Wall clock time and date at job start Wed Apr 1 2020 04:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46907 * 2 1 4 4 C 1.53002 * 109.46969 * 240.00010 * 2 1 3 5 5 C 1.53002 * 109.47064 * 120.00300 * 2 1 3 6 6 H 1.09000 * 109.46876 * 299.99995 * 5 2 1 7 7 C 1.52995 * 109.46827 * 180.02562 * 5 2 1 8 8 N 1.46497 * 109.47213 * 185.00179 * 7 5 2 9 9 C 1.36937 * 120.00601 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99700 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00606 * 179.97438 * 9 8 7 12 12 N 1.31623 * 119.99643 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00143 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47340 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46955 * 120.00376 * 13 11 9 16 16 H 1.48505 * 109.47217 * 239.99920 * 13 11 9 17 17 N 1.46502 * 109.46983 * 59.99745 * 5 2 1 18 18 C 1.34773 * 120.00111 * 274.99764 * 17 5 2 19 19 O 1.21617 * 120.00265 * 0.02562 * 18 17 5 20 20 C 1.47332 * 119.99725 * 180.02562 * 18 17 5 21 21 C 1.39495 * 120.30636 * 359.97438 * 20 18 17 22 22 C 1.38052 * 120.21565 * 180.02562 * 21 20 18 23 23 C 1.38367 * 120.67541 * 359.77848 * 22 21 20 24 24 C 1.38389 * 120.25158 * 0.44548 * 23 22 21 25 25 O 1.35317 * 133.76442 * 179.87819 * 24 23 22 26 26 C 1.34324 * 108.11277 * 179.71121 * 25 24 23 27 27 O 1.35097 * 124.95845 * 180.02562 * 26 25 24 28 28 N 1.30850 * 110.07963 * 359.97438 * 26 25 24 29 29 C 1.35539 * 108.78117 * 0.02562 * 28 26 25 30 30 H 1.09005 * 109.46945 * 299.99623 * 1 2 3 31 31 H 1.08996 * 109.47045 * 59.99522 * 1 2 3 32 32 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47267 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47658 * 300.00103 * 3 2 1 35 35 H 1.09005 * 109.47010 * 60.00417 * 3 2 1 36 36 H 1.08992 * 109.47010 * 300.00427 * 4 2 1 37 37 H 1.09006 * 109.46529 * 59.99925 * 4 2 1 38 38 H 1.08991 * 109.46945 * 179.97438 * 4 2 1 39 39 H 1.09008 * 109.47246 * 304.99920 * 7 5 2 40 40 H 1.08995 * 109.47789 * 65.00022 * 7 5 2 41 41 H 0.97012 * 120.00003 * 359.97438 * 8 7 5 42 42 H 0.96998 * 120.00024 * 180.02562 * 12 11 9 43 43 H 0.97001 * 119.99755 * 94.99889 * 17 5 2 44 44 H 1.07994 * 119.89613 * 0.04073 * 21 20 18 45 45 H 1.08001 * 119.66154 * 180.02562 * 22 21 20 46 46 H 1.08000 * 119.87489 * 180.02562 * 23 22 21 47 47 H 0.96705 * 114.00085 * 269.97214 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7207 1.2495 8 7 4.0585 -1.5130 2.3808 9 6 5.4048 -1.6566 2.5858 10 1 6.1066 -1.1860 1.9131 11 6 5.8676 -2.4069 3.6580 12 7 5.0123 -2.9808 4.4775 13 14 7.7041 -2.6032 3.9371 14 1 8.4466 -1.8659 2.8834 15 1 8.0635 -2.0562 5.2700 16 1 8.0623 -4.0433 3.8801 17 7 1.5517 -2.1025 1.2491 18 6 0.3297 -2.3853 1.7424 19 8 -0.3677 -1.4937 2.1872 20 6 -0.1611 -3.7744 1.7428 21 6 0.6333 -4.8018 1.2337 22 6 0.1712 -6.1027 1.2346 23 6 -1.0794 -6.4074 1.7421 24 6 -1.8891 -5.4059 2.2488 25 8 -3.1266 -5.3898 2.7959 26 6 -3.4219 -4.1210 3.1234 27 8 -4.5776 -3.7181 3.6953 28 7 -2.4263 -3.3324 2.8086 29 6 -1.4372 -4.0772 2.2572 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 3.9337 -1.1548 0.3180 40 1 3.9330 0.3030 1.3393 41 1 3.4281 -1.9360 2.9848 42 1 5.3357 -3.5047 5.2270 43 1 2.1078 -2.8136 0.8941 44 1 1.6130 -4.5790 0.8379 45 1 0.7939 -6.8913 0.8386 46 1 -1.4278 -7.4296 1.7367 47 1 -5.2667 -3.4759 3.0615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284610311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:03 Heat of formation + Delta-G solvation = -44.973059 kcal Electronic energy + Delta-G solvation = -31434.810229 eV Core-core repulsion = 27198.180177 eV Total energy + Delta-G solvation = -4236.630053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.40918 -41.41865 -39.52895 -38.79012 -38.07285 -36.17009 -35.81173 -34.64775 -33.05703 -31.88652 -30.46172 -29.27927 -28.12529 -27.83457 -25.86894 -25.15568 -24.16185 -23.93395 -22.93260 -21.52446 -20.49790 -19.86631 -19.38459 -19.13574 -18.49996 -18.23903 -17.48209 -17.00094 -16.79287 -16.34495 -16.17350 -15.57390 -15.48267 -15.29768 -15.21427 -14.98758 -14.82176 -14.61895 -14.19817 -13.84686 -13.63056 -13.43306 -13.16145 -13.02564 -12.99212 -12.92156 -12.83102 -12.75237 -12.50029 -12.47661 -12.34286 -12.11968 -11.98720 -11.72848 -11.68785 -11.60421 -11.27817 -10.94639 -10.75494 -10.03839 -9.84970 -9.52738 -8.96086 -7.90481 -5.20081 -0.79988 -0.02936 0.77655 1.17182 1.49948 1.51577 1.60958 1.81574 2.16149 2.35233 2.58755 2.70246 3.32924 3.44190 3.65663 3.68636 3.76839 3.86906 3.97097 4.03971 4.08609 4.25920 4.29341 4.36622 4.46092 4.60011 4.65270 4.73054 4.82839 4.85790 4.90689 4.93772 4.98153 5.07887 5.09824 5.11433 5.16458 5.19457 5.26425 5.33024 5.45794 5.50784 5.54232 5.57858 5.67771 6.16957 6.29604 6.39156 6.62018 7.31346 7.36956 8.10664 8.34565 9.32675 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.003609 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.501249 B = 7757.541426 C = 9509.985282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.136 4.136 5 C 0.159 3.841 6 H 0.050 0.950 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.239 4.239 10 H 0.080 0.920 11 C -0.072 4.072 12 N -0.969 5.969 13 Si 0.971 3.029 14 H -0.264 1.264 15 H -0.301 1.301 16 H -0.292 1.292 17 N -0.696 5.696 18 C 0.549 3.451 19 O -0.551 6.551 20 C -0.108 4.108 21 C -0.068 4.068 22 C -0.085 4.085 23 C -0.051 4.051 24 C -0.007 4.007 25 O -0.224 6.224 26 C 0.422 3.578 27 O -0.404 6.404 28 N -0.485 5.485 29 C 0.050 3.950 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.159 0.841 45 H 0.195 0.805 46 H 0.181 0.819 47 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.251 -6.331 -14.367 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.193 4.193 5 C 0.054 3.946 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.370 4.370 10 H 0.098 0.902 11 C -0.265 4.265 12 N -0.620 5.620 13 Si 0.800 3.200 14 H -0.188 1.188 15 H -0.229 1.229 16 H -0.219 1.219 17 N -0.348 5.348 18 C 0.337 3.663 19 O -0.430 6.430 20 C -0.112 4.112 21 C -0.088 4.088 22 C -0.103 4.103 23 C -0.070 4.070 24 C -0.057 4.057 25 O -0.118 6.118 26 C 0.173 3.827 27 O -0.216 6.216 28 N -0.228 5.228 29 C -0.064 4.064 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.204 0.796 42 H 0.057 0.943 43 H 0.244 0.756 44 H 0.176 0.824 45 H 0.212 0.788 46 H 0.198 0.802 47 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -15.377 -5.096 -13.476 21.072 hybrid contribution 0.217 -0.791 0.767 1.123 sum -15.160 -5.887 -12.709 20.640 Atomic orbital electron populations 1.21744 0.94438 1.00739 1.00593 1.20858 0.95556 0.96146 0.94587 1.21878 1.01528 0.94136 1.02094 1.21868 1.01440 1.00080 0.95917 1.21097 0.93529 0.81945 0.98001 0.93221 1.21228 0.90468 0.95273 0.91114 1.42570 1.03998 1.60764 1.31260 1.19661 0.84593 1.24632 1.08157 0.90174 1.25514 1.01524 1.01231 0.98200 1.69853 1.34275 1.39476 1.18356 0.85112 0.80589 0.77076 0.77179 1.18798 1.22920 1.21913 1.45725 1.16471 1.10277 1.62329 1.18190 0.81855 0.88358 0.77889 1.90809 1.57141 1.48330 1.46706 1.19348 0.92637 0.94542 1.04683 1.21715 0.99211 0.92408 0.95461 1.21510 0.94340 0.96728 0.97719 1.20608 0.91852 0.98497 0.96033 1.20374 0.85058 0.96938 1.03340 1.84478 1.30973 1.32038 1.64314 1.22791 0.90470 0.77590 0.91871 1.84870 1.20032 1.83023 1.33709 1.71133 1.01758 1.31992 1.17930 1.19516 0.94992 0.90524 1.01326 0.94616 0.91905 0.94438 0.91777 0.90611 0.93752 0.92747 0.91215 0.91727 0.93226 0.94527 0.79598 0.94259 0.75576 0.82397 0.78819 0.80205 0.68894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 7.00 71.98 0.50 -2.99 16 2 C -0.07 -1.92 0.62 -52.18 -0.03 -1.95 16 3 C -0.14 -3.44 8.12 71.98 0.58 -2.86 16 4 C -0.14 -3.04 7.97 71.98 0.57 -2.47 16 5 C 0.16 5.53 1.69 44.99 0.08 5.60 16 6 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 7 C 0.15 5.49 5.10 86.38 0.44 5.93 16 8 N -0.74 -36.47 5.43 -343.46 -1.87 -38.34 16 9 C -0.24 -12.81 9.99 84.03 0.84 -11.97 16 10 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 11 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 12 N -0.97 -58.89 13.06 21.65 0.28 -58.60 16 13 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 17 N -0.70 -23.16 3.59 -445.89 -1.60 -24.77 16 18 C 0.55 20.40 6.11 86.64 0.53 20.93 16 19 O -0.55 -24.38 13.18 -4.08 -0.05 -24.43 16 20 C -0.11 -3.44 5.90 -19.94 -0.12 -3.56 16 21 C -0.07 -1.55 9.53 22.53 0.21 -1.33 16 22 C -0.09 -1.33 10.01 22.26 0.22 -1.11 16 23 C -0.05 -0.87 10.04 22.34 0.22 -0.65 16 24 C -0.01 -0.19 7.41 22.82 0.17 -0.02 16 25 O -0.22 -5.68 10.79 9.27 0.10 -5.58 16 26 C 0.42 11.43 9.54 130.39 1.24 12.67 16 27 O -0.40 -7.57 13.62 -61.45 -0.84 -8.41 16 28 N -0.49 -17.13 10.65 -421.87 -4.49 -21.62 16 29 C 0.05 1.67 6.83 39.73 0.27 1.94 16 30 H 0.03 1.23 7.53 -2.38 -0.02 1.21 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.21 5.78 -2.39 -0.01 1.20 16 33 H 0.06 1.57 6.55 -2.39 -0.02 1.55 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 1.43 6.32 -2.39 -0.02 1.42 16 39 H 0.05 1.71 6.18 -2.38 -0.01 1.69 16 40 H 0.04 1.40 6.71 -2.39 -0.02 1.38 16 41 H 0.37 20.21 7.34 -92.70 -0.68 19.53 16 42 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.41 12.13 6.63 -92.71 -0.62 11.52 16 44 H 0.16 3.07 6.40 -2.91 -0.02 3.05 16 45 H 0.19 1.33 8.06 -2.91 -0.02 1.30 16 46 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 47 H 0.45 2.36 9.06 -74.05 -0.67 1.68 16 Total: -1.00 -82.04 381.03 -1.14 -83.18 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.91 Total: 36.78 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.21 Total: 14.57 kcal Atomic # 7 Polarization: -135.65 SS G_CDS: -7.68 Total: -143.33 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.79 Total: -38.42 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -82.04 -1.14 -83.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284610311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.203 kcal (2) G-P(sol) polarization free energy of solvation -82.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds