Wall clock time and date at job start Wed Apr 1 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00277 * 2 1 4 4 O 1.20827 * 120.00017 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00199 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47294 * 299.99405 * 6 5 3 8 8 N 1.46504 * 109.46987 * 179.97438 * 6 5 3 9 9 C 1.34776 * 119.99886 * 294.59577 * 8 6 5 10 10 O 1.21580 * 120.00044 * 5.33927 * 9 8 6 11 11 N 1.34783 * 119.99857 * 185.35645 * 9 8 6 12 12 C 1.39459 * 120.00026 * 174.36232 * 11 9 8 13 13 C 1.38637 * 119.64890 * 185.02419 * 12 11 9 14 14 C 1.40821 * 118.67442 * 179.97438 * 13 12 11 15 15 C 1.41545 * 120.99705 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00291 * 148.04984 * 15 14 13 17 17 C 1.40035 * 119.99658 * 328.04697 * 15 14 13 18 18 N 1.30740 * 120.00220 * 356.99090 * 17 15 14 19 19 Si 1.86802 * 119.99774 * 176.98809 * 17 15 14 20 20 H 1.48500 * 109.47301 * 89.99988 * 19 17 15 21 21 H 1.48498 * 109.46925 * 210.00190 * 19 17 15 22 22 H 1.48503 * 109.47254 * 329.99968 * 19 17 15 23 23 C 1.41160 * 118.00460 * 0.02562 * 14 13 12 24 24 C 1.36583 * 119.13045 * 359.97438 * 23 14 13 25 25 N 1.32073 * 121.25760 * 359.74382 * 24 23 14 26 26 C 1.53000 * 109.47447 * 60.00187 * 6 5 3 27 27 C 1.53002 * 117.49648 * 248.59485 * 26 6 5 28 28 C 1.52995 * 117.50108 * 179.97438 * 26 6 5 29 29 H 1.08999 * 109.47061 * 300.00289 * 1 2 3 30 30 H 1.08998 * 109.46870 * 60.00092 * 1 2 3 31 31 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46883 * 300.00006 * 5 3 2 33 33 H 1.08999 * 109.47060 * 59.99549 * 5 3 2 34 34 H 1.09009 * 109.46754 * 60.00361 * 7 6 5 35 35 H 1.08998 * 109.47544 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47473 * 300.00562 * 7 6 5 37 37 H 0.96999 * 119.99946 * 114.58100 * 8 6 5 38 38 H 0.97004 * 119.99808 * 354.34736 * 11 9 8 39 39 H 1.08000 * 120.66428 * 0.02562 * 13 12 11 40 40 H 0.97005 * 120.00241 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.43460 * 179.97438 * 23 14 13 42 42 H 1.08004 * 119.37300 * 179.97438 * 24 23 14 43 43 H 1.08994 * 115.54923 * 34.29470 * 26 6 5 44 44 H 1.08997 * 117.49842 * 359.97438 * 27 26 6 45 45 H 1.08997 * 117.50234 * 145.01999 * 27 26 6 46 46 H 1.08990 * 117.50152 * 214.97794 * 28 26 6 47 47 H 1.09001 * 117.49889 * 359.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 6 3.4538 3.4347 -1.2501 8 7 5.4632 2.8186 0.0010 9 6 6.1607 2.3696 1.0632 10 8 5.5843 1.8130 1.9777 11 7 7.4971 2.5378 1.1119 12 6 8.2035 2.1803 2.2600 13 6 9.5604 2.4524 2.3428 14 6 10.2535 2.0830 3.5117 15 6 11.6393 2.3368 3.6484 16 1 12.0563 2.5471 4.6221 17 6 12.4695 2.3150 2.5209 18 7 11.9757 2.0027 1.3513 19 14 14.2827 2.7323 2.6880 20 1 15.0517 1.4939 2.9709 21 1 14.7695 3.3394 1.4232 22 1 14.4682 3.6956 3.8029 23 6 9.5249 1.4512 4.5425 24 6 8.1891 1.2245 4.3700 25 7 7.5696 1.5893 3.2621 26 6 3.4527 3.4364 1.2484 27 6 2.3624 4.4912 1.0492 28 6 3.7802 4.9195 1.4329 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9557 0.7808 0.8908 33 1 3.9565 0.7804 -0.8891 34 1 2.3652 3.3777 -1.2506 35 1 3.7632 4.4799 -1.2510 36 1 3.8439 2.9400 -2.1396 37 1 5.9299 3.1924 -0.7628 38 1 7.9675 2.9073 0.3483 39 1 10.0755 2.9386 1.5275 40 1 12.5510 1.9872 0.5704 41 1 10.0173 1.1510 5.4557 42 1 7.6280 0.7410 5.1560 43 1 3.3974 2.8179 2.1441 44 1 2.0355 4.6906 0.0287 45 1 1.5895 4.5668 1.8141 46 1 3.9401 5.2768 2.4500 47 1 4.3861 5.4004 0.6649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434742924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:14 Heat of formation + Delta-G solvation = -53.610027 kcal Electronic energy + Delta-G solvation = -31005.991501 eV Core-core repulsion = 26768.986921 eV Total energy + Delta-G solvation = -4237.004580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10211 -41.20381 -40.14142 -38.86373 -37.24562 -36.06991 -35.41894 -35.38553 -32.66491 -32.28282 -30.25499 -29.57077 -27.95979 -27.85462 -25.04649 -23.83605 -23.62677 -23.11104 -22.20230 -21.77085 -20.10828 -19.57916 -19.19846 -18.61799 -17.76538 -17.62584 -17.48077 -16.99069 -16.53265 -16.23525 -16.04617 -16.01045 -15.86277 -15.45730 -14.97754 -14.68453 -14.48791 -14.32694 -14.23541 -14.10976 -13.68829 -13.40583 -13.16387 -13.01129 -12.90357 -12.83205 -12.67452 -12.53477 -12.12447 -12.08060 -12.00783 -11.85940 -11.73632 -11.46890 -11.33214 -11.20233 -11.14286 -11.05821 -10.72251 -10.08707 -9.81012 -9.56700 -8.80377 -8.51793 -6.55308 0.86899 1.04034 1.22802 1.42769 1.49412 1.55264 1.57682 1.93069 2.23293 2.38860 2.87870 2.97579 3.33952 3.51120 3.70942 3.77636 3.89315 4.08090 4.15831 4.19606 4.29771 4.33550 4.36684 4.42450 4.56800 4.70653 4.73141 4.73406 4.80276 4.88504 4.91054 4.94519 4.97219 5.10804 5.14565 5.20887 5.27872 5.28260 5.39955 5.48393 5.52217 5.64221 5.69921 5.91497 6.04599 6.31987 6.60043 6.79566 6.83041 6.88062 7.07737 7.70420 7.94416 8.36133 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.002416 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.779645 B =11587.146281 C =11858.948170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.471 3.529 4 O -0.503 6.503 5 C -0.126 4.126 6 C 0.246 3.754 7 C -0.163 4.163 8 N -0.722 5.722 9 C 0.694 3.306 10 O -0.564 6.564 11 N -0.662 5.662 12 C 0.355 3.645 13 C -0.252 4.252 14 C 0.115 3.885 15 C -0.489 4.489 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.825 5.825 19 Si 0.989 3.011 20 H -0.266 1.266 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.292 4.292 24 C 0.111 3.889 25 N -0.568 5.568 26 C -0.157 4.157 27 C -0.132 4.132 28 C -0.179 4.179 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.411 0.589 38 H 0.418 0.582 39 H 0.126 0.874 40 H 0.289 0.711 41 H 0.114 0.886 42 H 0.146 0.854 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 2.293 -10.961 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.290 6.290 3 C 0.314 3.686 4 O -0.391 6.391 5 C -0.165 4.165 6 C 0.159 3.841 7 C -0.220 4.220 8 N -0.380 5.380 9 C 0.394 3.606 10 O -0.437 6.437 11 N -0.311 5.311 12 C 0.127 3.873 13 C -0.278 4.278 14 C 0.106 3.894 15 C -0.520 4.520 16 H 0.099 0.901 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.810 3.190 20 H -0.191 1.191 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.316 4.316 24 C -0.043 4.043 25 N -0.288 5.288 26 C -0.177 4.177 27 C -0.170 4.170 28 C -0.217 4.217 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.115 0.885 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.248 0.752 38 H 0.256 0.744 39 H 0.144 0.856 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.163 0.837 43 H 0.088 0.912 44 H 0.135 0.865 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.377 1.921 -10.496 20.392 hybrid contribution 2.120 0.320 -0.003 2.144 sum -15.257 2.241 -10.499 18.656 Atomic orbital electron populations 1.23507 0.74742 1.05378 1.02676 1.86514 1.25117 1.33378 1.83989 1.23461 0.91809 0.81399 0.71952 1.90590 1.67356 1.35813 1.45381 1.21831 0.88141 0.99824 1.06688 1.19218 0.77588 0.91743 0.95545 1.22418 1.03976 1.01284 0.94346 1.45150 1.05998 1.67575 1.19271 1.16207 0.81179 0.79753 0.83457 1.90949 1.68509 1.45822 1.38457 1.42480 1.06369 1.66005 1.16249 1.18162 0.88040 0.94157 0.86935 1.21594 0.91132 1.11802 1.03251 1.18021 0.93852 0.86769 0.90714 1.19801 0.92261 1.44399 0.95573 0.90124 1.26758 1.05805 0.91537 0.93859 1.69772 1.39566 1.35142 1.00697 0.85090 0.75535 0.79299 0.79080 1.19052 1.18922 1.18350 1.21922 0.96256 1.10634 1.02740 1.21909 0.91956 0.96300 0.94095 1.67351 1.39311 1.20009 1.02105 1.22309 1.05110 0.91712 0.98552 1.22950 0.90485 1.00268 1.03263 1.22888 1.00240 0.96643 1.01888 0.92318 0.91084 0.85778 0.88530 0.85933 0.88439 0.90457 0.90116 0.75158 0.74444 0.85591 0.90031 0.86756 0.83661 0.91242 0.86512 0.90035 0.90956 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.37 -8.24 10.56 -51.37 -0.54 -8.79 16 3 C 0.47 11.13 7.39 71.24 0.53 11.65 16 4 O -0.50 -12.24 10.82 21.96 0.24 -12.00 16 5 C -0.13 -3.08 4.87 29.85 0.15 -2.93 16 6 C 0.25 5.70 0.62 3.60 0.00 5.71 16 7 C -0.16 -2.63 6.91 71.98 0.50 -2.13 16 8 N -0.72 -17.77 4.98 -438.01 -2.18 -19.96 16 9 C 0.69 25.09 7.93 179.05 1.42 26.51 16 10 O -0.56 -25.13 11.47 -3.97 -0.05 -25.17 16 11 N -0.66 -25.24 5.40 -322.36 -1.74 -26.98 16 12 C 0.36 17.22 7.42 132.76 0.99 18.20 16 13 C -0.25 -12.92 8.58 23.00 0.20 -12.72 16 14 C 0.11 6.15 5.57 -21.11 -0.12 6.04 16 15 C -0.49 -25.47 9.12 23.52 0.21 -25.25 16 16 H 0.08 4.04 7.85 -2.91 -0.02 4.01 16 17 C 0.04 1.70 5.38 85.29 0.46 2.16 16 18 N -0.83 -40.52 10.76 21.84 0.24 -40.29 16 19 Si 0.99 36.43 29.56 68.60 2.03 38.45 16 20 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 21 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 23 C -0.29 -14.57 9.85 22.60 0.22 -14.35 16 24 C 0.11 5.38 11.10 84.27 0.94 6.32 16 25 N -0.57 -29.14 7.86 -194.27 -1.53 -30.67 16 26 C -0.16 -4.43 3.00 -10.79 -0.03 -4.46 16 27 C -0.13 -3.08 7.89 30.59 0.24 -2.84 16 28 C -0.18 -4.64 9.77 30.59 0.30 -4.34 16 29 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 30 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 3.09 6.39 -2.39 -0.02 3.07 16 33 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 1.73 4.51 -2.38 -0.01 1.72 16 35 H 0.08 1.09 7.08 -2.39 -0.02 1.08 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.41 7.21 8.50 -92.71 -0.79 6.42 16 38 H 0.42 12.88 8.72 -92.71 -0.81 12.07 16 39 H 0.13 6.43 6.31 -2.91 -0.02 6.42 16 40 H 0.29 12.74 8.29 -92.70 -0.77 11.97 16 41 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 42 H 0.15 6.14 8.06 -2.91 -0.02 6.11 16 43 H 0.07 2.53 7.41 -2.39 -0.02 2.52 16 44 H 0.12 2.32 5.78 -2.39 -0.01 2.30 16 45 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.10 2.33 7.61 -2.39 -0.02 2.31 16 Total: -1.00 -69.90 380.23 3.09 -66.81 By element: Atomic # 1 Polarization: 49.94 SS G_CDS: -0.56 Total: 49.38 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 7.19 Total: 9.21 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -5.21 Total: -117.89 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.35 Total: -45.96 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.45 kcal Total: -69.90 3.09 -66.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434742924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.196 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds