Wall clock time and date at job start Wed Apr 1 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47219 * 2 1 4 4 C 1.38355 * 120.27515 * 270.02093 * 3 2 1 5 5 N 1.31877 * 121.19164 * 179.97438 * 4 3 2 6 6 C 1.32238 * 121.79471 * 359.65688 * 5 4 3 7 7 O 1.35426 * 119.80241 * 180.31224 * 6 5 4 8 8 C 1.40276 * 120.40260 * 0.62906 * 6 5 4 9 9 C 1.47526 * 120.60187 * 179.68014 * 8 6 5 10 10 O 1.21599 * 119.99561 * 359.72743 * 9 8 6 11 11 N 1.34775 * 120.00283 * 179.72254 * 9 8 6 12 12 C 1.46500 * 119.99973 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.93226 * 31.35593 * 12 11 9 14 14 C 1.55056 * 110.87236 * 267.71421 * 12 11 9 15 15 O 1.44608 * 103.66846 * 205.32310 * 14 12 11 16 16 C 1.42834 * 106.73394 * 39.08740 * 15 14 12 17 17 C 1.52650 * 115.96348 * 202.47035 * 16 15 14 18 18 N 1.47224 * 87.78301 * 218.41065 * 17 16 15 19 19 C 1.36935 * 135.96655 * 206.38126 * 18 17 16 20 20 H 1.07995 * 120.00083 * 6.48200 * 19 18 17 21 21 C 1.38817 * 119.99741 * 186.48533 * 19 18 17 22 22 N 1.31620 * 119.99762 * 6.40711 * 21 19 18 23 23 Si 1.86796 * 119.99659 * 186.41024 * 21 19 18 24 24 H 1.48494 * 109.47314 * 84.99017 * 23 21 19 25 25 H 1.48503 * 109.47018 * 204.98577 * 23 21 19 26 26 H 1.48499 * 109.47419 * 324.98234 * 23 21 19 27 27 C 1.47225 * 88.06172 * 26.63735 * 18 17 16 28 28 C 1.53318 * 108.32839 * 334.30342 * 16 15 14 29 29 C 1.38338 * 120.27157 * 89.99919 * 3 2 1 30 30 H 1.09000 * 109.46868 * 59.99773 * 1 2 3 31 31 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47362 * 299.99924 * 1 2 3 33 33 H 1.08996 * 109.47362 * 240.00076 * 2 1 3 34 34 H 1.09000 * 109.46868 * 120.00227 * 2 1 3 35 35 H 1.07999 * 119.40202 * 359.97438 * 4 3 2 36 36 H 0.96702 * 114.00283 * 270.32117 * 7 6 5 37 37 H 0.96992 * 120.00036 * 0.02562 * 11 9 8 38 38 H 1.09007 * 110.58732 * 323.86828 * 14 12 11 39 39 H 1.09003 * 110.58606 * 86.62425 * 14 12 11 40 40 H 1.09000 * 113.49520 * 103.68213 * 17 16 15 41 41 H 1.08995 * 113.56307 * 333.15030 * 17 16 15 42 42 H 0.97006 * 119.99259 * 180.02562 * 22 21 19 43 43 H 1.08999 * 113.49998 * 88.09597 * 27 18 17 44 44 H 1.08998 * 113.49567 * 218.64000 * 27 18 17 45 45 H 1.09001 * 110.56290 * 120.19416 * 28 16 15 46 46 H 1.09001 * 110.56534 * 243.04368 * 28 16 15 47 47 H 1.08004 * 120.82009 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0785 -1.1949 5 7 2.7035 3.3219 -1.2159 6 6 2.9353 3.9979 -0.1033 7 8 3.3798 5.2753 -0.1721 8 6 2.7297 3.3978 1.1478 9 6 2.9936 4.1456 2.3919 10 8 3.3977 5.2912 2.3384 11 7 2.7866 3.5591 3.5875 12 6 3.0492 4.3015 4.8229 13 1 2.8636 5.3666 4.6840 14 6 4.4970 4.0533 5.3194 15 8 4.4163 4.2955 6.7428 16 6 3.1712 3.7510 7.1827 17 6 2.6133 4.3239 8.4830 18 7 2.1693 2.9626 8.8254 19 6 1.1803 2.4149 9.5980 20 1 0.4342 3.0509 10.0509 21 6 1.1369 1.0420 9.7992 22 7 2.1139 0.2805 9.3543 23 14 -0.3083 0.2756 10.7010 24 1 -1.4146 0.0269 9.7422 25 1 0.1151 -1.0098 11.3123 26 1 -0.7742 1.2001 11.7656 27 6 3.2583 2.4483 7.9787 28 6 2.2024 3.7415 5.9944 29 6 2.2648 2.0783 1.1948 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0827 1.5644 -2.1271 36 1 4.3432 5.3558 -0.1944 37 1 2.4646 2.6452 3.6301 38 1 4.7988 3.0246 5.1223 39 1 5.1888 4.7515 4.8482 40 1 1.7917 5.0241 8.3321 41 1 3.3806 4.7122 9.1526 42 1 2.0833 -0.6788 9.4946 43 1 4.2019 2.3262 8.5106 44 1 2.9808 1.5658 7.4023 45 1 1.8730 2.7255 5.7771 46 1 1.3475 4.3882 6.1922 47 1 2.0911 1.5859 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053969405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:19 Heat of formation + Delta-G solvation = -47.136862 kcal Electronic energy + Delta-G solvation = -30456.787856 eV Core-core repulsion = 26220.063973 eV Total energy + Delta-G solvation = -4236.723882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09601 -41.49995 -40.08118 -38.42265 -37.93837 -35.78605 -35.20171 -34.18454 -33.64761 -31.32946 -30.10360 -29.80187 -27.47375 -26.59873 -25.94496 -25.00994 -24.02708 -23.57678 -22.21940 -21.60632 -20.49831 -19.93220 -18.79896 -18.62505 -18.35916 -17.34750 -17.12469 -17.03896 -16.65040 -16.42114 -16.09073 -15.80811 -15.73528 -15.47110 -14.81246 -14.76180 -14.52466 -14.36220 -14.33119 -14.16488 -14.05017 -13.92869 -13.35329 -13.02840 -12.85959 -12.81339 -12.80278 -12.67198 -12.54170 -12.39600 -12.34774 -11.98240 -11.84362 -11.81577 -11.48717 -11.26687 -11.02286 -10.87697 -10.49624 -10.45896 -10.16784 -9.81431 -8.99838 -7.94839 -5.28540 -0.52579 0.00492 1.47955 1.49909 1.57975 1.70228 1.84757 2.43123 2.46549 2.71829 2.88897 3.25432 3.33853 3.40662 3.52160 3.62230 3.64086 3.67558 3.70027 3.81455 4.04184 4.07797 4.14777 4.28141 4.48961 4.52850 4.63676 4.66711 4.67354 4.75110 4.81141 4.82538 4.85583 4.90737 4.92224 4.94649 5.04635 5.14485 5.17550 5.32884 5.33900 5.37345 5.43104 5.49041 5.83328 6.04464 6.33469 6.52736 6.78484 6.86603 7.04104 7.55002 8.54664 9.23982 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.002747 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.795722 B =10189.194644 C =12171.718729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 C -0.143 4.143 4 C 0.151 3.849 5 N -0.527 5.527 6 C 0.347 3.653 7 O -0.479 6.479 8 C -0.213 4.213 9 C 0.566 3.434 10 O -0.552 6.552 11 N -0.701 5.701 12 C 0.126 3.874 13 H 0.103 0.897 14 C 0.039 3.961 15 O -0.371 6.371 16 C 0.071 3.929 17 C 0.122 3.878 18 N -0.625 5.625 19 C -0.232 4.232 20 H 0.089 0.911 21 C -0.061 4.061 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.271 1.271 27 C 0.155 3.845 28 C -0.107 4.107 29 C -0.025 4.025 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.195 0.805 36 H 0.416 0.584 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.251 0.749 43 H 0.009 0.991 44 H 0.043 0.957 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -0.637 -23.148 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.145 4.145 4 C -0.006 4.006 5 N -0.246 5.246 6 C 0.168 3.832 7 O -0.289 6.289 8 C -0.220 4.220 9 C 0.354 3.646 10 O -0.430 6.430 11 N -0.355 5.355 12 C 0.021 3.979 13 H 0.121 0.879 14 C -0.039 4.039 15 O -0.288 6.288 16 C 0.030 3.970 17 C -0.004 4.004 18 N -0.353 5.353 19 C -0.359 4.359 20 H 0.107 0.893 21 C -0.254 4.254 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.205 1.205 25 H -0.222 1.222 26 H -0.196 1.196 27 C 0.029 3.971 28 C -0.145 4.145 29 C -0.050 4.050 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.212 0.788 36 H 0.278 0.722 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.059 0.691 -23.616 23.626 hybrid contribution -0.166 -1.311 1.679 2.137 sum -0.107 -0.619 -21.937 21.946 Atomic orbital electron populations 1.21801 0.94335 1.02780 1.01984 1.20559 0.96175 0.89476 1.05216 1.21149 1.00848 0.99633 0.92829 1.23271 0.89921 0.87802 0.99600 1.67394 1.15905 1.10067 1.31193 1.19347 0.92596 0.84394 0.86898 1.84676 1.29270 1.19554 1.95417 1.20973 1.10899 0.96659 0.93482 1.18080 0.77238 0.85863 0.83457 1.90809 1.46436 1.18340 1.87446 1.45686 1.67707 1.17890 1.04191 1.22438 0.94658 0.97754 0.83077 0.87894 1.24031 0.97100 1.02093 0.80658 1.88773 1.37827 1.79305 1.22939 1.23363 0.84198 0.95326 0.94146 1.22562 0.96438 0.89038 0.92355 1.45687 1.31854 1.02506 1.55284 1.19305 1.01959 0.90967 1.23689 0.89341 1.25675 1.00922 0.96664 1.02179 1.70037 1.33357 1.04244 1.52266 0.85048 0.78431 0.77317 0.78217 1.20502 1.22229 1.19624 1.22312 0.89804 0.94634 0.90358 1.22503 0.97591 1.03199 0.91196 1.21957 0.91322 0.91107 1.00644 0.92370 0.90967 0.93384 0.88254 0.89563 0.78797 0.72193 0.74900 0.91193 0.87774 0.91506 0.94460 0.94045 0.97303 0.93850 0.89439 0.88945 0.81905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 71.98 0.71 -0.48 16 2 C -0.08 -0.51 6.08 29.85 0.18 -0.33 16 3 C -0.14 -1.65 5.14 -19.81 -0.10 -1.75 16 4 C 0.15 2.01 10.84 84.71 0.92 2.93 16 5 N -0.53 -10.74 10.37 -308.00 -3.19 -13.94 16 6 C 0.35 7.89 7.77 85.13 0.66 8.55 16 7 O -0.48 -11.55 11.66 -66.40 -0.77 -12.33 16 8 C -0.21 -4.39 5.90 -19.91 -0.12 -4.50 16 9 C 0.57 13.79 7.77 86.69 0.67 14.46 16 10 O -0.55 -17.09 14.84 16.79 0.25 -16.84 16 11 N -0.70 -14.94 5.14 -439.09 -2.26 -17.19 16 12 C 0.13 3.25 3.51 46.39 0.16 3.41 16 13 H 0.10 2.84 7.55 -2.38 -0.02 2.82 16 14 C 0.04 1.07 7.42 72.69 0.54 1.61 16 15 O -0.37 -13.09 11.32 -148.98 -1.69 -14.77 16 16 C 0.07 2.64 1.66 -10.83 -0.02 2.62 16 17 C 0.12 5.05 8.20 83.40 0.68 5.74 16 18 N -0.63 -31.73 3.73 -739.17 -2.75 -34.49 16 19 C -0.23 -12.66 10.73 84.04 0.90 -11.76 16 20 H 0.09 4.60 7.84 -2.91 -0.02 4.58 16 21 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 22 N -0.95 -55.72 11.82 21.65 0.26 -55.47 16 23 Si 0.98 43.99 29.56 68.60 2.03 46.02 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.16 7.36 6.73 83.48 0.56 7.93 16 28 C -0.11 -3.19 6.20 31.39 0.19 -3.00 16 29 C -0.02 -0.35 9.31 22.72 0.21 -0.14 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16 34 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 35 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.42 6.70 9.06 -74.06 -0.67 6.03 16 37 H 0.41 6.83 6.51 -92.71 -0.60 6.22 16 38 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.07 2.50 7.91 -2.39 -0.02 2.48 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 44 H 0.04 2.18 7.40 -2.39 -0.02 2.16 16 45 H 0.09 2.62 7.45 -2.39 -0.02 2.60 16 46 H 0.09 2.70 7.82 -2.39 -0.02 2.68 16 47 H 0.16 1.58 6.52 -2.91 -0.02 1.56 16 Total: -1.00 -75.44 390.01 -1.76 -77.20 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.26 Total: 19.39 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 6.63 Total: 22.42 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -7.95 Total: -121.09 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -2.21 Total: -43.94 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.44 -1.76 -77.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053969405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.062 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds