Wall clock time and date at job start Wed Apr 1 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47225 * 2 1 4 4 C 1.52994 * 109.47467 * 239.99482 * 2 1 3 5 5 O 1.45211 * 109.46624 * 119.99879 * 2 1 3 6 6 C 1.34226 * 117.00030 * 60.00202 * 5 2 1 7 7 O 1.20822 * 119.99985 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99757 * 179.97438 * 6 5 2 9 9 H 1.08994 * 109.46955 * 60.00323 * 8 6 5 10 10 N 1.46507 * 109.46706 * 179.97438 * 8 6 5 11 11 S 1.65600 * 119.99674 * 214.99891 * 10 8 6 12 12 O 1.42105 * 106.39902 * 178.54335 * 11 10 8 13 13 O 1.42105 * 106.40323 * 311.46489 * 11 10 8 14 14 C 1.76197 * 107.21923 * 65.00368 * 11 10 8 15 15 H 1.08004 * 120.00124 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00096 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99994 * 179.97438 * 16 14 11 18 18 Si 1.86795 * 120.00078 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47279 * 89.99292 * 18 16 14 20 20 H 1.48504 * 109.47329 * 209.99821 * 18 16 14 21 21 H 1.48501 * 109.47024 * 329.99707 * 18 16 14 22 22 C 1.52997 * 109.47345 * 299.99893 * 8 6 5 23 23 C 1.52996 * 109.46975 * 64.99879 * 22 8 6 24 24 C 1.53000 * 109.47328 * 180.02562 * 23 22 8 25 25 C 1.52997 * 109.47060 * 60.00126 * 24 23 22 26 26 C 1.53006 * 109.47127 * 300.00449 * 25 24 23 27 27 C 1.52997 * 109.47164 * 59.99836 * 26 25 24 28 28 H 1.08999 * 109.47543 * 300.00081 * 1 2 3 29 29 H 1.09001 * 109.46760 * 60.00759 * 1 2 3 30 30 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47327 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47250 * 299.99873 * 3 2 1 33 33 H 1.08999 * 109.46926 * 59.99541 * 3 2 1 34 34 H 1.09000 * 109.47660 * 300.00586 * 4 2 1 35 35 H 1.09003 * 109.47056 * 60.00567 * 4 2 1 36 36 H 1.08998 * 109.47486 * 180.02562 * 4 2 1 37 37 H 0.96993 * 120.00243 * 35.00544 * 10 8 6 38 38 H 0.96997 * 119.99748 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.47280 * 185.00414 * 22 8 6 40 40 H 1.09004 * 109.47368 * 60.00217 * 23 22 8 41 41 H 1.09001 * 109.47372 * 300.00372 * 23 22 8 42 42 H 1.09002 * 109.47398 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47194 * 300.00476 * 24 23 22 44 44 H 1.08998 * 109.47533 * 59.99948 * 25 24 23 45 45 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47002 * 299.99574 * 26 25 24 47 47 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 48 48 H 1.09002 * 109.47045 * 180.02562 * 27 26 25 49 49 H 1.09001 * 109.47375 * 59.99966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6532 -1.9684 1.3380 7 8 0.9559 -2.5025 0.5084 8 6 2.1181 -2.7437 2.5438 9 1 1.7546 -2.2588 3.4497 10 7 1.5936 -4.1101 2.4777 11 16 1.1590 -4.8982 3.8677 12 8 0.6647 -6.1698 3.4702 13 8 2.2387 -4.7335 4.7768 14 6 -0.2084 -4.0259 4.5561 15 1 -0.5952 -3.1487 4.0586 16 6 -0.7847 -4.4630 5.7299 17 7 -1.8050 -3.8116 6.2440 18 14 -0.1154 -5.9796 6.5908 19 1 0.9434 -5.5770 7.5511 20 1 -1.2147 -6.6593 7.3222 21 1 0.4573 -6.9083 5.5835 22 6 3.6474 -2.7843 2.5655 23 6 4.1924 -1.3681 2.7601 24 6 5.7218 -1.4085 2.7813 25 6 6.2353 -1.9750 1.4560 26 6 5.6901 -3.3913 1.2613 27 6 4.1608 -3.3508 1.2402 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 1.5011 -4.5531 1.6198 38 1 -2.2101 -4.1189 7.0700 39 1 3.9823 -3.4186 3.3862 40 1 3.8263 -0.9643 3.7041 41 1 3.8574 -0.7338 1.9394 42 1 6.1101 -0.3996 2.9203 43 1 6.0571 -2.0429 3.6018 44 1 5.8999 -1.3407 0.6354 45 1 7.3247 -2.0043 1.4711 46 1 6.0255 -4.0257 2.0818 47 1 6.0556 -3.7947 0.3170 48 1 3.7725 -4.3598 1.1020 49 1 3.8255 -2.7164 0.4197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:41 Heat of formation + Delta-G solvation = -192.966707 kcal Electronic energy + Delta-G solvation = -31763.000470 eV Core-core repulsion = 27623.104131 eV Total energy + Delta-G solvation = -4139.896339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02412 -38.61926 -37.02549 -35.69406 -34.64181 -34.47979 -33.98711 -33.05654 -30.77783 -30.44167 -27.50155 -27.43312 -26.58699 -26.22690 -22.85420 -22.53159 -21.18907 -19.89091 -19.29425 -19.16447 -17.56766 -17.14820 -16.66382 -16.41328 -16.06639 -15.60607 -15.15953 -15.00155 -14.44353 -14.14962 -14.05163 -13.93270 -13.64132 -13.52309 -13.43818 -13.21706 -12.90610 -12.60776 -12.49902 -12.21602 -12.08863 -12.03148 -11.96401 -11.80569 -11.60567 -11.45073 -11.38670 -11.33353 -11.04150 -10.90742 -10.81523 -10.67079 -10.55343 -10.49072 -10.33042 -10.08952 -9.99943 -9.89074 -9.74835 -9.28962 -9.23185 -8.71281 -6.82621 -5.37907 1.91490 2.39814 2.77533 3.06216 3.16181 3.25281 3.93211 4.15841 4.57072 4.62317 4.67071 4.68394 4.70954 4.81178 4.85160 4.85980 5.20619 5.23027 5.29740 5.37422 5.44456 5.45853 5.46463 5.58344 5.60252 5.62400 5.65550 5.67703 5.74866 5.78378 5.78956 5.90025 5.98411 6.01799 6.10122 6.17497 6.22312 6.25845 6.27522 6.30740 6.33826 6.37315 6.50957 6.56097 6.73523 7.44264 7.61139 7.99806 8.17070 8.67567 10.29605 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.004646 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.323272 B = 6024.819007 C = 7295.116045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.342 6.342 6 C 0.468 3.532 7 O -0.495 6.495 8 C 0.176 3.824 9 H 0.127 0.873 10 N -1.105 6.105 11 S 2.675 3.325 12 O -1.002 7.002 13 O -1.004 7.004 14 C -1.018 5.018 15 H 0.121 0.879 16 C 0.154 3.846 17 N -0.821 5.821 18 Si 0.802 3.198 19 H -0.245 1.245 20 H -0.254 1.254 21 H -0.220 1.220 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.117 4.117 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.413 0.587 38 H 0.281 0.719 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.971 9.766 -11.719 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.077 3.923 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.259 6.259 6 C 0.310 3.690 7 O -0.381 6.381 8 C 0.065 3.935 9 H 0.145 0.855 10 N -0.860 5.860 11 S 2.777 3.223 12 O -0.992 6.992 13 O -0.994 6.994 14 C -1.153 5.153 15 H 0.139 0.861 16 C -0.066 4.066 17 N -0.449 5.449 18 Si 0.621 3.379 19 H -0.168 1.168 20 H -0.178 1.178 21 H -0.143 1.143 22 C -0.121 4.121 23 C -0.164 4.164 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.155 4.155 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.055 8.983 -11.380 18.855 hybrid contribution -0.720 -0.201 -0.011 0.748 sum 11.335 8.782 -11.391 18.312 Atomic orbital electron populations 1.22505 0.94030 1.05083 1.02620 1.22165 0.94501 0.92229 0.83384 1.21838 1.02044 0.92805 1.02961 1.22483 1.01490 1.03291 0.96635 1.86631 1.69063 1.25341 1.44841 1.23810 0.76954 0.80657 0.87599 1.90545 1.34724 1.69956 1.42906 1.20299 0.94772 0.82884 0.95535 0.85525 1.55578 1.81722 1.22470 1.26277 1.01465 0.75755 0.73441 0.71689 1.93492 1.81798 1.41556 1.82394 1.93420 1.57093 1.87012 1.61877 1.30436 1.35757 1.28971 1.20091 0.86127 1.24415 0.92240 0.95434 0.94490 1.69986 1.18673 1.37508 1.18778 0.87862 0.81705 0.83917 0.84377 1.16841 1.17843 1.14253 1.21720 0.91670 0.98770 0.99924 1.21794 0.95190 0.95892 1.03480 1.21497 0.95726 1.00652 0.97515 1.21530 0.99563 0.96493 0.97944 1.21510 0.95326 0.97087 1.01587 1.21622 0.95808 1.01389 0.96667 0.91773 0.91377 0.89555 0.91554 0.90666 0.91362 0.89713 0.91364 0.92102 0.75287 0.90843 0.87673 0.91220 0.89722 0.92133 0.91850 0.92286 0.92452 0.91650 0.92307 0.91473 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 8.37 37.16 0.31 -1.95 16 2 C 0.11 1.30 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 4 C -0.18 -1.95 8.37 37.15 0.31 -1.64 16 5 O -0.34 -4.64 7.03 -39.25 -0.28 -4.92 16 6 C 0.47 7.46 5.10 36.01 0.18 7.65 16 7 O -0.49 -8.59 11.49 -18.75 -0.22 -8.81 16 8 C 0.18 3.00 2.49 -69.08 -0.17 2.83 16 9 H 0.13 2.24 7.85 -51.93 -0.41 1.83 16 10 N -1.11 -21.50 4.75 -5.88 -0.03 -21.53 16 11 S 2.68 65.73 4.15 -107.50 -0.45 65.29 16 12 O -1.00 -26.94 16.02 -57.17 -0.92 -27.86 16 13 O -1.00 -25.39 16.04 -57.17 -0.92 -26.31 16 14 C -1.02 -28.15 10.11 30.60 0.31 -27.84 16 15 H 0.12 3.39 8.06 -52.48 -0.42 2.96 16 16 C 0.15 4.39 5.47 -17.82 -0.10 4.30 16 17 N -0.82 -23.53 13.96 55.43 0.77 -22.76 16 18 Si 0.80 20.39 26.54 -169.99 -4.51 15.88 16 19 H -0.24 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.25 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.22 -5.73 5.61 56.52 0.32 -5.41 16 22 C -0.10 -1.47 2.17 -90.62 -0.20 -1.67 16 23 C -0.13 -1.55 4.84 -26.73 -0.13 -1.68 16 24 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 25 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 26 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 27 C -0.12 -1.53 4.77 -26.73 -0.13 -1.65 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.28 5.89 -51.93 -0.31 0.97 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.10 5.89 -51.93 -0.31 0.80 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.41 7.41 8.06 -34.47 -0.28 7.13 16 38 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.11 1.70 7.59 -51.93 -0.39 1.31 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.01 5.46 -51.93 -0.28 0.72 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.91 7.63 -51.93 -0.40 0.52 16 49 H 0.06 0.73 7.07 -51.93 -0.37 0.36 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -31.94 385.04 -8.89 -40.83 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.30 Total: 9.87 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 0.14 Total: -25.50 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.75 Total: -44.29 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -2.32 Total: -67.89 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.51 Total: 15.88 kcal Atomic # 16 Polarization: 65.73 SS G_CDS: -0.45 Total: 65.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.94 -8.89 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.135 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds