Wall clock time and date at job start Wed Apr 1 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00277 * 2 1 4 4 O 1.20827 * 120.00017 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00199 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47294 * 299.99405 * 6 5 3 8 8 N 1.46504 * 109.46987 * 179.97438 * 6 5 3 9 9 C 1.34776 * 119.99886 * 294.59577 * 8 6 5 10 10 O 1.21580 * 120.00044 * 5.33927 * 9 8 6 11 11 N 1.34783 * 119.99857 * 185.35645 * 9 8 6 12 12 C 1.39459 * 120.00026 * 174.36232 * 11 9 8 13 13 C 1.38637 * 119.64890 * 185.02419 * 12 11 9 14 14 C 1.40821 * 118.67442 * 179.97438 * 13 12 11 15 15 C 1.41545 * 120.99705 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00291 * 148.04984 * 15 14 13 17 17 C 1.40035 * 119.99658 * 328.04697 * 15 14 13 18 18 N 1.30740 * 120.00220 * 356.99090 * 17 15 14 19 19 Si 1.86802 * 119.99774 * 176.98809 * 17 15 14 20 20 H 1.48500 * 109.47301 * 89.99988 * 19 17 15 21 21 H 1.48498 * 109.46925 * 210.00190 * 19 17 15 22 22 H 1.48503 * 109.47254 * 329.99968 * 19 17 15 23 23 C 1.41160 * 118.00460 * 0.02562 * 14 13 12 24 24 C 1.36583 * 119.13045 * 359.97438 * 23 14 13 25 25 N 1.32073 * 121.25760 * 359.74382 * 24 23 14 26 26 C 1.53000 * 109.47447 * 60.00187 * 6 5 3 27 27 C 1.53002 * 117.49648 * 248.59485 * 26 6 5 28 28 C 1.52995 * 117.50108 * 179.97438 * 26 6 5 29 29 H 1.08999 * 109.47061 * 300.00289 * 1 2 3 30 30 H 1.08998 * 109.46870 * 60.00092 * 1 2 3 31 31 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46883 * 300.00006 * 5 3 2 33 33 H 1.08999 * 109.47060 * 59.99549 * 5 3 2 34 34 H 1.09009 * 109.46754 * 60.00361 * 7 6 5 35 35 H 1.08998 * 109.47544 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47473 * 300.00562 * 7 6 5 37 37 H 0.96999 * 119.99946 * 114.58100 * 8 6 5 38 38 H 0.97004 * 119.99808 * 354.34736 * 11 9 8 39 39 H 1.08000 * 120.66428 * 0.02562 * 13 12 11 40 40 H 0.97005 * 120.00241 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.43460 * 179.97438 * 23 14 13 42 42 H 1.08004 * 119.37300 * 179.97438 * 24 23 14 43 43 H 1.08994 * 115.54923 * 34.29470 * 26 6 5 44 44 H 1.08997 * 117.49842 * 359.97438 * 27 26 6 45 45 H 1.08997 * 117.50234 * 145.01999 * 27 26 6 46 46 H 1.08990 * 117.50152 * 214.97794 * 28 26 6 47 47 H 1.09001 * 117.49889 * 359.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 6 3.4538 3.4347 -1.2501 8 7 5.4632 2.8186 0.0010 9 6 6.1607 2.3696 1.0632 10 8 5.5843 1.8130 1.9777 11 7 7.4971 2.5378 1.1119 12 6 8.2035 2.1803 2.2600 13 6 9.5604 2.4524 2.3428 14 6 10.2535 2.0830 3.5117 15 6 11.6393 2.3368 3.6484 16 1 12.0563 2.5471 4.6221 17 6 12.4695 2.3150 2.5209 18 7 11.9757 2.0027 1.3513 19 14 14.2827 2.7323 2.6880 20 1 15.0517 1.4939 2.9709 21 1 14.7695 3.3394 1.4232 22 1 14.4682 3.6956 3.8029 23 6 9.5249 1.4512 4.5425 24 6 8.1891 1.2245 4.3700 25 7 7.5696 1.5893 3.2621 26 6 3.4527 3.4364 1.2484 27 6 2.3624 4.4912 1.0492 28 6 3.7802 4.9195 1.4329 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9557 0.7808 0.8908 33 1 3.9565 0.7804 -0.8891 34 1 2.3652 3.3777 -1.2506 35 1 3.7632 4.4799 -1.2510 36 1 3.8439 2.9400 -2.1396 37 1 5.9299 3.1924 -0.7628 38 1 7.9675 2.9073 0.3483 39 1 10.0755 2.9386 1.5275 40 1 12.5510 1.9872 0.5704 41 1 10.0173 1.1510 5.4557 42 1 7.6280 0.7410 5.1560 43 1 3.3974 2.8179 2.1441 44 1 2.0355 4.6906 0.0287 45 1 1.5895 4.5668 1.8141 46 1 3.9401 5.2768 2.4500 47 1 4.3861 5.4004 0.6649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434742924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:15 Heat of formation + Delta-G solvation = -35.062110 kcal Electronic energy + Delta-G solvation = -31005.187203 eV Core-core repulsion = 26768.986921 eV Total energy + Delta-G solvation = -4236.200282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04280 -39.89369 -38.65543 -37.47075 -36.30097 -34.48061 -34.05367 -33.68925 -31.42374 -30.45129 -29.02366 -28.23769 -27.20503 -25.95975 -23.97515 -22.34028 -21.99804 -21.79040 -21.22391 -20.18482 -18.93023 -18.07004 -17.64660 -17.55644 -16.80118 -16.60475 -15.96556 -15.57988 -15.26317 -14.83474 -14.78530 -14.47100 -14.18550 -14.10098 -13.64235 -13.49745 -13.20939 -12.98565 -12.71165 -12.56466 -12.49425 -12.30943 -12.21697 -12.11306 -11.64171 -11.42621 -11.17498 -11.13343 -10.98010 -10.89039 -10.87164 -10.43283 -10.28015 -10.12522 -10.02410 -9.94721 -9.69232 -9.38138 -9.34428 -8.85712 -7.88375 -7.71325 -7.00698 -6.69877 -4.61409 2.17710 2.52217 2.70913 2.82478 3.02981 3.07319 3.08479 3.24830 3.86205 3.89409 4.09310 4.47936 4.59907 4.67786 4.73868 4.83890 4.92020 4.99385 5.00105 5.22535 5.29475 5.34297 5.39567 5.43185 5.61561 5.68047 5.81138 5.84323 5.90219 5.96654 6.02451 6.15238 6.31610 6.36558 6.48248 6.54830 6.63929 6.75524 6.80484 6.98267 7.15414 7.30513 7.43412 7.50778 7.71398 7.90524 8.13508 8.41898 8.48084 8.74193 8.79409 9.20299 9.72037 10.16241 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.002416 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.779645 B =11587.146281 C =11858.948170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.496 6.496 5 C -0.127 4.127 6 C 0.245 3.755 7 C -0.172 4.172 8 N -0.745 5.745 9 C 0.695 3.305 10 O -0.527 6.527 11 N -0.668 5.668 12 C 0.354 3.646 13 C -0.236 4.236 14 C 0.144 3.856 15 C -0.459 4.459 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.803 5.803 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.278 4.278 24 C 0.116 3.884 25 N -0.546 5.546 26 C -0.143 4.143 27 C -0.154 4.154 28 C -0.177 4.177 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.393 0.607 38 H 0.404 0.596 39 H 0.131 0.869 40 H 0.279 0.721 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.622 1.665 -8.890 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.383 6.383 5 C -0.166 4.166 6 C 0.158 3.842 7 C -0.229 4.229 8 N -0.403 5.403 9 C 0.395 3.605 10 O -0.398 6.398 11 N -0.316 5.316 12 C 0.127 3.873 13 C -0.262 4.262 14 C 0.136 3.864 15 C -0.491 4.491 16 H 0.098 0.902 17 C -0.142 4.142 18 N -0.430 5.430 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.302 4.302 24 C -0.038 4.038 25 N -0.265 5.265 26 C -0.162 4.162 27 C -0.191 4.191 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.226 0.774 38 H 0.238 0.762 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.279 1.276 -8.364 19.239 hybrid contribution 2.223 0.567 -0.653 2.385 sum -15.056 1.843 -9.017 17.646 Atomic orbital electron populations 1.23217 0.76665 1.03458 1.02391 1.86535 1.23178 1.33850 1.84262 1.23624 0.92001 0.81209 0.72092 1.90609 1.67217 1.35583 1.44915 1.21913 0.87529 0.99808 1.07346 1.19071 0.78610 0.91602 0.94904 1.22474 1.04351 1.00717 0.95346 1.45382 1.05653 1.69016 1.20256 1.16064 0.81642 0.79980 0.82793 1.90958 1.67964 1.44248 1.36609 1.42582 1.05819 1.66170 1.16986 1.17980 0.87949 0.95226 0.86106 1.21631 0.90546 1.10680 1.03298 1.17591 0.92990 0.86145 0.89712 1.19532 0.91881 1.42986 0.94694 0.90180 1.25903 1.01418 0.92325 0.94603 1.69728 1.37658 1.35682 0.99955 0.86195 0.81511 0.79554 0.78739 1.19463 1.20195 1.18559 1.21752 0.95886 1.10175 1.02363 1.21486 0.91802 0.96773 0.93720 1.67212 1.38791 1.19103 1.01371 1.22415 1.03062 0.91675 0.99021 1.22938 0.91256 1.02476 1.02455 1.22862 0.99019 0.97310 1.02182 0.91917 0.92065 0.88391 0.85272 0.87918 0.88163 0.91663 0.92409 0.77362 0.76207 0.85172 0.90989 0.88018 0.86057 0.87236 0.88316 0.89736 0.89418 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.14 10.56 -39.24 -0.41 -4.56 16 3 C 0.47 5.70 7.39 36.01 0.27 5.97 16 4 O -0.50 -6.33 10.82 -18.75 -0.20 -6.53 16 5 C -0.13 -1.58 4.87 -27.88 -0.14 -1.72 16 6 C 0.25 3.00 0.62 -131.82 -0.08 2.92 16 7 C -0.17 -1.65 6.91 37.16 0.26 -1.39 16 8 N -0.75 -9.66 4.98 -52.42 -0.26 -9.93 16 9 C 0.70 12.56 7.93 -86.91 -0.69 11.87 16 10 O -0.53 -11.41 11.47 5.29 0.06 -11.35 16 11 N -0.67 -12.71 5.40 -15.86 -0.09 -12.80 16 12 C 0.35 8.42 7.42 -154.68 -1.15 7.27 16 13 C -0.24 -5.91 8.58 -38.46 -0.33 -6.24 16 14 C 0.14 3.77 5.57 -106.55 -0.59 3.17 16 15 C -0.46 -11.78 9.12 -37.65 -0.34 -12.12 16 16 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 17 C 0.07 1.80 5.38 -17.34 -0.09 1.70 16 18 N -0.80 -19.77 10.76 55.55 0.60 -19.17 16 19 Si 0.92 18.09 29.56 -169.99 -5.02 13.06 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 21 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.28 -6.79 9.85 -39.07 -0.38 -7.17 16 24 C 0.12 2.77 11.10 -18.05 -0.20 2.57 16 25 N -0.55 -13.70 7.86 -12.76 -0.10 -13.80 16 26 C -0.14 -2.01 3.00 -90.62 -0.27 -2.28 16 27 C -0.15 -1.88 7.89 -26.73 -0.21 -2.09 16 28 C -0.18 -2.33 9.77 -26.74 -0.26 -2.60 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 1.98 6.39 -51.93 -0.33 1.65 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.04 4.51 -51.92 -0.23 0.81 16 35 H 0.06 0.59 7.08 -51.93 -0.37 0.22 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.39 3.94 8.50 -40.82 -0.35 3.60 16 38 H 0.40 6.32 8.72 -40.82 -0.36 5.97 16 39 H 0.13 3.25 6.31 -52.49 -0.33 2.92 16 40 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 41 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 43 H 0.11 1.89 7.41 -51.93 -0.38 1.50 16 44 H 0.10 1.11 5.78 -51.93 -0.30 0.81 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.09 1.09 7.61 -51.93 -0.40 0.69 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -31.43 380.23 -9.25 -40.68 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -6.40 Total: 17.43 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -3.15 Total: 1.23 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.15 Total: -55.69 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.56 Total: -22.44 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.43 -9.25 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434742924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.622 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds