Wall clock time and date at job start Wed Apr 1 2020 04:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47219 * 2 1 4 4 C 1.38355 * 120.27515 * 270.02093 * 3 2 1 5 5 N 1.31877 * 121.19164 * 179.97438 * 4 3 2 6 6 C 1.32238 * 121.79471 * 359.65688 * 5 4 3 7 7 O 1.35426 * 119.80241 * 180.31224 * 6 5 4 8 8 C 1.40276 * 120.40260 * 0.62906 * 6 5 4 9 9 C 1.47526 * 120.60187 * 179.68014 * 8 6 5 10 10 O 1.21599 * 119.99561 * 359.72743 * 9 8 6 11 11 N 1.34775 * 120.00283 * 179.72254 * 9 8 6 12 12 C 1.46500 * 119.99973 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.93226 * 31.35593 * 12 11 9 14 14 C 1.55056 * 110.87236 * 267.71421 * 12 11 9 15 15 O 1.44608 * 103.66846 * 205.32310 * 14 12 11 16 16 C 1.42834 * 106.73394 * 39.08740 * 15 14 12 17 17 C 1.52650 * 115.96348 * 202.47035 * 16 15 14 18 18 N 1.47224 * 87.78301 * 218.41065 * 17 16 15 19 19 C 1.36935 * 135.96655 * 206.38126 * 18 17 16 20 20 H 1.07995 * 120.00083 * 6.48200 * 19 18 17 21 21 C 1.38817 * 119.99741 * 186.48533 * 19 18 17 22 22 N 1.31620 * 119.99762 * 6.40711 * 21 19 18 23 23 Si 1.86796 * 119.99659 * 186.41024 * 21 19 18 24 24 H 1.48494 * 109.47314 * 84.99017 * 23 21 19 25 25 H 1.48503 * 109.47018 * 204.98577 * 23 21 19 26 26 H 1.48499 * 109.47419 * 324.98234 * 23 21 19 27 27 C 1.47225 * 88.06172 * 26.63735 * 18 17 16 28 28 C 1.53318 * 108.32839 * 334.30342 * 16 15 14 29 29 C 1.38338 * 120.27157 * 89.99919 * 3 2 1 30 30 H 1.09000 * 109.46868 * 59.99773 * 1 2 3 31 31 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47362 * 299.99924 * 1 2 3 33 33 H 1.08996 * 109.47362 * 240.00076 * 2 1 3 34 34 H 1.09000 * 109.46868 * 120.00227 * 2 1 3 35 35 H 1.07999 * 119.40202 * 359.97438 * 4 3 2 36 36 H 0.96702 * 114.00283 * 270.32117 * 7 6 5 37 37 H 0.96992 * 120.00036 * 0.02562 * 11 9 8 38 38 H 1.09007 * 110.58732 * 323.86828 * 14 12 11 39 39 H 1.09003 * 110.58606 * 86.62425 * 14 12 11 40 40 H 1.09000 * 113.49520 * 103.68213 * 17 16 15 41 41 H 1.08995 * 113.56307 * 333.15030 * 17 16 15 42 42 H 0.97006 * 119.99259 * 180.02562 * 22 21 19 43 43 H 1.08999 * 113.49998 * 88.09597 * 27 18 17 44 44 H 1.08998 * 113.49567 * 218.64000 * 27 18 17 45 45 H 1.09001 * 110.56290 * 120.19416 * 28 16 15 46 46 H 1.09001 * 110.56534 * 243.04368 * 28 16 15 47 47 H 1.08004 * 120.82009 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0785 -1.1949 5 7 2.7035 3.3219 -1.2159 6 6 2.9353 3.9979 -0.1033 7 8 3.3798 5.2753 -0.1721 8 6 2.7297 3.3978 1.1478 9 6 2.9936 4.1456 2.3919 10 8 3.3977 5.2912 2.3384 11 7 2.7866 3.5591 3.5875 12 6 3.0492 4.3015 4.8229 13 1 2.8636 5.3666 4.6840 14 6 4.4970 4.0533 5.3194 15 8 4.4163 4.2955 6.7428 16 6 3.1712 3.7510 7.1827 17 6 2.6133 4.3239 8.4830 18 7 2.1693 2.9626 8.8254 19 6 1.1803 2.4149 9.5980 20 1 0.4342 3.0509 10.0509 21 6 1.1369 1.0420 9.7992 22 7 2.1139 0.2805 9.3543 23 14 -0.3083 0.2756 10.7010 24 1 -1.4146 0.0269 9.7422 25 1 0.1151 -1.0098 11.3123 26 1 -0.7742 1.2001 11.7656 27 6 3.2583 2.4483 7.9787 28 6 2.2024 3.7415 5.9944 29 6 2.2648 2.0783 1.1948 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0827 1.5644 -2.1271 36 1 4.3432 5.3558 -0.1944 37 1 2.4646 2.6452 3.6301 38 1 4.7988 3.0246 5.1223 39 1 5.1888 4.7515 4.8482 40 1 1.7917 5.0241 8.3321 41 1 3.3806 4.7122 9.1526 42 1 2.0833 -0.6788 9.4946 43 1 4.2019 2.3262 8.5106 44 1 2.9808 1.5658 7.4023 45 1 1.8730 2.7255 5.7771 46 1 1.3475 4.3882 6.1922 47 1 2.0911 1.5859 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053969405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:20 Heat of formation + Delta-G solvation = -20.645028 kcal Electronic energy + Delta-G solvation = -30455.639084 eV Core-core repulsion = 26220.063973 eV Total energy + Delta-G solvation = -4235.575110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26704 -40.17644 -38.99389 -37.63642 -36.38954 -34.68886 -34.59330 -32.84457 -32.17692 -30.16425 -29.44418 -28.13725 -25.86741 -25.18961 -24.81418 -24.42275 -22.84581 -22.14801 -21.26731 -20.68288 -19.15805 -18.89112 -17.80431 -17.57056 -16.80397 -16.36854 -16.22541 -15.48559 -15.21266 -15.16638 -14.98422 -14.84652 -14.51784 -14.35674 -13.89280 -13.76162 -13.68023 -13.44109 -13.29440 -12.92713 -12.65362 -12.47040 -12.35257 -12.14379 -11.79916 -11.67395 -11.50573 -11.45113 -11.07106 -10.97558 -10.85090 -10.71222 -10.52967 -10.33820 -10.29159 -10.13571 -9.70737 -9.58488 -9.25862 -9.10077 -8.85941 -8.76964 -6.98678 -5.87071 -3.18633 0.19994 0.66483 2.56997 2.82160 3.17888 3.33355 3.38499 3.40356 3.45075 4.07638 4.17212 4.21796 4.31067 4.38791 4.45986 4.60941 4.77193 4.85124 4.90721 4.94136 5.03125 5.09748 5.23172 5.28826 5.30307 5.30723 5.33636 5.42170 5.49889 5.52805 5.77985 5.79779 5.84037 5.86689 6.00364 6.03475 6.20754 6.32994 6.41722 6.55380 6.57930 6.90245 7.07530 7.17926 7.28758 7.39005 7.46917 7.54445 7.86711 7.99030 8.94379 9.60560 10.54000 11.31586 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.002747 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.795722 B =10189.194644 C =12171.718729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.150 3.850 5 N -0.505 5.505 6 C 0.365 3.635 7 O -0.460 6.460 8 C -0.199 4.199 9 C 0.563 3.437 10 O -0.517 6.517 11 N -0.712 5.712 12 C 0.110 3.890 13 H 0.107 0.893 14 C 0.042 3.958 15 O -0.357 6.357 16 C 0.044 3.956 17 C 0.126 3.874 18 N -0.602 5.602 19 C -0.218 4.218 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.157 3.843 28 C -0.114 4.114 29 C -0.027 4.027 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.405 0.595 37 H 0.401 0.599 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.255 0.745 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 0.259 -21.772 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.154 4.154 4 C -0.008 4.008 5 N -0.223 5.223 6 C 0.185 3.815 7 O -0.267 6.267 8 C -0.206 4.206 9 C 0.349 3.651 10 O -0.394 6.394 11 N -0.365 5.365 12 C 0.005 3.995 13 H 0.125 0.875 14 C -0.037 4.037 15 O -0.274 6.274 16 C 0.004 3.996 17 C 0.000 4.000 18 N -0.329 5.329 19 C -0.345 4.345 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.744 3.256 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.030 3.970 28 C -0.153 4.153 29 C -0.053 4.053 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.181 0.819 36 H 0.265 0.735 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.262 1.578 -22.229 22.321 hybrid contribution -0.595 -1.572 1.306 2.129 sum 0.667 0.006 -20.923 20.933 Atomic orbital electron populations 1.21792 0.94186 1.02354 1.02467 1.20494 0.96504 0.90953 1.03826 1.20890 1.02173 0.98734 0.93565 1.22670 0.91496 0.88683 0.97934 1.67360 1.14850 1.08750 1.31362 1.19180 0.91772 0.84328 0.86262 1.84729 1.27984 1.18710 1.95300 1.21136 1.09013 0.95657 0.94782 1.17827 0.78130 0.86242 0.82884 1.90829 1.44768 1.16791 1.86974 1.45856 1.67985 1.17510 1.05131 1.22745 0.95840 0.97926 0.82981 0.87455 1.23829 0.96176 1.01097 0.82585 1.88790 1.38308 1.79673 1.20661 1.23811 0.83064 0.98964 0.93807 1.22437 0.95871 0.90256 0.91460 1.45404 1.31844 1.00424 1.55264 1.18901 1.01319 0.90434 1.23820 0.89881 1.24837 0.98317 0.96206 1.00952 1.69861 1.31466 1.04388 1.50768 0.86112 0.81546 0.78687 0.79256 1.21413 1.21608 1.20600 1.22386 0.91490 0.93040 0.90044 1.22590 0.98038 1.02733 0.91896 1.21692 0.92281 0.92139 0.99172 0.92462 0.91810 0.92276 0.90277 0.90210 0.81862 0.73512 0.76328 0.92098 0.89101 0.93534 0.93995 0.93554 0.94494 0.92082 0.89621 0.89590 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 37.16 0.37 -0.42 16 2 C -0.08 -0.40 6.08 -27.89 -0.17 -0.56 16 3 C -0.15 -1.07 5.14 -104.54 -0.54 -1.61 16 4 C 0.15 1.17 10.84 -17.49 -0.19 0.98 16 5 N -0.51 -5.43 10.37 -12.98 -0.13 -5.56 16 6 C 0.36 4.22 7.77 -16.61 -0.13 4.09 16 7 O -0.46 -5.44 11.66 -39.74 -0.46 -5.91 16 8 C -0.20 -2.15 5.90 -104.69 -0.62 -2.76 16 9 C 0.56 7.11 7.77 -12.47 -0.10 7.01 16 10 O -0.52 -8.08 14.84 -16.49 -0.24 -8.33 16 11 N -0.71 -8.13 5.14 -52.76 -0.27 -8.40 16 12 C 0.11 1.49 3.51 -65.77 -0.23 1.26 16 13 H 0.11 1.56 7.55 -51.93 -0.39 1.17 16 14 C 0.04 0.60 7.42 38.24 0.28 0.88 16 15 O -0.36 -6.42 11.32 -35.23 -0.40 -6.82 16 16 C 0.04 0.84 1.66 -90.69 -0.15 0.69 16 17 C 0.13 2.64 8.20 -8.04 -0.07 2.58 16 18 N -0.60 -15.14 3.73 -184.63 -0.69 -15.83 16 19 C -0.22 -5.94 10.73 -15.06 -0.16 -6.10 16 20 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.48 11.82 55.49 0.66 -25.82 16 23 Si 0.91 21.45 29.56 -169.99 -5.02 16.42 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.16 3.63 6.73 -7.91 -0.05 3.58 16 28 C -0.11 -1.79 6.20 -25.50 -0.16 -1.94 16 29 C -0.03 -0.22 9.31 -38.89 -0.36 -0.58 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.41 3.10 9.06 45.56 0.41 3.51 16 37 H 0.40 3.72 6.51 -40.82 -0.27 3.46 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.49 7.40 -51.93 -0.38 1.11 16 45 H 0.09 1.34 7.45 -51.93 -0.39 0.95 16 46 H 0.09 1.33 7.82 -51.93 -0.41 0.93 16 47 H 0.14 0.89 6.52 -52.48 -0.34 0.54 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -34.59 390.01 -9.00 -43.59 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.94 Total: 3.96 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.37 Total: 6.82 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.44 Total: -55.61 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.11 Total: -21.06 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.59 -9.00 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053969405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.949 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds