Wall clock time and date at job start Wed Apr 1 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00294 * 2 1 4 4 C 1.52996 * 109.47281 * 270.00471 * 3 2 1 5 5 C 1.53001 * 109.46786 * 299.99779 * 4 3 2 6 6 C 1.52997 * 109.47542 * 59.99803 * 4 3 2 7 7 C 1.53004 * 109.47313 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47169 * 179.97438 * 7 4 3 9 9 C 1.36940 * 119.99773 * 179.97438 * 8 7 4 10 10 H 1.07995 * 120.00554 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99662 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00365 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99733 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47254 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47435 * 120.00305 * 13 11 9 16 16 H 1.48512 * 109.46993 * 240.00024 * 13 11 9 17 17 C 1.34781 * 119.99697 * 180.02562 * 2 1 3 18 18 O 1.21496 * 119.99385 * 183.52623 * 17 2 1 19 19 C 1.48341 * 119.99969 * 3.52992 * 17 2 1 20 20 C 1.41714 * 126.80917 * 173.47775 * 19 17 2 21 21 C 1.37159 * 103.79777 * 179.97438 * 20 19 17 22 22 C 1.47010 * 126.85940 * 180.02562 * 21 20 19 23 23 C 1.36346 * 125.96092 * 180.02562 * 22 21 20 24 24 C 1.40703 * 106.71631 * 179.97438 * 23 22 21 25 25 C 1.34890 * 107.07978 * 359.97438 * 24 23 22 26 26 O 1.34223 * 108.73517 * 359.77311 * 25 24 23 27 27 O 1.34587 * 106.27742 * 359.97438 * 21 20 19 28 28 N 1.20866 * 111.69498 * 0.02562 * 27 21 20 29 29 H 1.09001 * 109.46947 * 264.12296 * 1 2 3 30 30 H 1.08999 * 109.46883 * 24.11935 * 1 2 3 31 31 H 1.09001 * 109.47219 * 144.11956 * 1 2 3 32 32 H 1.09008 * 109.46741 * 30.00246 * 3 2 1 33 33 H 1.09002 * 109.47096 * 149.99862 * 3 2 1 34 34 H 1.08991 * 109.47337 * 60.00090 * 5 4 3 35 35 H 1.09007 * 109.46910 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.47227 * 299.99821 * 5 4 3 37 37 H 1.08998 * 109.47008 * 59.99736 * 6 4 3 38 38 H 1.08996 * 109.47617 * 180.02562 * 6 4 3 39 39 H 1.09000 * 109.47080 * 300.00105 * 6 4 3 40 40 H 1.08998 * 109.46805 * 300.00000 * 7 4 3 41 41 H 1.09002 * 109.46981 * 59.99441 * 7 4 3 42 42 H 0.96999 * 120.00191 * 0.02562 * 8 7 4 43 43 H 0.96996 * 119.99635 * 180.02562 * 12 11 9 44 44 H 1.08004 * 128.10162 * 0.23981 * 20 19 17 45 45 H 1.07999 * 126.64571 * 359.92133 * 23 22 21 46 46 H 1.07996 * 126.45868 * 179.97438 * 24 23 22 47 47 H 1.08003 * 125.62918 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2793 0.6441 -2.1637 6 6 1.1157 1.8935 -2.1637 7 6 3.2170 3.0358 -1.4425 8 7 3.4617 3.4584 -2.8236 9 6 4.1341 4.6248 -3.0738 10 1 4.4844 5.2330 -2.2530 11 6 4.3654 5.0255 -4.3826 12 7 3.9380 4.2847 -5.3830 13 14 5.2832 6.6163 -4.7238 14 1 5.6536 7.2597 -3.4378 15 1 6.5127 6.3212 -5.5025 16 1 4.4122 7.5330 -5.5027 17 6 2.1389 -1.1673 -0.0005 18 8 3.3521 -1.1682 0.0642 19 6 1.3992 -2.4507 -0.0802 20 6 1.9580 -3.7455 -0.2200 21 6 0.8644 -4.5730 -0.2427 22 6 0.8692 -6.0374 -0.3714 23 6 -0.2307 -6.8429 -0.3924 24 6 0.2369 -8.1628 -0.5300 25 6 1.5833 -8.1023 -0.5865 26 8 1.9613 -6.8176 -0.4959 27 8 -0.2139 -3.7766 -0.1224 28 7 0.0983 -2.6122 -0.0343 29 1 -0.3633 -0.1052 1.0223 30 1 -0.3633 0.9379 -0.4199 31 1 -0.3634 -0.8327 -0.6023 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 2.7344 -0.2998 -2.1638 35 1 3.4614 0.9590 -3.1913 36 1 4.2318 0.5137 -1.6500 37 1 0.5266 2.6530 -1.6498 38 1 1.2973 2.2077 -3.1914 39 1 0.5707 0.9495 -2.1637 40 1 2.6276 3.7951 -0.9287 41 1 4.1694 2.9058 -0.9285 42 1 3.1467 2.9124 -3.5609 43 1 4.1000 4.5646 -6.2975 44 1 3.0010 -4.0174 -0.2879 45 1 -1.2612 -6.5289 -0.3171 46 1 -0.3681 -9.0560 -0.5809 47 1 2.2472 -8.9476 -0.6918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674847976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:13 Heat of formation + Delta-G solvation = 76.250263 kcal Electronic energy + Delta-G solvation = -30247.369421 eV Core-core repulsion = 26015.996006 eV Total energy + Delta-G solvation = -4231.373415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.42797 -43.06837 -40.23387 -37.41147 -35.29348 -34.41945 -33.85717 -33.26131 -32.75768 -30.20403 -29.28212 -27.91979 -27.08058 -26.20078 -25.55461 -24.17827 -23.82966 -22.68432 -21.99538 -21.74128 -19.85344 -18.64945 -18.34153 -18.27825 -17.37954 -17.20530 -16.81630 -16.53511 -16.12827 -15.62935 -15.27194 -14.61162 -14.36043 -14.13455 -13.82666 -13.71583 -13.47776 -13.34212 -13.25329 -13.20443 -12.99133 -12.79844 -12.63736 -12.32153 -12.16103 -11.62951 -11.25430 -11.17301 -11.01211 -10.94709 -10.84799 -10.80884 -10.66938 -10.43026 -10.41374 -10.23136 -10.12726 -9.82315 -9.65247 -8.83063 -8.69280 -8.63439 -6.85339 -5.72177 -2.99664 0.18114 0.99912 1.54930 1.66855 2.24183 2.64634 2.99117 3.18837 3.46151 3.51703 3.54004 3.55581 3.85671 4.37172 4.41734 4.48105 4.63104 4.64160 4.81945 5.07283 5.14477 5.16392 5.23301 5.29190 5.37236 5.40654 5.45664 5.46716 5.59673 5.71090 5.75919 5.85402 5.89584 5.95463 6.11479 6.15604 6.29910 6.40043 6.42583 6.51368 6.60095 6.75156 6.78484 6.95010 6.97569 7.16504 7.52786 7.75045 7.94625 8.47313 9.58462 10.17585 10.52310 11.51040 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.001977 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.007001 B =14158.003714 C =14687.297876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.591 5.591 3 C 0.126 3.874 4 C -0.086 4.086 5 C -0.125 4.125 6 C -0.137 4.137 7 C 0.166 3.834 8 N -0.728 5.728 9 C -0.235 4.235 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.593 3.407 18 O -0.511 6.511 19 C -0.009 4.009 20 C -0.151 4.151 21 C 0.037 3.963 22 C 0.041 3.959 23 C -0.156 4.156 24 C -0.215 4.215 25 C -0.013 4.013 26 O -0.158 6.158 27 O 0.135 5.865 28 N -0.318 5.318 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.019 0.981 41 H 0.021 0.979 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.188 0.812 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 -26.059 13.441 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.323 5.323 3 C 0.004 3.996 4 C -0.088 4.088 5 C -0.183 4.183 6 C -0.194 4.194 7 C 0.038 3.962 8 N -0.373 5.373 9 C -0.366 4.366 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.378 3.622 18 O -0.385 6.385 19 C -0.167 4.167 20 C -0.173 4.173 21 C -0.027 4.027 22 C -0.010 4.010 23 C -0.176 4.176 24 C -0.234 4.234 25 C -0.082 4.082 26 O -0.053 6.053 27 O 0.059 5.941 28 N -0.020 5.020 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.205 0.795 45 H 0.178 0.822 46 H 0.175 0.825 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.683 -24.828 13.638 30.642 hybrid contribution 0.826 0.198 -0.665 1.078 sum -10.858 -24.630 12.973 29.880 Atomic orbital electron populations 1.22260 0.78747 1.04300 1.02313 1.47632 1.07521 1.05692 1.71424 1.21702 0.97539 0.82801 0.97546 1.21123 0.96584 0.97130 0.93935 1.21732 0.99212 0.96138 1.01189 1.21891 0.95693 0.99935 1.01913 1.20575 0.95702 0.91019 0.88936 1.42393 1.68174 1.25779 1.00948 1.19291 1.27520 0.98070 0.91760 0.91174 1.24729 1.01858 0.99006 0.95596 1.69671 1.51733 1.38856 0.98087 0.86117 0.79173 0.83207 0.77710 1.20597 1.21949 1.21977 1.16833 0.86280 0.81350 0.77765 1.90838 1.12231 1.86109 1.49312 1.23424 0.89714 0.97070 1.06463 1.22746 1.01322 0.89349 1.03860 1.20435 0.86506 0.89391 1.06320 1.18055 0.85258 0.86571 1.11084 1.22011 0.99394 0.92451 1.03766 1.21840 0.94757 0.98408 1.08375 1.24388 0.96530 0.83538 1.03696 1.84077 1.33340 1.17350 1.70529 1.84942 1.31865 1.11521 1.65803 1.74354 1.15634 0.95400 1.16610 0.92443 0.89893 0.89612 0.89999 0.89317 0.94652 0.91842 0.92389 0.93080 0.91326 0.93682 0.96371 0.96167 0.78004 0.93647 0.79511 0.82172 0.82461 0.77005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 8.36 59.85 0.50 1.21 16 2 N -0.59 -7.83 2.40 -182.50 -0.44 -8.27 16 3 C 0.13 1.79 4.58 -4.05 -0.02 1.77 16 4 C -0.09 -1.47 0.60 -154.51 -0.09 -1.56 16 5 C -0.13 -2.33 7.02 37.16 0.26 -2.07 16 6 C -0.14 -2.23 7.07 37.16 0.26 -1.96 16 7 C 0.17 3.42 5.15 -4.04 -0.02 3.40 16 8 N -0.73 -18.70 5.00 -59.91 -0.30 -19.00 16 9 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 13 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 C 0.59 8.69 5.99 -12.10 -0.07 8.62 16 18 O -0.51 -8.85 15.00 5.37 0.08 -8.77 16 19 C -0.01 -0.12 6.85 -82.66 -0.57 -0.68 16 20 C -0.15 -1.67 10.97 -38.65 -0.42 -2.10 16 21 C 0.04 0.36 7.30 -36.42 -0.27 0.09 16 22 C 0.04 0.35 7.17 -36.71 -0.26 0.09 16 23 C -0.16 -1.04 10.86 -39.33 -0.43 -1.47 16 24 C -0.21 -1.10 10.88 -39.84 -0.43 -1.53 16 25 C -0.01 -0.06 12.08 29.54 0.36 0.29 16 26 O -0.16 -1.28 10.67 4.58 0.05 -1.23 16 27 O 0.13 1.34 11.21 15.71 0.18 1.52 16 28 N -0.32 -3.60 8.67 33.36 0.29 -3.31 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.82 6.32 -51.93 -0.33 0.49 16 31 H 0.09 0.94 5.37 -51.93 -0.28 0.66 16 32 H 0.08 1.00 8.07 -51.92 -0.42 0.58 16 33 H 0.09 1.35 7.38 -51.93 -0.38 0.96 16 34 H 0.03 0.62 6.19 -51.93 -0.32 0.30 16 35 H 0.06 1.32 6.86 -51.92 -0.36 0.97 16 36 H 0.06 1.13 7.81 -51.93 -0.41 0.72 16 37 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 39 H 0.04 0.65 6.08 -51.93 -0.32 0.33 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.38 10.37 5.36 -40.82 -0.22 10.16 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.19 1.89 8.06 -52.48 -0.42 1.47 16 45 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 47 H 0.21 0.22 8.06 -52.48 -0.42 -0.21 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -33.92 384.42 -6.41 -40.32 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.31 Total: 6.45 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.45 Total: -3.32 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.28 Total: -58.59 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.31 Total: -8.49 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.92 -6.41 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674847976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.575 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds