Wall clock time and date at job start Wed Apr 1 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47225 * 2 1 4 4 C 1.52994 * 109.47467 * 239.99482 * 2 1 3 5 5 O 1.45211 * 109.46624 * 119.99879 * 2 1 3 6 6 C 1.34226 * 117.00030 * 60.00202 * 5 2 1 7 7 O 1.20822 * 119.99985 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99757 * 179.97438 * 6 5 2 9 9 H 1.08994 * 109.46955 * 60.00323 * 8 6 5 10 10 N 1.46507 * 109.46706 * 179.97438 * 8 6 5 11 11 S 1.65600 * 119.99674 * 214.99891 * 10 8 6 12 12 O 1.42105 * 106.39902 * 178.54335 * 11 10 8 13 13 O 1.42105 * 106.40323 * 311.46489 * 11 10 8 14 14 C 1.76197 * 107.21923 * 65.00368 * 11 10 8 15 15 H 1.08004 * 120.00124 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00096 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99994 * 179.97438 * 16 14 11 18 18 Si 1.86795 * 120.00078 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47279 * 89.99292 * 18 16 14 20 20 H 1.48504 * 109.47329 * 209.99821 * 18 16 14 21 21 H 1.48501 * 109.47024 * 329.99707 * 18 16 14 22 22 C 1.52997 * 109.47345 * 299.99893 * 8 6 5 23 23 C 1.52996 * 109.46975 * 64.99879 * 22 8 6 24 24 C 1.53000 * 109.47328 * 180.02562 * 23 22 8 25 25 C 1.52997 * 109.47060 * 60.00126 * 24 23 22 26 26 C 1.53006 * 109.47127 * 300.00449 * 25 24 23 27 27 C 1.52997 * 109.47164 * 59.99836 * 26 25 24 28 28 H 1.08999 * 109.47543 * 300.00081 * 1 2 3 29 29 H 1.09001 * 109.46760 * 60.00759 * 1 2 3 30 30 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47327 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47250 * 299.99873 * 3 2 1 33 33 H 1.08999 * 109.46926 * 59.99541 * 3 2 1 34 34 H 1.09000 * 109.47660 * 300.00586 * 4 2 1 35 35 H 1.09003 * 109.47056 * 60.00567 * 4 2 1 36 36 H 1.08998 * 109.47486 * 180.02562 * 4 2 1 37 37 H 0.96993 * 120.00243 * 35.00544 * 10 8 6 38 38 H 0.96997 * 119.99748 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.47280 * 185.00414 * 22 8 6 40 40 H 1.09004 * 109.47368 * 60.00217 * 23 22 8 41 41 H 1.09001 * 109.47372 * 300.00372 * 23 22 8 42 42 H 1.09002 * 109.47398 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47194 * 300.00476 * 24 23 22 44 44 H 1.08998 * 109.47533 * 59.99948 * 25 24 23 45 45 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47002 * 299.99574 * 26 25 24 47 47 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 48 48 H 1.09002 * 109.47045 * 180.02562 * 27 26 25 49 49 H 1.09001 * 109.47375 * 59.99966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6532 -1.9684 1.3380 7 8 0.9559 -2.5025 0.5084 8 6 2.1181 -2.7437 2.5438 9 1 1.7546 -2.2588 3.4497 10 7 1.5936 -4.1101 2.4777 11 16 1.1590 -4.8982 3.8677 12 8 0.6647 -6.1698 3.4702 13 8 2.2387 -4.7335 4.7768 14 6 -0.2084 -4.0259 4.5561 15 1 -0.5952 -3.1487 4.0586 16 6 -0.7847 -4.4630 5.7299 17 7 -1.8050 -3.8116 6.2440 18 14 -0.1154 -5.9796 6.5908 19 1 0.9434 -5.5770 7.5511 20 1 -1.2147 -6.6593 7.3222 21 1 0.4573 -6.9083 5.5835 22 6 3.6474 -2.7843 2.5655 23 6 4.1924 -1.3681 2.7601 24 6 5.7218 -1.4085 2.7813 25 6 6.2353 -1.9750 1.4560 26 6 5.6901 -3.3913 1.2613 27 6 4.1608 -3.3508 1.2402 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 1.5011 -4.5531 1.6198 38 1 -2.2101 -4.1189 7.0700 39 1 3.9823 -3.4186 3.3862 40 1 3.8263 -0.9643 3.7041 41 1 3.8574 -0.7338 1.9394 42 1 6.1101 -0.3996 2.9203 43 1 6.0571 -2.0429 3.6018 44 1 5.8999 -1.3407 0.6354 45 1 7.3247 -2.0043 1.4711 46 1 6.0255 -4.0257 2.0818 47 1 6.0556 -3.7947 0.3170 48 1 3.7725 -4.3598 1.1020 49 1 3.8255 -2.7164 0.4197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:39 Heat of formation + Delta-G solvation = -214.024364 kcal Electronic energy + Delta-G solvation = -31763.913599 eV Core-core repulsion = 27623.104131 eV Total energy + Delta-G solvation = -4140.809467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.21775 -39.67453 -38.17531 -37.74053 -36.56166 -35.97989 -35.22734 -35.00064 -31.88308 -31.49009 -28.64680 -28.36071 -28.24921 -27.59505 -23.96241 -23.49190 -22.25975 -21.27168 -20.76008 -20.41977 -19.43986 -18.91337 -18.12955 -17.76068 -17.37296 -16.97784 -16.77949 -16.19453 -15.85635 -15.48426 -15.40635 -15.06946 -15.04057 -14.90829 -14.63788 -14.59168 -14.40749 -13.79621 -13.49529 -13.35345 -13.34238 -13.08824 -13.01708 -12.97224 -12.88642 -12.83107 -12.81945 -12.75677 -12.61744 -12.45677 -12.32279 -11.98303 -11.90056 -11.76409 -11.55873 -11.43411 -11.35524 -11.16904 -11.09289 -10.97046 -10.85630 -10.36780 -8.99230 -7.57631 -0.00575 1.04032 1.11926 1.13853 1.20399 1.57198 1.87553 2.37126 2.42718 3.22078 3.47104 3.57389 3.71105 3.77862 3.82807 3.91282 3.99074 4.06695 4.10996 4.32364 4.38147 4.45991 4.56655 4.61139 4.62999 4.63722 4.71708 4.77279 4.79527 4.83697 4.86779 4.92072 4.93846 5.07141 5.15433 5.19603 5.28285 5.30436 5.33039 5.33647 5.35775 5.39318 5.44232 5.49957 5.50458 5.70580 5.94134 6.04652 6.49402 6.76277 8.18519 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.004646 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.323272 B = 6024.819007 C = 7295.116045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.103 3.897 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.337 6.337 6 C 0.475 3.525 7 O -0.512 6.512 8 C 0.162 3.838 9 H 0.114 0.886 10 N -1.096 6.096 11 S 2.701 3.299 12 O -1.025 7.025 13 O -1.011 7.011 14 C -1.042 5.042 15 H 0.102 0.898 16 C 0.110 3.890 17 N -0.851 5.851 18 Si 0.825 3.175 19 H -0.231 1.231 20 H -0.220 1.220 21 H -0.231 1.231 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.116 4.116 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.421 0.579 38 H 0.292 0.708 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.921 10.984 -12.818 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.067 3.933 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.254 6.254 6 C 0.317 3.683 7 O -0.400 6.400 8 C 0.053 3.947 9 H 0.132 0.868 10 N -0.855 5.855 11 S 2.801 3.199 12 O -1.015 7.015 13 O -1.001 7.001 14 C -1.174 5.174 15 H 0.120 0.880 16 C -0.108 4.108 17 N -0.480 5.480 18 Si 0.641 3.359 19 H -0.154 1.154 20 H -0.142 1.142 21 H -0.153 1.153 22 C -0.118 4.118 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.154 4.154 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.257 0.743 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.985 10.224 -12.461 21.340 hybrid contribution -1.367 -0.467 0.241 1.465 sum 12.618 9.757 -12.220 20.093 Atomic orbital electron populations 1.22507 0.94889 1.03280 1.03627 1.22574 0.94088 0.93833 0.82792 1.21867 1.02773 0.90370 1.04079 1.22446 1.02158 1.01847 0.97049 1.86615 1.68718 1.23885 1.46169 1.23424 0.76612 0.81415 0.86834 1.90554 1.35445 1.70581 1.43449 1.20558 0.96677 0.81551 0.95935 0.86789 1.55094 1.81418 1.23755 1.25191 1.00535 0.74626 0.72668 0.72081 1.93452 1.82239 1.42817 1.83032 1.93401 1.56536 1.87084 1.63071 1.30927 1.37198 1.28845 1.20430 0.88021 1.25167 0.92641 0.97710 0.95238 1.70009 1.19455 1.38833 1.19746 0.87489 0.82890 0.81450 0.84028 1.15428 1.14165 1.15327 1.21703 0.89564 1.00257 1.00303 1.21804 0.96737 0.94152 1.03448 1.21507 0.94000 1.01781 0.97937 1.21523 1.00565 0.95468 0.97573 1.21526 0.93503 0.98196 1.02202 1.21621 0.97530 1.00606 0.95644 0.92394 0.88786 0.92676 0.90413 0.88263 0.91554 0.92336 0.89119 0.90955 0.74308 0.89707 0.89573 0.91806 0.89002 0.90218 0.92519 0.91434 0.90685 0.92260 0.90800 0.92668 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.40 8.37 71.98 0.60 -3.80 16 2 C 0.10 2.18 1.13 -10.80 -0.01 2.17 16 3 C -0.13 -1.90 8.85 71.98 0.64 -1.26 16 4 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 5 O -0.34 -8.92 7.03 -51.38 -0.36 -9.28 16 6 C 0.48 15.34 5.10 71.24 0.36 15.70 16 7 O -0.51 -18.22 11.49 21.98 0.25 -17.96 16 8 C 0.16 5.69 2.49 44.24 0.11 5.80 16 9 H 0.11 4.24 7.85 -2.39 -0.02 4.22 16 10 N -1.10 -43.88 4.75 -172.52 -0.82 -44.70 16 11 S 2.70 135.42 4.15 -56.49 -0.23 135.19 16 12 O -1.03 -55.82 16.02 -128.00 -2.05 -57.87 16 13 O -1.01 -51.70 16.04 -128.00 -2.05 -53.75 16 14 C -1.04 -59.39 10.11 67.73 0.69 -58.71 16 15 H 0.10 6.00 8.06 -2.91 -0.02 5.98 16 16 C 0.11 6.34 5.47 84.65 0.46 6.80 16 17 N -0.85 -49.47 13.96 21.45 0.30 -49.17 16 18 Si 0.82 41.00 26.54 68.60 1.82 42.82 16 19 H -0.23 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.22 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.23 -11.84 5.61 99.48 0.56 -11.28 16 22 C -0.10 -2.86 2.17 -10.80 -0.02 -2.89 16 23 C -0.12 -2.92 4.84 30.59 0.15 -2.77 16 24 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 25 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16 26 C -0.12 -2.35 5.92 30.60 0.18 -2.17 16 27 C -0.12 -2.94 4.77 30.59 0.15 -2.80 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.67 5.89 -2.39 -0.01 1.65 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.48 5.89 -2.39 -0.01 1.46 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.42 15.55 8.06 -96.75 -0.78 14.77 16 38 H 0.29 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.09 2.84 7.59 -2.39 -0.02 2.83 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 2.03 5.46 -2.39 -0.01 2.01 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.05 1.50 7.63 -2.39 -0.02 1.48 16 49 H 0.06 1.50 7.07 -2.39 -0.02 1.48 16 Total: -1.00 -69.56 385.04 1.13 -68.43 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: 0.01 Total: 36.78 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 4.27 Total: -50.49 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -0.52 Total: -93.87 kcal Atomic # 8 Polarization: -134.65 SS G_CDS: -4.21 Total: -138.86 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.82 Total: 42.82 kcal Atomic # 16 Polarization: 135.42 SS G_CDS: -0.23 Total: 135.19 kcal Total: -69.56 1.13 -68.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.595 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds