Wall clock time and date at job start Wed Apr 1 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46907 * 2 1 4 4 C 1.53002 * 109.46969 * 240.00010 * 2 1 3 5 5 C 1.53002 * 109.47064 * 120.00300 * 2 1 3 6 6 H 1.09000 * 109.46876 * 299.99995 * 5 2 1 7 7 C 1.52995 * 109.46827 * 180.02562 * 5 2 1 8 8 N 1.46497 * 109.47213 * 185.00179 * 7 5 2 9 9 C 1.36937 * 120.00601 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99700 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00606 * 179.97438 * 9 8 7 12 12 N 1.31623 * 119.99643 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00143 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47340 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46955 * 120.00376 * 13 11 9 16 16 H 1.48505 * 109.47217 * 239.99920 * 13 11 9 17 17 N 1.46502 * 109.46983 * 59.99745 * 5 2 1 18 18 C 1.34773 * 120.00111 * 274.99764 * 17 5 2 19 19 O 1.21617 * 120.00265 * 0.02562 * 18 17 5 20 20 C 1.47332 * 119.99725 * 180.02562 * 18 17 5 21 21 C 1.39495 * 120.30636 * 359.97438 * 20 18 17 22 22 C 1.38052 * 120.21565 * 180.02562 * 21 20 18 23 23 C 1.38367 * 120.67541 * 359.77848 * 22 21 20 24 24 C 1.38389 * 120.25158 * 0.44548 * 23 22 21 25 25 O 1.35317 * 133.76442 * 179.87819 * 24 23 22 26 26 C 1.34324 * 108.11277 * 179.71121 * 25 24 23 27 27 O 1.35097 * 124.95845 * 180.02562 * 26 25 24 28 28 N 1.30850 * 110.07963 * 359.97438 * 26 25 24 29 29 C 1.35539 * 108.78117 * 0.02562 * 28 26 25 30 30 H 1.09005 * 109.46945 * 299.99623 * 1 2 3 31 31 H 1.08996 * 109.47045 * 59.99522 * 1 2 3 32 32 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47267 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47658 * 300.00103 * 3 2 1 35 35 H 1.09005 * 109.47010 * 60.00417 * 3 2 1 36 36 H 1.08992 * 109.47010 * 300.00427 * 4 2 1 37 37 H 1.09006 * 109.46529 * 59.99925 * 4 2 1 38 38 H 1.08991 * 109.46945 * 179.97438 * 4 2 1 39 39 H 1.09008 * 109.47246 * 304.99920 * 7 5 2 40 40 H 1.08995 * 109.47789 * 65.00022 * 7 5 2 41 41 H 0.97012 * 120.00003 * 359.97438 * 8 7 5 42 42 H 0.96998 * 120.00024 * 180.02562 * 12 11 9 43 43 H 0.97001 * 119.99755 * 94.99889 * 17 5 2 44 44 H 1.07994 * 119.89613 * 0.04073 * 21 20 18 45 45 H 1.08001 * 119.66154 * 180.02562 * 22 21 20 46 46 H 1.08000 * 119.87489 * 180.02562 * 23 22 21 47 47 H 0.96705 * 114.00085 * 269.97214 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7207 1.2495 8 7 4.0585 -1.5130 2.3808 9 6 5.4048 -1.6566 2.5858 10 1 6.1066 -1.1860 1.9131 11 6 5.8676 -2.4069 3.6580 12 7 5.0123 -2.9808 4.4775 13 14 7.7041 -2.6032 3.9371 14 1 8.4466 -1.8659 2.8834 15 1 8.0635 -2.0562 5.2700 16 1 8.0623 -4.0433 3.8801 17 7 1.5517 -2.1025 1.2491 18 6 0.3297 -2.3853 1.7424 19 8 -0.3677 -1.4937 2.1872 20 6 -0.1611 -3.7744 1.7428 21 6 0.6333 -4.8018 1.2337 22 6 0.1712 -6.1027 1.2346 23 6 -1.0794 -6.4074 1.7421 24 6 -1.8891 -5.4059 2.2488 25 8 -3.1266 -5.3898 2.7959 26 6 -3.4219 -4.1210 3.1234 27 8 -4.5776 -3.7181 3.6953 28 7 -2.4263 -3.3324 2.8086 29 6 -1.4372 -4.0772 2.2572 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 3.9337 -1.1548 0.3180 40 1 3.9330 0.3030 1.3393 41 1 3.4281 -1.9360 2.9848 42 1 5.3357 -3.5047 5.2270 43 1 2.1078 -2.8136 0.8941 44 1 1.6130 -4.5790 0.8379 45 1 0.7939 -6.8913 0.8386 46 1 -1.4278 -7.4296 1.7367 47 1 -5.2667 -3.4759 3.0615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284610311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:04 Heat of formation + Delta-G solvation = -15.269126 kcal Electronic energy + Delta-G solvation = -31433.522170 eV Core-core repulsion = 27198.180177 eV Total energy + Delta-G solvation = -4235.341994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.42931 -40.13984 -38.58545 -37.79469 -36.90414 -34.79372 -34.40679 -33.24492 -31.36348 -30.63584 -29.51864 -27.69234 -27.09372 -26.63894 -24.42720 -23.79950 -23.11496 -22.79724 -21.40700 -20.33341 -19.63385 -18.59752 -18.27272 -17.75382 -17.31233 -16.90397 -16.34576 -15.63406 -15.50477 -15.24799 -14.68790 -14.63381 -14.25755 -13.95438 -13.86929 -13.74851 -13.44082 -13.10833 -12.98263 -12.70941 -12.38305 -12.24346 -12.13770 -11.96408 -11.82953 -11.76255 -11.50540 -11.32556 -11.18214 -11.05380 -10.82973 -10.70129 -10.62795 -10.45903 -10.18529 -9.89568 -9.73811 -9.47155 -9.04326 -8.89527 -8.64028 -8.45567 -6.93988 -5.77374 -3.07141 0.15670 0.90453 1.68020 2.15517 2.92111 3.25574 3.39541 3.42308 3.47839 3.50034 3.81047 4.31939 4.54286 4.56715 4.74938 4.84199 4.91474 4.99069 5.07525 5.12793 5.22971 5.43644 5.54658 5.57874 5.65136 5.76760 5.79938 5.83027 5.93910 5.95400 5.97199 6.03339 6.09275 6.12570 6.17144 6.21546 6.32167 6.35531 6.50445 6.50812 6.54651 6.70165 6.77717 6.79669 7.01561 7.38332 7.68738 7.90398 8.40214 8.60669 9.52108 10.08827 10.44044 11.44767 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.003609 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.501249 B = 7757.541426 C = 9509.985282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.151 3.849 6 H 0.088 0.912 7 C 0.142 3.858 8 N -0.732 5.732 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.905 3.095 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.704 5.704 18 C 0.553 3.447 19 O -0.509 6.509 20 C -0.068 4.068 21 C -0.076 4.076 22 C -0.095 4.095 23 C -0.070 4.070 24 C 0.007 3.993 25 O -0.227 6.227 26 C 0.410 3.590 27 O -0.406 6.406 28 N -0.430 5.430 29 C 0.080 3.920 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.401 0.599 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.140 0.860 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 -4.644 -11.967 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.046 3.954 6 H 0.106 0.894 7 C 0.014 3.986 8 N -0.377 5.377 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.355 5.355 18 C 0.338 3.662 19 O -0.385 6.385 20 C -0.072 4.072 21 C -0.096 4.096 22 C -0.114 4.114 23 C -0.089 4.089 24 C -0.043 4.043 25 O -0.122 6.122 26 C 0.160 3.840 27 O -0.214 6.214 28 N -0.172 5.172 29 C -0.034 4.034 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.236 0.764 44 H 0.164 0.836 45 H 0.167 0.833 46 H 0.158 0.842 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -16.072 -3.429 -11.003 19.777 hybrid contribution 0.540 -1.326 0.037 1.432 sum -15.532 -4.755 -10.966 19.599 Atomic orbital electron populations 1.21880 0.93997 1.01788 1.00942 1.20904 0.96112 0.95526 0.95243 1.21882 1.01513 0.94922 1.01492 1.21909 1.01459 0.99989 0.96463 1.21281 0.94967 0.81335 0.97821 0.89427 1.21099 0.89250 0.96030 0.92231 1.42386 1.04877 1.60281 1.30109 1.19245 0.83320 1.26007 1.08653 0.91141 1.24738 0.97487 1.00604 0.97931 1.69684 1.32434 1.38010 1.17637 0.86149 0.85282 0.77300 0.77618 1.20580 1.21920 1.21918 1.45828 1.16675 1.10444 1.62567 1.17761 0.82082 0.87465 0.78857 1.90846 1.56026 1.46844 1.44762 1.19364 0.91521 0.95071 1.01274 1.21430 0.99341 0.91938 0.96890 1.20988 0.94279 0.96998 0.99093 1.20013 0.92598 0.97495 0.98757 1.19930 0.84781 0.97153 1.02436 1.84478 1.30964 1.32423 1.64309 1.22740 0.90125 0.77622 0.93493 1.84904 1.20424 1.83246 1.32780 1.71215 1.00255 1.30105 1.15598 1.19243 0.94686 0.89082 1.00411 0.91915 0.94127 0.92974 0.91914 0.92951 0.92544 0.92925 0.93250 0.91899 0.95365 0.94679 0.78011 0.93562 0.76359 0.83582 0.83260 0.84193 0.72105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.00 37.16 0.26 -1.61 16 2 C -0.08 -1.06 0.62 -154.51 -0.10 -1.16 16 3 C -0.14 -1.81 8.12 37.15 0.30 -1.50 16 4 C -0.14 -1.73 7.97 37.16 0.30 -1.43 16 5 C 0.15 2.53 1.69 -67.93 -0.11 2.42 16 6 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 7 C 0.14 2.69 5.10 -4.05 -0.02 2.67 16 8 N -0.73 -17.78 5.43 -59.91 -0.33 -18.11 16 9 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 10 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 13 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 N -0.70 -11.30 3.59 -54.91 -0.20 -11.50 16 18 C 0.55 9.65 6.11 -12.56 -0.08 9.58 16 19 O -0.51 -10.37 13.18 5.26 0.07 -10.30 16 20 C -0.07 -1.05 5.90 -104.73 -0.62 -1.67 16 21 C -0.08 -0.90 9.53 -39.18 -0.37 -1.28 16 22 C -0.10 -0.90 10.01 -39.60 -0.40 -1.30 16 23 C -0.07 -0.70 10.04 -39.48 -0.40 -1.09 16 24 C 0.01 0.09 7.41 -38.73 -0.29 -0.20 16 25 O -0.23 -2.94 10.79 -20.53 -0.22 -3.16 16 26 C 0.41 5.42 9.54 52.34 0.50 5.92 16 27 O -0.41 -3.83 13.62 -40.29 -0.55 -4.38 16 28 N -0.43 -7.17 10.65 -12.57 -0.13 -7.30 16 29 C 0.08 1.28 6.83 -84.44 -0.58 0.70 16 30 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.82 5.78 -51.93 -0.30 0.52 16 33 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.63 7.60 -51.93 -0.39 0.23 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 39 H 0.03 0.52 6.18 -51.92 -0.32 0.20 16 40 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 41 H 0.39 10.15 7.34 -40.81 -0.30 9.85 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.40 5.92 6.63 -40.82 -0.27 5.65 16 44 H 0.15 1.52 6.40 -52.49 -0.34 1.18 16 45 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.42 1.24 9.06 45.56 0.41 1.65 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -35.93 381.03 -7.15 -43.08 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.39 Total: 13.00 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.84 Total: 2.96 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.07 Total: -63.93 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.70 Total: -17.84 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.93 -7.15 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284610311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.807 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds