Wall clock time and date at job start Wed Apr 1 2020 04:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46975 * 2 1 4 4 N 1.46501 * 109.46665 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99522 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99995 * 0.02562 * 5 4 3 7 7 C 1.47603 * 119.99825 * 179.97438 * 5 4 3 8 8 C 1.39748 * 120.06993 * 180.02562 * 7 5 4 9 9 C 1.37660 * 119.93124 * 180.02562 * 8 7 5 10 10 C 1.39176 * 120.07209 * 359.97438 * 9 8 7 11 11 N 1.39272 * 119.93626 * 179.97438 * 10 9 8 12 12 C 1.34771 * 120.00136 * 146.53562 * 11 10 9 13 13 O 1.21363 * 120.00215 * 354.72239 * 12 11 10 14 14 C 1.49363 * 120.00040 * 174.72893 * 12 11 10 15 15 O 1.21356 * 119.99962 * 359.97438 * 14 12 11 16 16 N 1.34777 * 120.00391 * 180.02562 * 14 12 11 17 17 C 1.46494 * 120.00324 * 179.97438 * 16 14 12 18 18 H 1.08996 * 109.47505 * 325.00443 * 17 16 14 19 19 C 1.53005 * 109.47007 * 85.00103 * 17 16 14 20 20 C 1.50703 * 109.47410 * 205.00023 * 17 16 14 21 21 H 1.08003 * 119.99743 * 359.97438 * 20 17 16 22 22 C 1.37869 * 120.00072 * 180.02562 * 20 17 16 23 23 N 1.31514 * 120.00189 * 0.02562 * 22 20 17 24 24 Si 1.86807 * 120.00110 * 179.97438 * 22 20 17 25 25 H 1.48494 * 109.47491 * 270.00349 * 24 22 20 26 26 H 1.48503 * 109.46723 * 30.00258 * 24 22 20 27 27 H 1.48498 * 109.47132 * 149.99718 * 24 22 20 28 28 C 1.39183 * 120.13624 * 0.27713 * 10 9 8 29 29 C 1.37664 * 120.06232 * 359.44843 * 28 10 9 30 30 H 1.09000 * 109.47122 * 59.99746 * 1 2 3 31 31 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47041 * 299.99657 * 1 2 3 33 33 H 1.09004 * 109.46783 * 240.00052 * 2 1 3 34 34 H 1.08991 * 109.47273 * 120.00272 * 2 1 3 35 35 H 1.08997 * 109.46956 * 60.00291 * 3 2 1 36 36 H 1.09000 * 109.47403 * 300.00082 * 3 2 1 37 37 H 0.96994 * 120.00306 * 359.97438 * 4 3 2 38 38 H 1.07997 * 120.03499 * 0.02562 * 8 7 5 39 39 H 1.08003 * 119.96618 * 179.97438 * 9 8 7 40 40 H 0.96999 * 119.99737 * 326.53967 * 11 10 9 41 41 H 0.97000 * 119.99367 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.47306 * 179.97438 * 19 17 16 43 43 H 1.09000 * 109.47165 * 300.00199 * 19 17 16 44 44 H 1.09006 * 109.47224 * 59.99888 * 19 17 16 45 45 H 0.97003 * 120.00126 * 180.02562 * 23 22 20 46 46 H 1.07994 * 119.96287 * 179.72391 * 28 10 9 47 47 H 1.08000 * 120.02835 * 180.25331 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5709 3.6627 0.0011 7 6 5.6549 2.6097 -0.0003 8 6 6.3552 3.8191 0.0007 9 6 7.7317 3.8158 0.0001 10 6 8.4262 2.6097 -0.0009 11 7 9.8189 2.6096 -0.0020 12 6 10.4933 1.6357 0.6407 13 8 9.8909 0.8138 1.2998 14 6 11.9821 1.5679 0.5418 15 8 12.5845 2.3895 -0.1176 16 7 12.6565 0.5936 1.1840 17 6 14.1167 0.5268 1.0866 18 1 14.4295 0.8448 0.0921 19 6 14.7406 1.4485 2.1364 20 6 14.5720 -0.8895 1.3275 21 1 13.8462 -1.6625 1.5330 22 6 15.9150 -1.1983 1.2864 23 7 16.7989 -0.2568 1.0376 24 14 16.4795 -2.9537 1.5857 25 1 16.7322 -3.1521 3.0355 26 1 15.4250 -3.8965 1.1334 27 1 17.7297 -3.2080 0.8259 28 6 7.7318 1.4035 -0.0071 29 6 6.3552 1.4003 -0.0009 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9900 0.6025 -0.0006 38 1 5.8169 4.7554 0.0019 39 1 8.2735 4.7501 0.0005 40 1 10.3036 3.3106 -0.4653 41 1 12.1750 -0.0633 1.7108 42 1 15.8270 1.3985 2.0643 43 1 14.4113 2.4729 1.9623 44 1 14.4279 1.1305 3.1311 45 1 17.7439 -0.4741 1.0084 46 1 8.2735 0.4693 -0.0124 47 1 5.8169 0.4640 -0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122822291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:22 Heat of formation + Delta-G solvation = -109.666900 kcal Electronic energy + Delta-G solvation = -28742.908652 eV Core-core repulsion = 24503.473264 eV Total energy + Delta-G solvation = -4239.435388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21979 -41.17694 -40.15960 -38.97914 -37.07062 -36.82018 -36.01620 -34.34994 -33.71454 -32.04670 -31.32093 -30.93455 -27.57459 -27.36103 -26.29148 -24.19049 -24.05049 -22.63776 -22.49295 -21.49469 -21.22611 -20.19399 -19.11730 -18.55299 -18.16757 -17.49144 -17.32524 -16.94134 -16.90837 -16.76706 -16.02615 -15.96928 -15.70023 -15.46385 -15.16490 -15.10568 -14.79671 -14.47511 -14.42097 -13.91157 -13.84498 -13.74960 -13.71419 -13.38662 -13.08407 -12.93011 -12.90738 -12.85689 -12.69637 -12.35459 -12.30281 -12.13871 -12.02796 -11.75551 -11.59867 -11.15610 -11.13357 -10.72742 -10.61443 -10.20248 -10.08926 -9.99606 -9.35541 -8.20048 -6.37293 -0.46617 0.31117 0.36886 1.22765 1.46321 1.47478 1.57608 1.73234 2.12235 2.12891 2.38826 2.67481 2.79627 3.11124 3.43099 3.68123 3.73103 3.85727 3.93853 4.08122 4.19105 4.29813 4.35377 4.37847 4.67258 4.69982 4.74460 4.83090 4.88504 4.90447 4.99353 5.01510 5.09908 5.16384 5.18686 5.24819 5.27062 5.29810 5.30958 5.42919 5.46233 5.59299 5.72425 5.77893 5.93574 6.03693 6.45989 6.46661 6.64345 6.73302 7.05404 7.13165 7.35056 8.85969 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018277 B = 0.001726 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.619160 B =16219.244768 C =17550.011242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.116 3.884 4 N -0.716 5.716 5 C 0.560 3.440 6 O -0.580 6.580 7 C -0.164 4.164 8 C -0.042 4.042 9 C -0.143 4.143 10 C 0.161 3.839 11 N -0.636 5.636 12 C 0.521 3.479 13 O -0.510 6.510 14 C 0.495 3.505 15 O -0.556 6.556 16 N -0.668 5.668 17 C 0.267 3.733 18 H 0.017 0.983 19 C -0.136 4.136 20 C -0.552 4.552 21 H 0.071 0.929 22 C 0.020 3.980 23 N -0.912 5.912 24 Si 0.971 3.029 25 H -0.272 1.272 26 H -0.266 1.266 27 H -0.284 1.284 28 C -0.143 4.143 29 C -0.052 4.052 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.414 0.586 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.433 0.567 41 H 0.411 0.589 42 H 0.073 0.927 43 H 0.021 0.979 44 H 0.039 0.961 45 H 0.267 0.733 46 H 0.134 0.866 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.731 1.525 -2.453 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.007 4.007 4 N -0.368 5.368 5 C 0.349 3.651 6 O -0.461 6.461 7 C -0.168 4.168 8 C -0.061 4.061 9 C -0.163 4.163 10 C 0.067 3.933 11 N -0.283 5.283 12 C 0.304 3.696 13 O -0.384 6.384 14 C 0.275 3.725 15 O -0.436 6.436 16 N -0.318 5.318 17 C 0.165 3.835 18 H 0.035 0.965 19 C -0.195 4.195 20 C -0.590 4.590 21 H 0.090 0.910 22 C -0.180 4.180 23 N -0.550 5.550 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.190 1.190 27 H -0.210 1.210 28 C -0.163 4.163 29 C -0.071 4.071 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.252 0.748 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.273 0.727 41 H 0.247 0.753 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.152 0.848 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -27.895 2.219 -2.466 28.092 hybrid contribution 1.050 -0.870 0.109 1.368 sum -26.845 1.349 -2.357 26.982 Atomic orbital electron populations 1.21692 0.94118 1.02782 1.02264 1.21712 0.97295 0.93975 1.03738 1.21510 0.78513 0.98895 1.01792 1.45893 1.08016 1.08497 1.74402 1.18358 0.87454 0.83804 0.75481 1.90757 1.70695 1.32630 1.52046 1.19946 0.92342 0.95038 1.09466 1.21168 0.93056 0.98173 0.93742 1.21089 0.94076 0.97114 1.03985 1.18187 0.81718 0.95271 0.98167 1.43062 1.05112 1.28478 1.51656 1.20212 0.88239 0.81796 0.79397 1.90748 1.69753 1.39310 1.38600 1.20095 0.87937 0.83073 0.81417 1.90726 1.70211 1.40642 1.41977 1.46251 1.09626 1.28365 1.47551 1.18641 0.73729 0.95892 0.95288 0.96543 1.21930 1.03249 0.96073 0.98264 1.21485 0.93155 0.93560 1.50790 0.91040 1.25710 0.96441 1.01773 0.94112 1.70015 1.02246 1.34340 1.48420 0.85356 0.77673 0.79083 0.78311 1.19773 1.19044 1.21014 1.21188 0.94795 0.97576 1.02704 1.21312 0.93030 0.97810 0.94933 0.92425 0.91231 0.92504 0.90254 0.90386 0.92273 0.92128 0.74804 0.83755 0.82373 0.72694 0.75319 0.90856 0.96025 0.94153 0.92341 0.84799 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 71.98 0.71 -0.22 16 2 C -0.13 -0.85 6.05 30.60 0.19 -0.67 16 3 C 0.12 1.41 5.67 86.38 0.49 1.90 16 4 N -0.72 -9.60 5.51 -466.19 -2.57 -12.17 16 5 C 0.56 11.40 7.76 86.71 0.67 12.08 16 6 O -0.58 -16.10 16.34 -3.99 -0.07 -16.16 16 7 C -0.16 -3.08 5.88 -20.07 -0.12 -3.20 16 8 C -0.04 -0.79 9.58 22.50 0.22 -0.57 16 9 C -0.14 -2.54 9.94 22.36 0.22 -2.32 16 10 C 0.16 3.50 6.27 38.41 0.24 3.74 16 11 N -0.64 -15.27 5.30 -304.81 -1.62 -16.89 16 12 C 0.52 15.92 7.61 87.24 0.66 16.58 16 13 O -0.51 -16.47 14.17 -3.29 -0.05 -16.52 16 14 C 0.50 18.67 7.85 87.24 0.68 19.36 16 15 O -0.56 -23.52 16.15 -3.26 -0.05 -23.58 16 16 N -0.67 -27.35 5.06 -447.53 -2.27 -29.62 16 17 C 0.27 13.20 2.56 44.25 0.11 13.31 16 18 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16 19 C -0.14 -6.55 9.26 71.98 0.67 -5.88 16 20 C -0.55 -28.33 8.73 25.60 0.22 -28.11 16 21 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 22 C 0.02 1.06 5.30 84.65 0.45 1.51 16 23 N -0.91 -50.07 11.32 21.44 0.24 -49.83 16 24 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 28 C -0.14 -3.00 8.63 22.36 0.19 -2.81 16 29 C -0.05 -0.84 9.53 22.50 0.21 -0.63 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.41 3.22 6.49 -92.71 -0.60 2.62 16 38 H 0.14 2.60 7.64 -2.91 -0.02 2.57 16 39 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.43 9.09 8.29 -92.71 -0.77 8.32 16 41 H 0.41 15.37 8.01 -92.71 -0.74 14.63 16 42 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.13 3.11 6.43 -2.91 -0.02 3.09 16 47 H 0.16 1.46 6.39 -2.91 -0.02 1.44 16 Total: -1.00 -67.68 399.51 0.41 -67.26 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -1.08 Total: 30.55 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 5.83 Total: 24.07 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -6.21 Total: -108.51 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -0.16 Total: -56.26 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -67.68 0.41 -67.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122822291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.402 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds