Wall clock time and date at job start Wed Apr 1 2020 04:23:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47061 * 2 1
4 4 C 1.53005 * 109.51493 * 305.10212 * 3 2 1
5 5 C 1.53292 * 109.51458 * 185.00174 * 3 2 1
6 6 N 1.47156 * 108.38955 * 187.77504 * 5 3 2
7 7 C 1.34773 * 120.98225 * 230.52008 * 6 5 3
8 8 O 1.21360 * 120.00206 * 358.41365 * 7 6 5
9 9 C 1.49366 * 119.99628 * 178.42592 * 7 6 5
10 10 O 1.21355 * 120.00335 * 6.53166 * 9 7 6
11 11 N 1.34783 * 119.99957 * 186.52958 * 9 7 6
12 12 C 1.39105 * 120.00145 * 185.09085 * 11 9 7
13 13 C 1.39711 * 119.57525 * 174.67792 * 12 11 9
14 14 C 1.38660 * 119.49158 * 179.73371 * 13 12 11
15 15 C 1.38348 * 118.66845 * 0.52802 * 14 13 12
16 16 C 1.40596 * 119.13837 * 359.73894 * 15 14 13
17 17 C 1.41336 * 119.78788 * 179.97438 * 16 15 14
18 18 H 1.07998 * 119.99677 * 0.02562 * 17 16 15
19 19 C 1.40030 * 120.00101 * 180.02562 * 17 16 15
20 20 N 1.30737 * 119.99628 * 359.97438 * 19 17 16
21 21 Si 1.86802 * 119.99841 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47032 * 359.97438 * 21 19 17
23 23 H 1.48493 * 109.47082 * 120.00070 * 21 19 17
24 24 H 1.48508 * 109.46653 * 239.99805 * 21 19 17
25 25 N 1.31931 * 119.58058 * 354.95173 * 12 11 9
26 26 C 1.47149 * 118.03312 * 50.52972 * 6 5 3
27 27 C 1.53295 * 108.38898 * 309.47440 * 26 6 5
28 28 O 1.42957 * 109.22444 * 52.29463 * 27 26 6
29 29 H 1.08997 * 109.47133 * 60.00158 * 1 2 3
30 30 H 1.08999 * 109.46905 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47117 * 299.99824 * 1 2 3
32 32 H 1.09000 * 109.47117 * 240.00176 * 2 1 3
33 33 H 1.09002 * 109.47568 * 120.00044 * 2 1 3
34 34 H 1.09000 * 109.46539 * 59.99588 * 4 3 2
35 35 H 1.08994 * 109.47319 * 179.97438 * 4 3 2
36 36 H 1.08997 * 109.47163 * 300.00378 * 4 3 2
37 37 H 1.09003 * 109.68567 * 307.49979 * 5 3 2
38 38 H 1.08996 * 109.68279 * 68.01334 * 5 3 2
39 39 H 0.97002 * 119.99200 * 5.10189 * 11 9 7
40 40 H 1.08001 * 120.25697 * 0.02562 * 13 12 11
41 41 H 1.07996 * 120.66719 * 180.28863 * 14 13 12
42 42 H 1.07995 * 120.42950 * 179.71011 * 15 14 13
43 43 H 0.97005 * 119.99307 * 179.97438 * 20 19 17
44 44 H 1.09002 * 109.67835 * 69.19431 * 26 6 5
45 45 H 1.08996 * 109.68198 * 189.74297 * 26 6 5
46 46 H 1.09001 * 109.51570 * 172.22668 * 27 26 6
47 47 H 1.09001 * 109.50493 * 292.37273 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.4285 2.2008 -1.1799
5 6 3.5677 1.4455 -0.1260
6 7 4.0465 2.8239 0.0644
7 6 4.8918 3.3928 -0.8179
8 8 5.2919 2.7574 -1.7713
9 6 5.3362 4.8053 -0.6220
10 8 5.0331 5.4020 0.3903
11 7 6.0740 5.4172 -1.5696
12 6 6.5772 6.6940 -1.3426
13 6 7.4323 7.2753 -2.2823
14 6 7.9284 8.5503 -2.0570
15 6 7.5670 9.2073 -0.8944
16 6 6.7074 8.5665 0.0151
17 6 6.3297 9.2249 1.2074
18 1 6.7008 10.2171 1.4172
19 6 5.4742 8.5906 2.1166
20 7 5.0245 7.3896 1.8624
21 14 4.9756 9.4605 3.6928
22 1 5.6158 10.7994 3.7429
23 1 3.4992 9.6157 3.7267
24 1 5.4159 8.6575 4.8618
25 7 6.2453 7.3384 -0.2403
26 6 3.5753 3.5627 1.2465
27 6 2.0472 3.4565 1.3057
28 8 1.6674 2.0807 1.2238
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 0.3423 2.1997 -1.0886
35 1 1.7919 3.2284 -1.1790
36 1 1.7152 1.7144 -2.1122
37 1 4.0003 0.7980 0.6368
38 1 3.8552 1.0898 -1.1153
39 1 6.2538 4.9671 -2.4099
40 1 7.7010 6.7375 -3.1795
41 1 8.5870 9.0195 -2.7728
42 1 7.9406 10.1993 -0.6879
43 1 4.4322 6.9501 2.4924
44 1 4.0086 3.1284 2.1475
45 1 3.8678 4.6095 1.1658
46 1 1.6890 3.8778 2.2451
47 1 1.6116 4.0048 0.4704
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000890198630.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:23:00
Heat of formation + Delta-G solvation = -48.428309 kcal
Electronic energy + Delta-G solvation = -31908.710826 eV
Core-core repulsion = 27671.930943 eV
Total energy + Delta-G solvation = -4236.779884 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.22467 -40.92228 -39.86725 -38.95284 -36.70993 -35.70750 -35.41981 -34.82916
-32.27208 -31.22094 -31.09769 -29.96592 -28.49786 -27.55735 -25.91023 -25.12684
-23.83600 -23.32643 -22.35459 -20.97629 -20.44482 -19.63903 -18.54867 -18.29947
-17.76996 -17.41896 -17.17607 -16.52261 -16.37666 -16.30310 -16.17547 -15.81050
-15.63356 -15.54108 -15.05821 -14.86738 -14.70154 -14.61746 -14.16297 -13.90442
-13.77119 -13.51738 -13.16999 -12.99639 -12.89889 -12.86652 -12.74234 -12.55089
-12.43760 -12.32700 -12.11842 -11.97441 -11.73902 -11.71164 -11.64069 -11.55972
-11.09096 -10.92830 -10.21049 -9.93313 -9.71694 -9.13586 -8.93704 -8.09134
-6.41347 0.28367 1.00785 1.20837 1.27253 1.45376 1.55023 1.57701
2.26512 2.28902 2.35570 2.71341 2.98051 3.25357 3.54229 3.77480
3.82158 3.95508 4.01436 4.14610 4.28574 4.31826 4.38708 4.46248
4.53607 4.57873 4.62376 4.65522 4.70421 4.80205 4.86228 4.88755
4.94413 4.99764 5.03988 5.06514 5.12875 5.16887 5.28594 5.36892
5.49268 5.63003 5.75401 5.87786 5.91703 6.08412 6.16564 6.26310
6.45060 6.66850 6.78839 7.04548 7.24729 8.23449 8.55989
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.012820 B = 0.003594 C = 0.002912
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2183.633225 B = 7788.565421 C = 9612.908488
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.104 4.104
3 C 0.104 3.896
4 C -0.175 4.175
5 C 0.082 3.918
6 N -0.575 5.575
7 C 0.516 3.484
8 O -0.545 6.545
9 C 0.464 3.536
10 O -0.402 6.402
11 N -0.629 5.629
12 C 0.347 3.653
13 C -0.343 4.343
14 C -0.033 4.033
15 C -0.321 4.321
16 C 0.237 3.763
17 C -0.458 4.458
18 H 0.085 0.915
19 C 0.019 3.981
20 N -0.691 5.691
21 Si 0.973 3.027
22 H -0.260 1.260
23 H -0.268 1.268
24 H -0.271 1.271
25 N -0.502 5.502
26 C 0.020 3.980
27 C 0.054 3.946
28 O -0.376 6.376
29 H 0.059 0.941
30 H 0.068 0.932
31 H 0.050 0.950
32 H 0.094 0.906
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.038 0.962
36 H 0.076 0.924
37 H 0.087 0.913
38 H 0.101 0.899
39 H 0.424 0.576
40 H 0.128 0.872
41 H 0.138 0.862
42 H 0.107 0.893
43 H 0.275 0.725
44 H 0.076 0.924
45 H 0.149 0.851
46 H 0.121 0.879
47 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.538 -13.239 -2.106 15.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.141 4.141
3 C 0.064 3.936
4 C -0.232 4.232
5 C -0.039 4.039
6 N -0.308 5.308
7 C 0.298 3.702
8 O -0.423 6.423
9 C 0.244 3.756
10 O -0.268 6.268
11 N -0.278 5.278
12 C 0.109 3.891
13 C -0.368 4.368
14 C -0.057 4.057
15 C -0.344 4.344
16 C 0.112 3.888
17 C -0.488 4.488
18 H 0.103 0.897
19 C -0.207 4.207
20 N -0.311 5.311
21 Si 0.794 3.206
22 H -0.184 1.184
23 H -0.193 1.193
24 H -0.196 1.196
25 N -0.222 5.222
26 C -0.101 4.101
27 C -0.023 4.023
28 O -0.295 6.295
29 H 0.077 0.923
30 H 0.087 0.913
31 H 0.069 0.931
32 H 0.113 0.887
33 H 0.094 0.906
34 H 0.098 0.902
35 H 0.057 0.943
36 H 0.095 0.905
37 H 0.105 0.895
38 H 0.120 0.880
39 H 0.262 0.738
40 H 0.146 0.854
41 H 0.156 0.844
42 H 0.126 0.874
43 H 0.086 0.914
44 H 0.094 0.906
45 H 0.165 0.835
46 H 0.139 0.861
47 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -9.368 -13.862 -0.986 16.760
hybrid contribution 0.869 0.851 -0.552 1.335
sum -8.499 -13.011 -1.538 15.617
Atomic orbital electron populations
1.21747 0.94397 1.02312 1.02035 1.21502 0.97457 0.91306 1.03867
1.21998 0.91329 0.95338 0.84968 1.22410 1.02344 0.99971 0.98498
1.22627 0.95208 0.81558 1.04526 1.47968 1.43750 1.15109 1.23978
1.20121 0.79977 0.87304 0.82775 1.90678 1.56330 1.64495 1.30836
1.20679 0.81766 0.87622 0.85576 1.90797 1.47345 1.63719 1.24915
1.42994 1.50636 1.14650 1.19534 1.18959 0.91941 0.85484 0.92681
1.20946 1.12087 0.99986 1.03804 1.21034 0.95914 0.93270 0.95513
1.21851 1.10468 1.02547 0.99527 1.18839 0.88922 0.87857 0.93166
1.19918 1.24833 1.02224 1.01871 0.89651 1.26896 0.95679 0.95760
1.02384 1.70432 1.17999 1.10192 1.32453 0.85296 0.78588 0.79292
0.77391 1.18361 1.19304 1.19557 1.68575 1.27190 1.09358 1.17099
1.23878 0.96109 1.03460 0.86635 1.22985 0.92635 0.83090 1.03596
1.87968 1.80005 1.23938 1.37609 0.92252 0.91281 0.93129 0.88734
0.90592 0.90209 0.94274 0.90524 0.89461 0.88034 0.73776 0.85407
0.84433 0.87445 0.91389 0.90568 0.83481 0.86114 0.92944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.07 9.32 71.98 0.67 -1.40 16
2 C -0.10 -1.56 5.24 30.59 0.16 -1.40 16
3 C 0.10 2.14 0.80 -10.69 -0.01 2.13 16
4 C -0.18 -3.64 7.60 71.98 0.55 -3.10 16
5 C 0.08 1.95 5.30 86.35 0.46 2.41 16
6 N -0.58 -17.14 2.54 -819.03 -2.08 -19.22 16
7 C 0.52 18.03 7.77 87.24 0.68 18.70 16
8 O -0.54 -19.58 15.98 -3.28 -0.05 -19.64 16
9 C 0.46 19.05 7.76 87.24 0.68 19.73 16
10 O -0.40 -18.52 8.80 -3.26 -0.03 -18.55 16
11 N -0.63 -25.61 5.36 -309.71 -1.66 -27.27 16
12 C 0.35 16.57 7.42 133.31 0.99 17.56 16
13 C -0.34 -14.60 9.96 22.73 0.23 -14.38 16
14 C -0.03 -1.41 10.15 22.40 0.23 -1.19 16
15 C -0.32 -15.62 9.83 22.87 0.22 -15.39 16
16 C 0.24 13.08 6.55 40.20 0.26 13.34 16
17 C -0.46 -24.61 9.14 23.47 0.21 -24.39 16
18 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16
19 C 0.02 0.94 5.50 85.29 0.47 1.41 16
20 N -0.69 -35.83 8.99 21.84 0.20 -35.63 16
21 Si 0.97 37.82 29.56 68.60 2.03 39.84 16
22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16
23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16
24 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16
25 N -0.50 -27.43 5.73 -186.43 -1.07 -28.50 16
26 C 0.02 0.60 6.39 86.35 0.55 1.15 16
27 C 0.05 1.35 6.60 72.08 0.48 1.83 16
28 O -0.38 -8.95 9.77 -148.98 -1.46 -10.41 16
29 H 0.06 0.80 6.35 -2.39 -0.02 0.79 16
30 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16
31 H 0.05 0.84 7.83 -2.39 -0.02 0.82 16
32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
34 H 0.08 1.48 6.35 -2.39 -0.02 1.47 16
35 H 0.04 0.99 6.12 -2.39 -0.01 0.98 16
36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
38 H 0.10 2.39 7.09 -2.39 -0.02 2.37 16
39 H 0.42 14.57 8.21 -92.71 -0.76 13.81 16
40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16
41 H 0.14 4.68 8.06 -2.91 -0.02 4.65 16
42 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16
43 H 0.28 12.98 8.29 -92.70 -0.77 12.21 16
44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
45 H 0.15 5.40 3.96 -72.75 -0.29 5.11 16
46 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16
47 H 0.05 1.37 6.25 -2.39 -0.01 1.36 16
Total: -1.00 -64.86 372.83 2.68 -62.18
By element:
Atomic # 1 Polarization: 40.22 SS G_CDS: -0.02 Total: 40.20 kcal
Atomic # 6 Polarization: 10.17 SS G_CDS: 6.82 Total: 17.00 kcal
Atomic # 7 Polarization: -106.01 SS G_CDS: -4.61 Total: -110.62 kcal
Atomic # 8 Polarization: -47.06 SS G_CDS: -1.54 Total: -48.59 kcal
Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.84 kcal
Total: -64.86 2.68 -62.18 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000890198630.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal
(2) G-P(sol) polarization free energy of solvation -64.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.428 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds