Wall clock time and date at job start Wed Apr 1 2020 05:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00294 * 2 1 4 4 C 1.52996 * 109.47281 * 270.00471 * 3 2 1 5 5 C 1.53001 * 109.46786 * 299.99779 * 4 3 2 6 6 C 1.52997 * 109.47542 * 59.99803 * 4 3 2 7 7 C 1.53004 * 109.47313 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47169 * 179.97438 * 7 4 3 9 9 C 1.36940 * 119.99773 * 179.97438 * 8 7 4 10 10 H 1.07995 * 120.00554 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99662 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00365 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99733 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47254 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47435 * 120.00305 * 13 11 9 16 16 H 1.48512 * 109.46993 * 240.00024 * 13 11 9 17 17 C 1.34781 * 119.99697 * 180.02562 * 2 1 3 18 18 O 1.21496 * 119.99385 * 183.52623 * 17 2 1 19 19 C 1.48341 * 119.99969 * 3.52992 * 17 2 1 20 20 C 1.41714 * 126.80917 * 173.47775 * 19 17 2 21 21 C 1.37159 * 103.79777 * 179.97438 * 20 19 17 22 22 C 1.47010 * 126.85940 * 180.02562 * 21 20 19 23 23 C 1.36346 * 125.96092 * 180.02562 * 22 21 20 24 24 C 1.40703 * 106.71631 * 179.97438 * 23 22 21 25 25 C 1.34890 * 107.07978 * 359.97438 * 24 23 22 26 26 O 1.34223 * 108.73517 * 359.77311 * 25 24 23 27 27 O 1.34587 * 106.27742 * 359.97438 * 21 20 19 28 28 N 1.20866 * 111.69498 * 0.02562 * 27 21 20 29 29 H 1.09001 * 109.46947 * 264.12296 * 1 2 3 30 30 H 1.08999 * 109.46883 * 24.11935 * 1 2 3 31 31 H 1.09001 * 109.47219 * 144.11956 * 1 2 3 32 32 H 1.09008 * 109.46741 * 30.00246 * 3 2 1 33 33 H 1.09002 * 109.47096 * 149.99862 * 3 2 1 34 34 H 1.08991 * 109.47337 * 60.00090 * 5 4 3 35 35 H 1.09007 * 109.46910 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.47227 * 299.99821 * 5 4 3 37 37 H 1.08998 * 109.47008 * 59.99736 * 6 4 3 38 38 H 1.08996 * 109.47617 * 180.02562 * 6 4 3 39 39 H 1.09000 * 109.47080 * 300.00105 * 6 4 3 40 40 H 1.08998 * 109.46805 * 300.00000 * 7 4 3 41 41 H 1.09002 * 109.46981 * 59.99441 * 7 4 3 42 42 H 0.96999 * 120.00191 * 0.02562 * 8 7 4 43 43 H 0.96996 * 119.99635 * 180.02562 * 12 11 9 44 44 H 1.08004 * 128.10162 * 0.23981 * 20 19 17 45 45 H 1.07999 * 126.64571 * 359.92133 * 23 22 21 46 46 H 1.07996 * 126.45868 * 179.97438 * 24 23 22 47 47 H 1.08003 * 125.62918 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2793 0.6441 -2.1637 6 6 1.1157 1.8935 -2.1637 7 6 3.2170 3.0358 -1.4425 8 7 3.4617 3.4584 -2.8236 9 6 4.1341 4.6248 -3.0738 10 1 4.4844 5.2330 -2.2530 11 6 4.3654 5.0255 -4.3826 12 7 3.9380 4.2847 -5.3830 13 14 5.2832 6.6163 -4.7238 14 1 5.6536 7.2597 -3.4378 15 1 6.5127 6.3212 -5.5025 16 1 4.4122 7.5330 -5.5027 17 6 2.1389 -1.1673 -0.0005 18 8 3.3521 -1.1682 0.0642 19 6 1.3992 -2.4507 -0.0802 20 6 1.9580 -3.7455 -0.2200 21 6 0.8644 -4.5730 -0.2427 22 6 0.8692 -6.0374 -0.3714 23 6 -0.2307 -6.8429 -0.3924 24 6 0.2369 -8.1628 -0.5300 25 6 1.5833 -8.1023 -0.5865 26 8 1.9613 -6.8176 -0.4959 27 8 -0.2139 -3.7766 -0.1224 28 7 0.0983 -2.6122 -0.0343 29 1 -0.3633 -0.1052 1.0223 30 1 -0.3633 0.9379 -0.4199 31 1 -0.3634 -0.8327 -0.6023 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 2.7344 -0.2998 -2.1638 35 1 3.4614 0.9590 -3.1913 36 1 4.2318 0.5137 -1.6500 37 1 0.5266 2.6530 -1.6498 38 1 1.2973 2.2077 -3.1914 39 1 0.5707 0.9495 -2.1637 40 1 2.6276 3.7951 -0.9287 41 1 4.1694 2.9058 -0.9285 42 1 3.1467 2.9124 -3.5609 43 1 4.1000 4.5646 -6.2975 44 1 3.0010 -4.0174 -0.2879 45 1 -1.2612 -6.5289 -0.3171 46 1 -0.3681 -9.0560 -0.5809 47 1 2.2472 -8.9476 -0.6918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674847976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:12 Heat of formation + Delta-G solvation = 55.524886 kcal Electronic energy + Delta-G solvation = -30248.268141 eV Core-core repulsion = 26015.996006 eV Total energy + Delta-G solvation = -4232.272135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.27156 -43.55451 -41.39975 -38.83461 -36.63096 -35.46881 -34.82984 -34.39121 -33.63102 -32.18357 -29.87270 -29.01960 -28.42309 -27.40247 -27.33442 -25.41967 -24.54812 -24.20804 -22.80900 -22.35153 -20.68131 -19.94508 -19.40772 -19.17578 -19.07740 -18.27831 -17.50812 -17.29299 -17.08361 -16.90230 -16.51581 -15.99590 -15.61724 -15.48093 -15.27306 -15.06016 -14.55112 -14.48588 -14.25276 -13.97732 -13.94752 -13.89069 -13.71598 -13.58352 -13.32994 -12.96480 -12.86690 -12.67207 -12.55298 -12.54244 -12.26091 -12.06579 -11.76800 -11.74621 -11.71883 -11.65135 -11.59059 -11.28845 -10.95093 -10.88220 -9.78911 -9.23949 -8.97541 -7.94782 -5.22576 -0.51272 0.08275 0.91577 1.13505 1.46112 1.47297 1.57316 1.61123 1.72194 1.93527 2.55551 2.60489 2.62852 3.12695 3.38681 3.63723 3.71522 3.76974 3.88564 3.90968 3.94109 4.00873 4.21580 4.22222 4.29714 4.41514 4.47718 4.55796 4.61993 4.72959 4.75652 4.76525 4.86134 4.89343 4.92943 4.94758 5.00561 5.09877 5.11741 5.14505 5.38332 5.39250 5.47089 5.47593 5.50847 5.96088 6.09456 6.27758 6.65855 6.87555 7.34189 8.11145 8.34639 9.29291 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.001977 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.007001 B =14158.003714 C =14687.297876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.588 5.588 3 C 0.133 3.867 4 C -0.077 4.077 5 C -0.112 4.112 6 C -0.128 4.128 7 C 0.164 3.836 8 N -0.739 5.739 9 C -0.241 4.241 10 H 0.076 0.924 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.974 3.026 14 H -0.265 1.265 15 H -0.296 1.296 16 H -0.292 1.292 17 C 0.588 3.412 18 O -0.548 6.548 19 C -0.025 4.025 20 C -0.172 4.172 21 C 0.057 3.943 22 C 0.000 4.000 23 C -0.144 4.144 24 C -0.224 4.224 25 C -0.002 4.002 26 O -0.178 6.178 27 O 0.145 5.855 28 N -0.318 5.318 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.014 0.986 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.188 0.812 45 H 0.176 0.824 46 H 0.185 0.815 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 -27.332 14.780 33.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.319 5.319 3 C 0.011 3.989 4 C -0.078 4.078 5 C -0.170 4.170 6 C -0.185 4.185 7 C 0.037 3.963 8 N -0.383 5.383 9 C -0.373 4.373 10 H 0.094 0.906 11 C -0.271 4.271 12 N -0.622 5.622 13 Si 0.804 3.196 14 H -0.190 1.190 15 H -0.223 1.223 16 H -0.219 1.219 17 C 0.374 3.626 18 O -0.424 6.424 19 C -0.182 4.182 20 C -0.195 4.195 21 C -0.007 4.007 22 C -0.050 4.050 23 C -0.164 4.164 24 C -0.242 4.242 25 C -0.070 4.070 26 O -0.074 6.074 27 O 0.068 5.932 28 N -0.018 5.018 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.205 0.795 45 H 0.193 0.807 46 H 0.202 0.798 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -13.314 -26.085 15.027 32.916 hybrid contribution 1.264 0.364 -1.038 1.675 sum -12.049 -25.721 13.990 31.662 Atomic orbital electron populations 1.22424 0.76828 1.04906 1.03559 1.47692 1.08615 1.04913 1.70671 1.21562 0.98101 0.84024 0.95225 1.21013 0.96188 0.94654 0.95982 1.21577 0.99013 0.97063 0.99303 1.21804 0.95472 1.01446 0.99826 1.20723 0.96084 0.93126 0.86363 1.42586 1.67892 1.25083 1.02743 1.19703 1.26812 0.98736 0.92026 0.90577 1.25572 1.03462 1.02495 0.95548 1.69834 1.53479 1.40724 0.98194 0.85053 0.77457 0.79301 0.77833 1.18975 1.22317 1.21939 1.17131 0.86046 0.82265 0.77125 1.90812 1.13798 1.86765 1.51040 1.23201 0.90304 0.96623 1.08062 1.22787 1.01892 0.89216 1.05579 1.20570 0.85698 0.90092 1.04295 1.18080 0.86191 0.86080 1.14654 1.22398 0.99664 0.93027 1.01307 1.22226 0.95111 0.98616 1.08278 1.25297 0.97543 0.83164 1.01030 1.84074 1.33762 1.18573 1.71012 1.84909 1.31783 1.11233 1.65292 1.74321 1.14842 0.95964 1.16713 0.90724 0.88623 0.89775 0.86943 0.90390 0.93903 0.94822 0.93906 0.91255 0.94726 0.91716 0.94927 0.96795 0.79124 0.94108 0.79493 0.80653 0.79812 0.73359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.23 8.36 127.77 1.07 2.30 16 2 N -0.59 -14.95 2.40 -849.61 -2.04 -16.99 16 3 C 0.13 3.62 4.58 86.38 0.40 4.02 16 4 C -0.08 -2.60 0.60 -52.18 -0.03 -2.63 16 5 C -0.11 -4.32 7.02 71.98 0.51 -3.81 16 6 C -0.13 -4.06 7.07 71.98 0.51 -3.55 16 7 C 0.16 6.75 5.15 86.38 0.44 7.19 16 8 N -0.74 -38.68 5.00 -343.45 -1.72 -40.40 16 9 C -0.24 -13.81 9.99 84.03 0.84 -12.98 16 10 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 11 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 12 N -0.97 -61.09 13.06 21.65 0.28 -60.80 16 13 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 C 0.59 17.35 5.99 86.93 0.52 17.87 16 18 O -0.55 -19.60 15.00 -3.70 -0.06 -19.65 16 19 C -0.03 -0.64 6.85 42.79 0.29 -0.35 16 20 C -0.17 -3.93 10.97 22.87 0.25 -3.68 16 21 C 0.06 1.09 7.30 24.32 0.18 1.27 16 22 C 0.00 0.00 7.17 24.13 0.17 0.17 16 23 C -0.14 -1.63 10.86 22.43 0.24 -1.39 16 24 C -0.22 -1.64 10.88 22.10 0.24 -1.40 16 25 C 0.00 -0.02 12.08 67.05 0.81 0.79 16 26 O -0.18 -2.72 10.67 -6.51 -0.07 -2.79 16 27 O 0.15 2.77 11.21 66.40 0.74 3.51 16 28 N -0.32 -6.94 8.67 -48.87 -0.42 -7.37 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.59 6.32 -2.39 -0.02 1.58 16 31 H 0.08 1.68 5.37 -2.39 -0.01 1.67 16 32 H 0.11 2.40 8.07 -2.38 -0.02 2.38 16 33 H 0.08 2.33 7.38 -2.39 -0.02 2.32 16 34 H 0.04 1.55 6.19 -2.39 -0.01 1.54 16 35 H 0.03 1.47 6.86 -2.38 -0.02 1.45 16 36 H 0.04 1.74 7.81 -2.39 -0.02 1.72 16 37 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 38 H 0.03 1.33 6.86 -2.39 -0.02 1.32 16 39 H 0.06 1.77 6.08 -2.39 -0.01 1.76 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.38 20.96 5.36 -92.71 -0.50 20.46 16 43 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 47 H 0.25 -0.38 8.06 -2.91 -0.02 -0.40 16 Total: -1.00 -75.20 384.42 6.17 -69.03 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.51 Total: 26.40 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.91 Total: -0.36 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -3.90 Total: -125.55 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.62 Total: -18.93 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.20 6.17 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674847976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.555 kcal (2) G-P(sol) polarization free energy of solvation -75.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds