Wall clock time and date at job start Wed Apr 1 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47192 * 2 1 4 4 C 1.52999 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.66655 * 55.29091 * 4 3 2 6 6 C 1.50065 * 109.38382 * 175.46002 * 4 3 2 7 7 O 1.21282 * 118.49948 * 287.28076 * 6 4 3 8 8 N 1.33383 * 123.01461 * 107.48952 * 6 4 3 9 9 C 1.45650 * 124.58737 * 4.08742 * 8 6 4 10 10 C 1.52992 * 110.77214 * 338.11507 * 9 8 6 11 11 N 1.47054 * 109.56836 * 295.00058 * 4 3 2 12 12 C 1.34771 * 121.35384 * 102.93676 * 11 4 3 13 13 O 1.21592 * 119.99918 * 184.68493 * 12 11 4 14 14 N 1.34776 * 120.00474 * 4.67691 * 12 11 4 15 15 C 1.40024 * 120.00341 * 175.19510 * 14 12 11 16 16 C 1.38911 * 119.99787 * 35.85364 * 15 14 12 17 17 C 1.38016 * 119.99487 * 179.97438 * 16 15 14 18 18 C 1.38894 * 120.00210 * 0.27145 * 17 16 15 19 19 O 1.35790 * 120.00103 * 179.72376 * 18 17 16 20 20 C 1.34813 * 116.99501 * 5.85733 * 19 18 17 21 21 H 1.08002 * 120.00223 * 5.19561 * 20 19 18 22 22 C 1.38628 * 119.99672 * 185.18468 * 20 19 18 23 23 N 1.31568 * 120.00203 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47146 * 60.00495 * 24 22 20 26 26 H 1.48505 * 109.47217 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47348 * 300.00499 * 24 22 20 28 28 C 1.38910 * 120.00439 * 359.45073 * 18 17 16 29 29 C 1.38007 * 119.99590 * 0.55021 * 28 18 17 30 30 H 1.08994 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46755 * 300.00492 * 1 2 3 32 32 H 1.09009 * 109.46785 * 59.99657 * 1 2 3 33 33 H 1.09000 * 109.47337 * 239.99906 * 2 1 3 34 34 H 1.09000 * 109.47224 * 119.99653 * 2 1 3 35 35 H 1.09000 * 109.47057 * 59.99734 * 3 2 1 36 36 H 1.09000 * 109.47066 * 299.99494 * 3 2 1 37 37 H 0.96999 * 117.70821 * 184.10188 * 8 6 4 38 38 H 1.08997 * 109.21642 * 217.78157 * 9 8 6 39 39 H 1.09004 * 109.18331 * 98.42894 * 9 8 6 40 40 H 1.08997 * 109.72156 * 287.05355 * 10 9 8 41 41 H 1.09000 * 109.75493 * 166.41886 * 10 9 8 42 42 H 0.97005 * 119.99575 * 355.20215 * 14 12 11 43 43 H 1.07998 * 120.00191 * 359.97438 * 16 15 14 44 44 H 1.08001 * 119.99566 * 180.02562 * 17 16 15 45 45 H 0.97001 * 119.99979 * 179.97438 * 23 22 20 46 46 H 1.07995 * 120.00234 * 180.27459 * 28 18 17 47 47 H 1.08004 * 120.00172 * 179.74626 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9372 0.8580 -0.8429 6 6 4.0681 2.8537 -0.1114 7 8 3.9620 3.4219 -1.1776 8 7 4.6260 3.5104 0.9067 9 6 4.9003 2.9300 2.2141 10 6 4.0172 1.7051 2.4600 11 7 4.0620 0.8571 1.2567 12 6 4.5396 -0.4022 1.3037 13 8 4.8607 -0.8913 2.3696 14 7 4.6613 -1.1196 0.1692 15 6 5.2505 -2.3894 0.2036 16 6 5.0462 -3.2204 1.2978 17 6 5.6265 -4.4722 1.3313 18 6 6.4193 -4.8988 0.2736 19 8 6.9948 -6.1282 0.3092 20 6 6.6602 -6.9309 1.3393 21 1 5.9011 -6.6200 2.0418 22 6 7.2905 -8.1556 1.4967 23 7 8.2154 -8.5343 0.6411 24 14 6.8274 -9.2676 2.9245 25 1 5.3863 -9.6147 2.8345 26 1 7.6404 -10.5091 2.8690 27 1 7.0877 -8.5629 4.2055 28 6 6.6189 -4.0701 -0.8232 29 6 6.0387 -2.8184 -0.8568 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 4.8656 4.4399 0.7667 38 1 4.7039 3.6745 2.9855 39 1 5.9478 2.6324 2.2612 40 1 2.9917 2.0228 2.6481 41 1 4.3923 1.1466 3.3176 42 1 4.3408 -0.7562 -0.6711 43 1 4.4334 -2.8870 2.1221 44 1 5.4674 -5.1185 2.1818 45 1 8.6566 -9.3910 0.7515 46 1 7.2317 -4.4036 -1.6476 47 1 6.1972 -2.1723 -1.7077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647121748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:39 Heat of formation + Delta-G solvation = -51.104024 kcal Electronic energy + Delta-G solvation = -30743.908561 eV Core-core repulsion = 26507.012650 eV Total energy + Delta-G solvation = -4236.895911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46884 -39.91268 -38.76436 -37.20125 -36.32784 -36.04065 -34.01138 -33.61498 -32.15948 -30.70591 -30.18500 -29.08426 -27.56886 -25.47388 -25.12584 -24.13038 -22.38270 -21.66349 -21.64727 -20.63686 -19.04889 -18.96163 -17.98145 -17.64696 -17.29342 -16.74090 -16.45040 -16.10353 -15.49867 -15.31461 -15.03229 -14.71062 -14.49289 -14.32239 -14.17712 -13.70800 -13.60855 -13.55925 -13.26339 -13.10755 -12.86407 -12.71049 -12.56513 -12.12494 -12.01788 -11.83743 -11.73120 -11.52201 -11.45931 -11.43901 -11.01292 -10.98237 -10.79660 -10.64907 -10.44795 -10.00123 -9.64371 -9.60388 -9.24906 -9.02104 -8.67533 -8.18874 -6.92438 -6.42907 -4.00542 2.08190 2.10314 2.19430 2.32856 2.78160 3.11277 3.15828 3.19238 3.19753 3.65893 3.89112 3.99286 4.26331 4.39053 4.43136 4.59621 4.63638 4.74077 4.79045 4.85004 5.12395 5.14625 5.25367 5.27257 5.28419 5.35185 5.46119 5.48225 5.68438 5.74705 5.80257 5.81847 5.86944 6.00281 6.13625 6.16789 6.25676 6.35380 6.52873 6.74141 6.77885 6.94489 7.07991 7.12701 7.32463 7.45686 7.66875 7.79147 7.84737 8.02084 8.51959 9.02862 9.72570 10.75062 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.002337 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.469166 B =11976.378484 C =12138.064764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.122 4.122 4 C 0.130 3.870 5 H 0.116 0.884 6 C 0.520 3.480 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.093 3.907 10 C 0.113 3.887 11 N -0.631 5.631 12 C 0.711 3.289 13 O -0.566 6.566 14 N -0.671 5.671 15 C 0.049 3.951 16 C -0.061 4.061 17 C -0.220 4.220 18 C 0.146 3.854 19 O -0.177 6.177 20 C -0.390 4.390 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.177 4.177 29 C -0.093 4.093 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.401 0.599 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.395 0.605 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.270 0.730 46 H 0.121 0.879 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 23.091 1.641 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.161 4.161 4 C 0.022 3.978 5 H 0.134 0.866 6 C 0.306 3.694 7 O -0.421 6.421 8 N -0.366 5.366 9 C -0.032 4.032 10 C -0.010 4.010 11 N -0.372 5.372 12 C 0.413 3.587 13 O -0.442 6.442 14 N -0.320 5.320 15 C -0.044 4.044 16 C -0.082 4.082 17 C -0.240 4.240 18 C 0.092 3.908 19 O -0.080 6.080 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.197 4.197 29 C -0.114 4.114 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.236 0.764 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.232 0.768 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.080 0.920 46 H 0.139 0.861 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.699 22.443 1.738 25.369 hybrid contribution -0.188 0.131 0.363 0.430 sum -11.887 22.574 2.101 25.599 Atomic orbital electron populations 1.21719 0.95153 1.02072 1.01681 1.21527 0.96542 0.95274 1.02864 1.21932 0.91415 0.98975 1.03782 1.21354 0.96470 0.91277 0.88706 0.86647 1.20045 0.77166 0.88667 0.83566 1.90806 1.56713 1.68026 1.26583 1.45356 1.62443 1.15812 1.13021 1.21865 1.00720 0.96339 0.84279 1.21808 1.00183 0.90078 0.88952 1.47430 1.67562 1.12986 1.09172 1.15712 0.78280 0.79899 0.84760 1.90948 1.55729 1.69209 1.28301 1.42459 1.63338 1.17159 1.09022 1.17022 1.03692 0.84607 0.99051 1.20836 0.98385 0.91905 0.97027 1.21103 1.04619 0.97433 1.00802 1.19418 0.91872 0.86471 0.93010 1.83991 1.59213 1.19422 1.45391 1.21274 1.21754 0.97883 1.05728 0.89112 1.25274 0.95635 0.97000 0.98584 1.70033 1.23406 1.21478 1.34918 0.85796 0.78726 0.78931 0.80084 1.19489 1.20311 1.19473 1.19967 1.06653 0.94302 0.98813 1.20336 0.96993 0.96121 0.97914 0.92324 0.92823 0.92634 0.91561 0.91413 0.90907 0.89551 0.76365 0.89010 0.90785 0.90433 0.86474 0.76847 0.85664 0.85244 0.91990 0.86067 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.12 -0.89 4.77 -26.73 -0.13 -1.02 16 4 C 0.13 1.11 2.41 -69.09 -0.17 0.95 16 5 H 0.12 0.98 5.88 -51.93 -0.31 0.67 16 6 C 0.52 4.96 7.07 -11.91 -0.08 4.88 16 7 O -0.54 -7.01 17.80 5.56 0.10 -6.91 16 8 N -0.71 -4.92 5.42 -61.45 -0.33 -5.26 16 9 C 0.09 0.50 7.34 -4.50 -0.03 0.46 16 10 C 0.11 0.81 6.39 -3.63 -0.02 0.78 16 11 N -0.63 -6.09 2.26 -172.44 -0.39 -6.48 16 12 C 0.71 9.75 7.22 -86.92 -0.63 9.12 16 13 O -0.57 -9.88 13.31 5.29 0.07 -9.81 16 14 N -0.67 -9.10 5.25 -14.18 -0.07 -9.17 16 15 C 0.05 0.85 6.29 -83.62 -0.53 0.33 16 16 C -0.06 -1.21 8.69 -39.41 -0.34 -1.56 16 17 C -0.22 -4.91 9.13 -39.42 -0.36 -5.27 16 18 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 19 O -0.18 -5.04 9.76 -0.03 0.00 -5.04 16 20 C -0.39 -10.94 9.44 30.88 0.29 -10.65 16 21 H 0.09 2.36 5.29 -52.49 -0.28 2.09 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 24 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 28 C -0.18 -3.67 9.99 -39.42 -0.39 -4.07 16 29 C -0.09 -1.62 9.96 -39.42 -0.39 -2.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.67 7.06 -51.93 -0.37 0.30 16 35 H 0.07 0.49 7.37 -51.93 -0.38 0.10 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 2.26 8.80 -40.82 -0.36 1.91 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.42 7.42 -51.93 -0.39 0.04 16 41 H 0.12 0.97 7.07 -51.93 -0.37 0.60 16 42 H 0.40 4.23 6.44 -40.82 -0.26 3.96 16 43 H 0.13 2.45 6.27 -52.49 -0.33 2.12 16 44 H 0.13 2.92 5.70 -52.49 -0.30 2.62 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 47 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -34.90 383.49 -8.31 -43.21 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.28 Total: 8.29 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.92 Total: -5.63 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.04 Total: -45.52 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.90 -8.31 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647121748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.889 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds