Wall clock time and date at job start Wed Apr 1 2020 04:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46975 * 2 1 4 4 N 1.46501 * 109.46665 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99522 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99995 * 0.02562 * 5 4 3 7 7 C 1.47603 * 119.99825 * 179.97438 * 5 4 3 8 8 C 1.39748 * 120.06993 * 180.02562 * 7 5 4 9 9 C 1.37660 * 119.93124 * 180.02562 * 8 7 5 10 10 C 1.39176 * 120.07209 * 359.97438 * 9 8 7 11 11 N 1.39272 * 119.93626 * 179.97438 * 10 9 8 12 12 C 1.34771 * 120.00136 * 146.53562 * 11 10 9 13 13 O 1.21363 * 120.00215 * 354.72239 * 12 11 10 14 14 C 1.49363 * 120.00040 * 174.72893 * 12 11 10 15 15 O 1.21356 * 119.99962 * 359.97438 * 14 12 11 16 16 N 1.34777 * 120.00391 * 180.02562 * 14 12 11 17 17 C 1.46494 * 120.00324 * 179.97438 * 16 14 12 18 18 H 1.08996 * 109.47505 * 325.00443 * 17 16 14 19 19 C 1.53005 * 109.47007 * 85.00103 * 17 16 14 20 20 C 1.50703 * 109.47410 * 205.00023 * 17 16 14 21 21 H 1.08003 * 119.99743 * 359.97438 * 20 17 16 22 22 C 1.37869 * 120.00072 * 180.02562 * 20 17 16 23 23 N 1.31514 * 120.00189 * 0.02562 * 22 20 17 24 24 Si 1.86807 * 120.00110 * 179.97438 * 22 20 17 25 25 H 1.48494 * 109.47491 * 270.00349 * 24 22 20 26 26 H 1.48503 * 109.46723 * 30.00258 * 24 22 20 27 27 H 1.48498 * 109.47132 * 149.99718 * 24 22 20 28 28 C 1.39183 * 120.13624 * 0.27713 * 10 9 8 29 29 C 1.37664 * 120.06232 * 359.44843 * 28 10 9 30 30 H 1.09000 * 109.47122 * 59.99746 * 1 2 3 31 31 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47041 * 299.99657 * 1 2 3 33 33 H 1.09004 * 109.46783 * 240.00052 * 2 1 3 34 34 H 1.08991 * 109.47273 * 120.00272 * 2 1 3 35 35 H 1.08997 * 109.46956 * 60.00291 * 3 2 1 36 36 H 1.09000 * 109.47403 * 300.00082 * 3 2 1 37 37 H 0.96994 * 120.00306 * 359.97438 * 4 3 2 38 38 H 1.07997 * 120.03499 * 0.02562 * 8 7 5 39 39 H 1.08003 * 119.96618 * 179.97438 * 9 8 7 40 40 H 0.96999 * 119.99737 * 326.53967 * 11 10 9 41 41 H 0.97000 * 119.99367 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.47306 * 179.97438 * 19 17 16 43 43 H 1.09000 * 109.47165 * 300.00199 * 19 17 16 44 44 H 1.09006 * 109.47224 * 59.99888 * 19 17 16 45 45 H 0.97003 * 120.00126 * 180.02562 * 23 22 20 46 46 H 1.07994 * 119.96287 * 179.72391 * 28 10 9 47 47 H 1.08000 * 120.02835 * 180.25331 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5709 3.6627 0.0011 7 6 5.6549 2.6097 -0.0003 8 6 6.3552 3.8191 0.0007 9 6 7.7317 3.8158 0.0001 10 6 8.4262 2.6097 -0.0009 11 7 9.8189 2.6096 -0.0020 12 6 10.4933 1.6357 0.6407 13 8 9.8909 0.8138 1.2998 14 6 11.9821 1.5679 0.5418 15 8 12.5845 2.3895 -0.1176 16 7 12.6565 0.5936 1.1840 17 6 14.1167 0.5268 1.0866 18 1 14.4295 0.8448 0.0921 19 6 14.7406 1.4485 2.1364 20 6 14.5720 -0.8895 1.3275 21 1 13.8462 -1.6625 1.5330 22 6 15.9150 -1.1983 1.2864 23 7 16.7989 -0.2568 1.0376 24 14 16.4795 -2.9537 1.5857 25 1 16.7322 -3.1521 3.0355 26 1 15.4250 -3.8965 1.1334 27 1 17.7297 -3.2080 0.8259 28 6 7.7318 1.4035 -0.0071 29 6 6.3552 1.4003 -0.0009 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9900 0.6025 -0.0006 38 1 5.8169 4.7554 0.0019 39 1 8.2735 4.7501 0.0005 40 1 10.3036 3.3106 -0.4653 41 1 12.1750 -0.0633 1.7108 42 1 15.8270 1.3985 2.0643 43 1 14.4113 2.4729 1.9623 44 1 14.4279 1.1305 3.1311 45 1 17.7439 -0.4741 1.0084 46 1 8.2735 0.4693 -0.0124 47 1 5.8169 0.4640 -0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122822291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:23 Heat of formation + Delta-G solvation = -87.886247 kcal Electronic energy + Delta-G solvation = -28741.964172 eV Core-core repulsion = 24503.473264 eV Total energy + Delta-G solvation = -4238.490908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07683 -40.21868 -38.89487 -37.83489 -36.18950 -35.48742 -34.72026 -33.13683 -32.48991 -31.25335 -30.32015 -29.21478 -26.86179 -25.43278 -25.11600 -23.22887 -23.09463 -22.11116 -21.09354 -20.53139 -19.74166 -18.83250 -18.28180 -17.47767 -16.71950 -16.33947 -16.19826 -15.82066 -15.77351 -15.22190 -15.18458 -14.82548 -14.70440 -14.38745 -14.18723 -13.89483 -13.58733 -13.35667 -13.30061 -13.08168 -12.88749 -12.70110 -12.54781 -12.53167 -11.88172 -11.71420 -11.59426 -11.40090 -11.33812 -11.19575 -11.04950 -10.86545 -10.62414 -10.43252 -10.32732 -10.24432 -9.47975 -9.36153 -9.21776 -9.16135 -8.69157 -8.44377 -8.21602 -6.22733 -4.32760 0.44911 1.10659 1.65484 2.47350 2.63900 2.80163 3.20044 3.27157 3.29683 3.48372 3.66778 3.92356 4.27197 4.29861 4.44971 4.46731 4.50255 4.65599 4.72977 4.95301 4.97298 5.10470 5.11157 5.12676 5.13963 5.21480 5.28296 5.50594 5.61054 5.67185 5.70312 5.84995 5.95318 6.00172 6.06720 6.12556 6.60299 6.65407 6.77214 6.91688 6.95915 7.12470 7.12674 7.30581 7.55228 7.67477 7.77503 7.88978 7.98893 8.33610 8.52041 8.77298 9.34575 10.83243 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018277 B = 0.001726 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.619160 B =16219.244768 C =17550.011242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.118 3.882 4 N -0.730 5.730 5 C 0.564 3.436 6 O -0.541 6.541 7 C -0.162 4.162 8 C -0.035 4.035 9 C -0.154 4.154 10 C 0.183 3.817 11 N -0.653 5.653 12 C 0.509 3.491 13 O -0.500 6.500 14 C 0.494 3.506 15 O -0.533 6.533 16 N -0.666 5.666 17 C 0.261 3.739 18 H 0.055 0.945 19 C -0.149 4.149 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.883 5.883 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.273 1.273 27 H -0.284 1.284 28 C -0.132 4.132 29 C -0.063 4.063 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.426 0.574 41 H 0.403 0.597 42 H 0.095 0.905 43 H 0.016 0.984 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.143 0.857 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.050 2.787 -2.711 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.005 4.005 4 N -0.383 5.383 5 C 0.352 3.648 6 O -0.419 6.419 7 C -0.166 4.166 8 C -0.055 4.055 9 C -0.174 4.174 10 C 0.087 3.913 11 N -0.299 5.299 12 C 0.292 3.708 13 O -0.373 6.373 14 C 0.272 3.728 15 O -0.412 6.412 16 N -0.314 5.314 17 C 0.160 3.840 18 H 0.073 0.927 19 C -0.207 4.207 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.135 4.135 23 N -0.520 5.520 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.198 1.198 27 H -0.210 1.210 28 C -0.152 4.152 29 C -0.082 4.082 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.265 0.735 41 H 0.237 0.763 42 H 0.113 0.887 43 H 0.036 0.964 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.161 0.839 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.163 3.498 -2.714 26.535 hybrid contribution 0.651 -1.327 0.242 1.497 sum -25.513 2.171 -2.472 25.724 Atomic orbital electron populations 1.21677 0.94432 1.02268 1.02369 1.21756 0.97121 0.95752 1.02932 1.21423 0.79212 0.97281 1.02603 1.45937 1.07488 1.08751 1.76128 1.18226 0.87242 0.83575 0.75758 1.90773 1.70043 1.31167 1.49945 1.19828 0.92458 0.94537 1.09765 1.21011 0.92882 0.97790 0.93799 1.20937 0.94219 0.96860 1.05390 1.18008 0.82579 0.94327 0.96414 1.43265 1.04497 1.29481 1.52671 1.21065 0.90097 0.80918 0.78690 1.90744 1.70215 1.38569 1.37728 1.19608 0.86299 0.84209 0.82649 1.90743 1.69073 1.40005 1.41350 1.46520 1.10939 1.27344 1.46646 1.19013 0.71469 0.96220 0.97279 0.92694 1.22104 1.04769 0.95881 0.97963 1.21175 0.92687 0.92847 1.50904 0.91727 1.24873 0.96305 0.97930 0.94435 1.69887 1.01988 1.32412 1.47673 0.86387 0.78265 0.83792 0.78337 1.20433 1.19754 1.20992 1.21132 0.93949 0.97994 1.02094 1.21096 0.93785 0.96843 0.96465 0.92320 0.92089 0.92300 0.91177 0.91146 0.91335 0.91345 0.76362 0.84175 0.84520 0.73533 0.76295 0.88658 0.96449 0.95064 0.92394 0.83906 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.14 -0.60 6.05 -26.73 -0.16 -0.76 16 3 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 4 N -0.73 -5.58 5.51 -61.32 -0.34 -5.92 16 5 C 0.56 6.10 7.76 -12.44 -0.10 6.00 16 6 O -0.54 -7.63 16.34 5.29 0.09 -7.54 16 7 C -0.16 -1.66 5.88 -104.95 -0.62 -2.28 16 8 C -0.04 -0.36 9.58 -39.23 -0.38 -0.73 16 9 C -0.15 -1.51 9.94 -39.44 -0.39 -1.91 16 10 C 0.18 2.12 6.27 -83.78 -0.53 1.60 16 11 N -0.65 -8.22 5.30 -10.29 -0.05 -8.28 16 12 C 0.51 7.99 7.61 -11.63 -0.09 7.90 16 13 O -0.50 -8.35 14.17 5.49 0.08 -8.27 16 14 C 0.49 9.33 7.85 -11.63 -0.09 9.24 16 15 O -0.53 -11.17 16.15 5.49 0.09 -11.09 16 16 N -0.67 -13.58 5.06 -55.39 -0.28 -13.86 16 17 C 0.26 6.34 2.56 -69.08 -0.18 6.16 16 18 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16 19 C -0.15 -3.52 9.26 37.16 0.34 -3.17 16 20 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 21 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 23 N -0.88 -23.89 11.32 55.43 0.63 -23.26 16 24 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C -0.13 -1.50 8.63 -39.44 -0.34 -1.84 16 29 C -0.06 -0.58 9.53 -39.22 -0.37 -0.95 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.40 2.12 6.49 -40.82 -0.27 1.85 16 38 H 0.14 1.34 7.64 -52.49 -0.40 0.94 16 39 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.43 4.71 8.29 -40.82 -0.34 4.37 16 41 H 0.40 7.60 8.01 -40.82 -0.33 7.28 16 42 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.14 1.76 6.43 -52.49 -0.34 1.42 16 47 H 0.13 0.80 6.39 -52.49 -0.34 0.46 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -31.32 399.51 -8.22 -39.54 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.48 Total: 10.18 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -2.94 Total: 7.41 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.05 Total: -51.32 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: 0.25 Total: -26.90 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.32 -8.22 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122822291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.350 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds