Wall clock time and date at job start Wed Apr 1 2020 04:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.53006 * 109.47119 * 119.99785 * 2 1 3 5 5 H 1.09004 * 109.46901 * 60.00233 * 4 2 1 6 6 C 1.52993 * 109.47133 * 300.00294 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21578 * 119.99677 * 359.97438 * 8 7 6 10 10 C 1.47615 * 119.99973 * 180.02562 * 8 7 6 11 11 C 1.39718 * 120.05540 * 359.97438 * 10 8 7 12 12 C 1.37842 * 120.10980 * 179.97438 * 11 10 8 13 13 C 1.38693 * 120.07756 * 0.02562 * 12 11 10 14 14 C 1.39683 * 120.09806 * 0.02562 * 13 12 11 15 15 C 1.38096 * 120.11819 * 359.67251 * 14 13 12 16 16 N 1.40270 * 119.24882 * 179.91142 * 14 13 12 17 17 C 1.35086 * 118.96341 * 15.53508 * 16 14 13 18 18 O 1.21298 * 120.13707 * 181.67256 * 17 16 14 19 19 C 1.50752 * 119.71761 * 1.64980 * 17 16 14 20 20 O 1.35852 * 120.51811 * 180.02562 * 13 12 11 21 21 N 1.46493 * 109.46887 * 179.97438 * 4 2 1 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 4 2 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 4 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09000 * 109.47191 * 60.00328 * 1 2 3 31 31 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47066 * 300.00001 * 1 2 3 33 33 H 1.08997 * 109.47066 * 239.99999 * 2 1 3 34 34 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46935 * 299.99829 * 3 2 1 36 36 H 1.08997 * 109.47266 * 60.00122 * 3 2 1 37 37 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 38 38 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 39 39 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 40 40 H 1.07998 * 119.94532 * 359.96622 * 11 10 8 41 41 H 1.08008 * 119.96197 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.14548 * 180.33494 * 15 14 13 43 43 H 0.97001 * 120.51383 * 195.50652 * 16 14 13 44 44 H 1.09007 * 109.43756 * 208.54825 * 19 17 16 45 45 H 1.09005 * 109.41074 * 88.64353 * 19 17 16 46 46 H 0.97000 * 120.00040 * 94.99981 * 21 4 2 47 47 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 2.1141 -0.6175 3.6916 8 6 1.8052 -0.1443 4.9152 9 8 1.0421 0.7953 5.0288 10 6 2.3943 -0.7662 6.1174 11 6 3.2718 -1.8458 5.9882 12 6 3.8229 -2.4270 7.1100 13 6 3.5073 -1.9420 8.3705 14 6 2.6299 -0.8637 8.5066 15 6 2.0791 -0.2728 7.3866 16 7 2.3216 -0.3888 9.7900 17 6 3.1018 -0.7581 10.8290 18 8 2.8371 -0.3845 11.9523 19 6 4.3025 -1.6369 10.5867 20 8 4.0457 -2.5077 9.4821 21 7 3.5050 -0.7217 1.2490 22 6 4.1892 -1.6935 0.5688 23 1 3.6489 -2.4594 0.0323 24 6 5.5773 -1.6942 0.5690 25 7 6.2350 -2.6315 -0.0803 26 14 6.5120 -0.3700 1.4975 27 1 6.7661 0.7817 0.5951 28 1 5.7067 0.0809 2.6609 29 1 7.8062 -0.9198 1.9748 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8184 1.0503 2.4548 38 1 0.4437 -0.0768 2.5444 39 1 2.7227 -1.3674 3.6011 40 1 3.5186 -2.2255 5.0078 41 1 4.5007 -3.2617 7.0074 42 1 1.4048 0.5643 7.4911 43 1 1.5603 0.1961 9.9290 44 1 4.5030 -2.2312 11.4782 45 1 5.1686 -1.0135 10.3639 46 1 3.9903 -0.0337 1.7305 47 1 7.2050 -2.6343 -0.0769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319915466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:47 Heat of formation + Delta-G solvation = -89.689303 kcal Electronic energy + Delta-G solvation = -30419.785926 eV Core-core repulsion = 26181.216832 eV Total energy + Delta-G solvation = -4238.569095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.60935 -41.08109 -39.88171 -39.02113 -38.24595 -36.36011 -35.24923 -35.04961 -32.72953 -32.03812 -31.10789 -29.51677 -28.56658 -27.91449 -25.92877 -25.02147 -24.06951 -23.72874 -22.44804 -20.79147 -20.24188 -20.02523 -19.70959 -19.15205 -18.24473 -17.75540 -17.46929 -17.14041 -16.86396 -16.24010 -16.10841 -16.06542 -15.67030 -15.51711 -15.34416 -15.03443 -14.91577 -14.73623 -14.49012 -14.36164 -14.13003 -14.06110 -13.96697 -13.78430 -12.97374 -12.81952 -12.67051 -12.60884 -12.47490 -12.37123 -12.16378 -12.09725 -11.98780 -11.74805 -11.59476 -11.36494 -11.22897 -11.08922 -10.86330 -10.10335 -9.84971 -9.25773 -9.17667 -7.94854 -5.27812 -0.44969 -0.01697 1.03203 1.41306 1.44637 1.51045 1.55903 1.75135 2.07632 2.23557 2.52963 2.66370 2.82228 3.37229 3.43472 3.56895 3.66615 3.86808 3.94735 4.00152 4.04069 4.06218 4.22623 4.29829 4.32163 4.45591 4.50794 4.60950 4.70692 4.78506 4.90329 4.91530 4.94597 5.11836 5.13042 5.15139 5.22371 5.27374 5.33339 5.37018 5.45968 5.58883 5.61490 5.66379 5.87696 6.07652 6.28065 6.52198 6.58617 7.13734 7.15301 7.88795 8.07904 9.26405 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.002905 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.640527 B = 9636.962656 C =11258.381968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.175 3.825 5 H 0.060 0.940 6 C 0.116 3.884 7 N -0.709 5.709 8 C 0.557 3.443 9 O -0.577 6.577 10 C -0.138 4.138 11 C -0.067 4.067 12 C -0.109 4.109 13 C 0.102 3.898 14 C 0.079 3.921 15 C -0.062 4.062 16 N -0.654 5.654 17 C 0.490 3.510 18 O -0.546 6.546 19 C 0.049 3.951 20 O -0.301 6.301 21 N -0.742 5.742 22 C -0.215 4.215 23 H 0.063 0.937 24 C -0.054 4.054 25 N -0.982 5.982 26 Si 0.940 3.060 27 H -0.292 1.292 28 H -0.249 1.249 29 H -0.300 1.300 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.411 0.589 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.423 0.577 44 H 0.173 0.827 45 H 0.126 0.874 46 H 0.364 0.636 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 3.054 16.974 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.066 3.934 5 H 0.078 0.922 6 C -0.008 4.008 7 N -0.360 5.360 8 C 0.345 3.655 9 O -0.459 6.459 10 C -0.142 4.142 11 C -0.086 4.086 12 C -0.128 4.128 13 C 0.055 3.945 14 C -0.016 4.016 15 C -0.083 4.083 16 N -0.302 5.302 17 C 0.278 3.722 18 O -0.424 6.424 19 C -0.028 4.028 20 O -0.215 6.215 21 N -0.385 5.385 22 C -0.346 4.346 23 H 0.080 0.920 24 C -0.246 4.246 25 N -0.633 5.633 26 Si 0.769 3.231 27 H -0.219 1.219 28 H -0.173 1.173 29 H -0.227 1.227 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.249 0.751 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.165 0.835 43 H 0.263 0.737 44 H 0.190 0.810 45 H 0.143 0.857 46 H 0.197 0.803 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.295 3.417 17.602 19.756 hybrid contribution 0.849 0.829 0.006 1.186 sum -7.447 4.246 17.608 19.584 Atomic orbital electron populations 1.21847 0.93734 1.02019 1.02332 1.21585 0.96136 0.96640 0.98631 1.21759 1.00402 0.95868 1.01633 1.20640 0.82745 0.97839 0.92145 0.92216 1.21806 0.98587 0.97301 0.83147 1.45958 1.48375 1.36411 1.05278 1.18331 0.80736 0.82672 0.83723 1.90735 1.38027 1.29825 1.87264 1.19652 1.02275 0.99537 0.92692 1.21410 0.93729 0.93478 1.00014 1.20700 1.01659 1.02666 0.87727 1.18985 0.94489 0.92844 0.88189 1.17819 1.01048 0.97511 0.85240 1.20639 0.99412 0.99226 0.89039 1.43742 1.31448 1.49763 1.05236 1.22024 0.85638 0.80646 0.83843 1.90814 1.72076 1.56577 1.22896 1.23529 0.94434 0.93916 0.90896 1.86239 1.78776 1.35235 1.21280 1.42755 1.01905 1.32273 1.61613 1.18941 0.89209 1.03827 1.22591 0.91952 1.25284 0.97265 1.00199 1.01832 1.69859 1.07003 1.37283 1.49109 0.85645 0.78480 0.79361 0.79631 1.21877 1.17295 1.22694 0.92110 0.92466 0.91730 0.93076 0.94457 0.92374 0.92061 0.91504 0.89492 0.75094 0.83275 0.81385 0.83462 0.73704 0.81023 0.85680 0.80295 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.84 71.98 0.64 -2.57 16 2 C -0.11 -3.20 2.91 -10.79 -0.03 -3.23 16 3 C -0.14 -3.96 8.69 71.98 0.63 -3.34 16 4 C 0.17 5.53 2.27 44.99 0.10 5.63 16 5 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 6 C 0.12 3.20 4.51 86.38 0.39 3.59 16 7 N -0.71 -19.39 5.34 -466.20 -2.49 -21.88 16 8 C 0.56 15.61 7.76 86.72 0.67 16.28 16 9 O -0.58 -19.21 16.34 -3.96 -0.06 -19.28 16 10 C -0.14 -3.16 5.88 -20.07 -0.12 -3.28 16 11 C -0.07 -1.32 9.53 22.53 0.21 -1.10 16 12 C -0.11 -1.86 9.98 22.28 0.22 -1.64 16 13 C 0.10 1.82 6.45 22.73 0.15 1.97 16 14 C 0.08 1.45 6.54 38.11 0.25 1.70 16 15 C -0.06 -1.27 9.49 22.61 0.21 -1.05 16 16 N -0.65 -11.01 5.47 -302.74 -1.66 -12.67 16 17 C 0.49 8.73 7.94 87.62 0.70 9.43 16 18 O -0.55 -13.22 17.95 -3.08 -0.06 -13.28 16 19 C 0.05 0.57 7.16 71.25 0.51 1.08 16 20 O -0.30 -4.75 10.44 -91.89 -0.96 -5.71 16 21 N -0.74 -29.34 3.60 -322.95 -1.16 -30.51 16 22 C -0.21 -10.75 10.41 84.03 0.87 -9.87 16 23 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 24 C -0.05 -2.91 5.50 84.86 0.47 -2.45 16 25 N -0.98 -58.90 13.97 21.65 0.30 -58.60 16 26 Si 0.94 42.18 27.74 68.60 1.90 44.08 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.25 -9.84 6.51 99.48 0.65 -9.19 16 29 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.33 6.54 -2.39 -0.02 1.31 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.23 7.61 -2.39 -0.02 1.22 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.56 6.32 -2.39 -0.02 1.55 16 37 H 0.07 1.94 6.17 -2.38 -0.01 1.92 16 38 H 0.09 2.20 6.71 -2.39 -0.02 2.19 16 39 H 0.41 11.01 6.15 -92.71 -0.57 10.44 16 40 H 0.15 2.81 6.38 -2.91 -0.02 2.79 16 41 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 42 H 0.15 2.94 7.65 -2.91 -0.02 2.92 16 43 H 0.42 6.06 8.89 -92.71 -0.82 5.23 16 44 H 0.17 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.36 14.35 5.66 -92.71 -0.52 13.83 16 47 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -69.68 384.88 0.76 -68.93 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.93 Total: 37.76 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.87 Total: 11.15 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.01 Total: -123.65 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.08 Total: -38.27 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.90 Total: 44.08 kcal Total: -69.68 0.76 -68.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319915466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.764 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds