.84968 1.22410 1.02344 0.99971 0.98498 1.22627 0.95208 0.81558 1.04526 1.47968 1.43750 1.15109 1.23978 1.20121 0.79977 0.87304 0.82775 1.90678 1.56330 1.64495 1.30836 1.20679 0.81766 0.87622 0.85576 1.90797 1.47345 1.63719 1.24915 1.42994 1.50636 1.14650 1.19534 1.18959 0.91941 0.85484 0.92681 1.20946 1.12087 0.99986 1.03804 1.21034 0.95914 0.93270 0.95513 1.21851 1.10468 1.02547 0.99527 1.18839 0.88922 0.87857 0.93166 1.19918 1.24833 1.02224 1.01871 0.89651 1.26896 0.95679 0.95760 1.02384 1.70432 1.17999 1.10192 1.32453 0.85296 0.78588 0.79292 0.77391 1.18361 1.19304 1.19557 1.68575 1.27190 1.09358 1.17099 1.23878 0.96109 1.03460 0.86635 1.22985 0.92635 0.83090 1.03596 1.87968 1.80005 1.23938 1.37609 0.92252 0.91281 0.93129 0.88734 0.90592 0.90209 0.94274 0.90524 0.89461 0.88034 0.73776 0.85407 0.84433 0.87445 0.91389 0.90568 0.83481 0.86114 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.32 71.98 0.67 -1.40 16 2 C -0.10 -1.56 5.24 30.59 0.16 -1.40 16 3 C 0.10 2.14 0.80 -10.69 -0.01 2.13 16 4 C -0.18 -3.64 7.60 71.98 0.55 -3.10 16 5 C 0.08 1.95 5.30 86.35 0.46 2.41 16 6 N -0.58 -17.14 2.54 -819.03 -2.08 -19.22 16 7 C 0.52 18.03 7.77 87.24 0.68 18.70 16 8 O -0.54 -19.58 15.98 -3.28 -0.05 -19.64 16 9 C 0.46 19.05 7.76 87.24 0.68 19.73 16 10 O -0.40 -18.52 8.80 -3.26 -0.03 -18.55 16 11 N -0.63 -25.61 5.36 -309.71 -1.66 -27.27 16 12 C 0.35 16.57 7.42 133.31 0.99 17.56 16 13 C -0.34 -14.60 9.96 22.73 0.23 -14.38 16 14 C -0.03 -1.41 10.15 22.40 0.23 -1.19 16 15 C -0.32 -15.62 9.83 22.87 0.22 -15.39 16 16 C 0.24 13.08 6.55 40.20 0.26 13.34 16 17 C -0.46 -24.61 9.14 23.47 0.21 -24.39 16 18 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 19 C 0.02 0.94 5.50 85.29 0.47 1.41 16 20 N -0.69 -35.83 8.99 21.84 0.20 -35.63 16 21 Si 0.97 37.82 29.56 68.60 2.03 39.84 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 25 N -0.50 -27.43 5.73 -186.43 -1.07 -28.50 16 26 C 0.02 0.60 6.39 86.35 0.55 1.15 16 27 C 0.05 1.35 6.60 72.08 0.48 1.83 16 28 O -0.38 -8.95 9.77 -148.98 -1.46 -10.41 16 29 H 0.06 0.80 6.35 -2.39 -0.02 0.79 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.84 7.83 -2.39 -0.02 0.82 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.48 6.35 -2.39 -0.02 1.47 16 35 H 0.04 0.99 6.12 -2.39 -0.01 0.98 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.39 7.09 -2.39 -0.02 2.37 16 39 H 0.42 14.57 8.21 -92.71 -0.76 13.81 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.14 4.68 8.06 -2.91 -0.02 4.65 16 42 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.28 12.98 8.29 -92.70 -0.77 12.21 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.15 5.40 3.96 -72.75 -0.29 5.11 16 46 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.05 1.37 6.25 -2.39 -0.01 1.36 16 Total: -1.00 -64.86 372.83 2.68 -62.18 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.02 Total: 40.20 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 6.82 Total: 17.00 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.61 Total: -110.62 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -1.54 Total: -48.59 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.84 kcal Total: -64.86 2.68 -62.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890198630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds