Wall clock time and date at job start Wed Apr 1 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.53006 * 109.47119 * 119.99785 * 2 1 3 5 5 H 1.09004 * 109.46901 * 60.00233 * 4 2 1 6 6 C 1.52993 * 109.47133 * 300.00294 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21578 * 119.99677 * 359.97438 * 8 7 6 10 10 C 1.47615 * 119.99973 * 180.02562 * 8 7 6 11 11 C 1.39718 * 120.05540 * 359.97438 * 10 8 7 12 12 C 1.37842 * 120.10980 * 179.97438 * 11 10 8 13 13 C 1.38693 * 120.07756 * 0.02562 * 12 11 10 14 14 C 1.39683 * 120.09806 * 0.02562 * 13 12 11 15 15 C 1.38096 * 120.11819 * 359.67251 * 14 13 12 16 16 N 1.40270 * 119.24882 * 179.91142 * 14 13 12 17 17 C 1.35086 * 118.96341 * 15.53508 * 16 14 13 18 18 O 1.21298 * 120.13707 * 181.67256 * 17 16 14 19 19 C 1.50752 * 119.71761 * 1.64980 * 17 16 14 20 20 O 1.35852 * 120.51811 * 180.02562 * 13 12 11 21 21 N 1.46493 * 109.46887 * 179.97438 * 4 2 1 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 4 2 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 4 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09000 * 109.47191 * 60.00328 * 1 2 3 31 31 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47066 * 300.00001 * 1 2 3 33 33 H 1.08997 * 109.47066 * 239.99999 * 2 1 3 34 34 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46935 * 299.99829 * 3 2 1 36 36 H 1.08997 * 109.47266 * 60.00122 * 3 2 1 37 37 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 38 38 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 39 39 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 40 40 H 1.07998 * 119.94532 * 359.96622 * 11 10 8 41 41 H 1.08008 * 119.96197 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.14548 * 180.33494 * 15 14 13 43 43 H 0.97001 * 120.51383 * 195.50652 * 16 14 13 44 44 H 1.09007 * 109.43756 * 208.54825 * 19 17 16 45 45 H 1.09005 * 109.41074 * 88.64353 * 19 17 16 46 46 H 0.97000 * 120.00040 * 94.99981 * 21 4 2 47 47 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 2.1141 -0.6175 3.6916 8 6 1.8052 -0.1443 4.9152 9 8 1.0421 0.7953 5.0288 10 6 2.3943 -0.7662 6.1174 11 6 3.2718 -1.8458 5.9882 12 6 3.8229 -2.4270 7.1100 13 6 3.5073 -1.9420 8.3705 14 6 2.6299 -0.8637 8.5066 15 6 2.0791 -0.2728 7.3866 16 7 2.3216 -0.3888 9.7900 17 6 3.1018 -0.7581 10.8290 18 8 2.8371 -0.3845 11.9523 19 6 4.3025 -1.6369 10.5867 20 8 4.0457 -2.5077 9.4821 21 7 3.5050 -0.7217 1.2490 22 6 4.1892 -1.6935 0.5688 23 1 3.6489 -2.4594 0.0323 24 6 5.5773 -1.6942 0.5690 25 7 6.2350 -2.6315 -0.0803 26 14 6.5120 -0.3700 1.4975 27 1 6.7661 0.7817 0.5951 28 1 5.7067 0.0809 2.6609 29 1 7.8062 -0.9198 1.9748 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8184 1.0503 2.4548 38 1 0.4437 -0.0768 2.5444 39 1 2.7227 -1.3674 3.6011 40 1 3.5186 -2.2255 5.0078 41 1 4.5007 -3.2617 7.0074 42 1 1.4048 0.5643 7.4911 43 1 1.5603 0.1961 9.9290 44 1 4.5030 -2.2312 11.4782 45 1 5.1686 -1.0135 10.3639 46 1 3.9903 -0.0337 1.7305 47 1 7.2050 -2.6343 -0.0769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319915466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:48 Heat of formation + Delta-G solvation = -66.792368 kcal Electronic energy + Delta-G solvation = -30418.793041 eV Core-core repulsion = 26181.216832 eV Total energy + Delta-G solvation = -4237.576209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84756 -40.01127 -38.99720 -37.86938 -37.24086 -35.54124 -34.00639 -33.34248 -31.26569 -30.88014 -30.26350 -28.60273 -27.45836 -26.76501 -24.76821 -23.81339 -23.06216 -22.32489 -21.46906 -19.80104 -19.41725 -18.81225 -18.34314 -17.92918 -17.43492 -16.70252 -16.55039 -16.13119 -15.50285 -15.38776 -15.08920 -14.70536 -14.67191 -14.53701 -14.25014 -13.91371 -13.68670 -13.54606 -13.46832 -13.07319 -13.05273 -12.95302 -12.73128 -12.49745 -11.79100 -11.63363 -11.59363 -11.36632 -11.18882 -11.15224 -11.05014 -10.73240 -10.55825 -10.54977 -10.21788 -9.99392 -9.83164 -9.69275 -9.11274 -9.03485 -8.84047 -8.37221 -7.41109 -5.88581 -3.25718 0.40756 0.78806 1.79215 2.28375 2.67850 2.86317 3.26315 3.26937 3.31502 3.38026 3.51578 3.60635 4.20599 4.44813 4.47439 4.59468 4.66017 4.79994 4.86150 4.97421 5.09505 5.18947 5.32059 5.37030 5.50663 5.53609 5.60635 5.65297 5.73013 5.76382 5.95446 5.96608 5.97496 6.04591 6.14769 6.18229 6.23155 6.30124 6.35090 6.44302 6.56130 6.67604 6.81679 6.83068 6.91374 7.31581 7.66867 7.86824 8.28319 8.30182 9.07430 9.79546 9.98563 11.29220 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.002905 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.640527 B = 9636.962656 C =11258.381968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.175 3.825 5 H 0.063 0.937 6 C 0.107 3.893 7 N -0.708 5.708 8 C 0.556 3.444 9 O -0.548 6.548 10 C -0.121 4.121 11 C -0.069 4.069 12 C -0.111 4.111 13 C 0.100 3.900 14 C 0.078 3.922 15 C -0.063 4.063 16 N -0.657 5.657 17 C 0.491 3.509 18 O -0.513 6.513 19 C 0.050 3.950 20 O -0.298 6.298 21 N -0.745 5.745 22 C -0.247 4.247 23 H 0.092 0.908 24 C 0.010 3.990 25 N -0.930 5.930 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.277 1.277 29 H -0.291 1.291 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.418 0.582 44 H 0.148 0.852 45 H 0.103 0.897 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 2.317 15.327 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.200 4.200 4 C 0.065 3.935 5 H 0.081 0.919 6 C -0.017 4.017 7 N -0.360 5.360 8 C 0.342 3.658 9 O -0.427 6.427 10 C -0.125 4.125 11 C -0.088 4.088 12 C -0.129 4.129 13 C 0.053 3.947 14 C -0.017 4.017 15 C -0.084 4.084 16 N -0.305 5.305 17 C 0.278 3.722 18 O -0.388 6.388 19 C -0.028 4.028 20 O -0.212 6.212 21 N -0.388 5.388 22 C -0.376 4.376 23 H 0.110 0.890 24 C -0.186 4.186 25 N -0.577 5.577 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.203 1.203 29 H -0.217 1.217 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.247 0.753 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.258 0.742 44 H 0.165 0.835 45 H 0.120 0.880 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.679 2.661 15.944 17.896 hybrid contribution 0.782 1.103 0.515 1.447 sum -6.897 3.764 16.459 18.239 Atomic orbital electron populations 1.21920 0.96425 1.01231 1.01112 1.21691 0.93892 0.96892 1.00784 1.21790 1.02079 0.95935 1.00176 1.20497 0.85058 0.97440 0.90526 0.91863 1.21929 0.97870 0.97915 0.84018 1.45963 1.48351 1.36407 1.05268 1.18026 0.81323 0.83185 0.83245 1.90755 1.36626 1.28474 1.86861 1.19809 1.00925 0.98439 0.93356 1.21363 0.94136 0.93930 0.99391 1.20519 1.01764 1.02430 0.88231 1.18847 0.94931 0.93304 0.87661 1.17857 1.01075 0.97474 0.85282 1.20648 0.99432 0.99206 0.89148 1.43717 1.31295 1.49945 1.05529 1.21548 0.85261 0.80929 0.84423 1.90825 1.71136 1.55114 1.21739 1.23241 0.95168 0.93706 0.90712 1.86234 1.79049 1.34723 1.21238 1.42830 1.00325 1.33388 1.62262 1.19034 0.89358 1.04544 1.24694 0.89041 1.24647 0.96169 0.97856 0.99942 1.69692 1.07145 1.34609 1.46216 0.86667 0.79980 0.82395 0.80117 1.21114 1.20270 1.21735 0.93345 0.92972 0.92940 0.90331 0.91949 0.93827 0.93464 0.91191 0.90935 0.75294 0.83591 0.83259 0.83553 0.74248 0.83474 0.87952 0.80465 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.84 37.16 0.33 -1.54 16 2 C -0.11 -1.70 2.91 -90.62 -0.26 -1.96 16 3 C -0.14 -2.14 8.69 37.16 0.32 -1.82 16 4 C 0.17 2.86 2.27 -67.93 -0.15 2.71 16 5 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 6 C 0.11 1.58 4.51 -4.05 -0.02 1.56 16 7 N -0.71 -10.24 5.34 -61.33 -0.33 -10.57 16 8 C 0.56 8.16 7.76 -12.43 -0.10 8.06 16 9 O -0.55 -9.44 16.34 5.30 0.09 -9.36 16 10 C -0.12 -1.48 5.88 -104.95 -0.62 -2.10 16 11 C -0.07 -0.74 9.53 -39.17 -0.37 -1.11 16 12 C -0.11 -1.08 9.98 -39.56 -0.39 -1.48 16 13 C 0.10 1.01 6.45 -38.87 -0.25 0.76 16 14 C 0.08 0.79 6.54 -83.51 -0.55 0.24 16 15 C -0.06 -0.69 9.49 -39.06 -0.37 -1.06 16 16 N -0.66 -6.02 5.47 -9.68 -0.05 -6.07 16 17 C 0.49 4.81 7.94 -10.82 -0.09 4.73 16 18 O -0.51 -6.50 17.95 5.54 0.10 -6.40 16 19 C 0.05 0.36 7.16 36.03 0.26 0.62 16 20 O -0.30 -2.78 10.44 -19.28 -0.20 -2.98 16 21 N -0.75 -15.01 3.60 -53.43 -0.19 -15.20 16 22 C -0.25 -6.12 10.41 -15.06 -0.16 -6.28 16 23 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 25 N -0.93 -27.16 13.97 55.49 0.78 -26.38 16 26 Si 0.88 20.41 27.74 -169.99 -4.72 15.69 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -5.97 6.51 56.52 0.37 -5.60 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.07 7.61 -51.93 -0.39 0.68 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 37 H 0.07 1.09 6.17 -51.92 -0.32 0.77 16 38 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 39 H 0.41 5.78 6.15 -40.82 -0.25 5.53 16 40 H 0.15 1.50 6.38 -52.49 -0.34 1.16 16 41 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.15 1.52 7.65 -52.49 -0.40 1.12 16 43 H 0.42 3.21 8.89 -40.82 -0.36 2.84 16 44 H 0.15 0.73 8.14 -51.92 -0.42 0.31 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.36 7.44 5.66 -40.82 -0.23 7.21 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -32.00 384.88 -7.53 -39.53 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.28 Total: 14.45 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.51 Total: 1.50 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.20 Total: -58.22 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.02 Total: -18.74 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.72 Total: 15.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.00 -7.53 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319915466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.267 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds