Wall clock time and date at job start Wed Apr 1 2020 04:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47274 * 2 1 4 4 H 1.08996 * 109.47064 * 305.00175 * 3 2 1 5 5 C 1.50704 * 109.47034 * 185.00471 * 3 2 1 6 6 H 1.08003 * 119.99409 * 240.00155 * 5 3 2 7 7 C 1.37871 * 120.00426 * 59.99740 * 5 3 2 8 8 N 1.31515 * 119.99611 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00303 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46896 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47369 * 120.00227 * 9 7 5 12 12 H 1.48501 * 109.47207 * 240.00442 * 9 7 5 13 13 N 1.46495 * 109.46990 * 65.00147 * 3 2 1 14 14 C 1.34771 * 120.00553 * 274.99864 * 13 3 2 15 15 O 1.21552 * 119.99598 * 0.02562 * 14 13 3 16 16 C 1.47876 * 120.00342 * 180.02562 * 14 13 3 17 17 C 1.39490 * 120.07697 * 359.73005 * 16 14 13 18 18 C 1.38669 * 119.92032 * 179.72264 * 17 16 14 19 19 N 1.39950 * 119.96069 * 180.29450 * 18 17 16 20 20 C 1.34769 * 120.00234 * 35.36039 * 19 18 17 21 21 C 1.50706 * 120.00085 * 175.37430 * 20 19 18 22 22 O 1.21288 * 120.00375 * 355.38031 * 20 19 18 23 23 C 1.38840 * 120.07215 * 0.57097 * 18 17 16 24 24 C 1.38839 * 120.16235 * 359.68326 * 23 18 17 25 25 N 1.39954 * 119.96167 * 180.02562 * 24 23 18 26 26 C 1.34781 * 119.99956 * 144.90547 * 25 24 23 27 27 C 1.50695 * 120.00292 * 184.60959 * 26 25 24 28 28 O 1.21290 * 119.99879 * 4.61284 * 26 25 24 29 29 C 1.38661 * 120.07555 * 0.04111 * 24 23 18 30 30 H 1.09001 * 109.47665 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46947 * 299.99669 * 1 2 3 32 32 H 1.09000 * 109.47429 * 59.99744 * 1 2 3 33 33 H 1.09004 * 109.46947 * 240.00331 * 2 1 3 34 34 H 1.08999 * 109.47402 * 120.00811 * 2 1 3 35 35 H 0.97001 * 119.99547 * 179.97438 * 8 7 5 36 36 H 0.97014 * 119.99788 * 95.00259 * 13 3 2 37 37 H 1.07998 * 120.04366 * 359.97013 * 17 16 14 38 38 H 0.97009 * 119.99706 * 215.35719 * 19 18 17 39 39 H 1.09001 * 109.47023 * 90.00472 * 21 20 19 40 40 H 1.09004 * 109.46920 * 209.99944 * 21 20 19 41 41 H 1.09000 * 109.47191 * 330.00205 * 21 20 19 42 42 H 1.08005 * 119.91834 * 179.69778 * 23 18 17 43 43 H 0.96996 * 119.99910 * 324.90628 * 25 24 23 44 44 H 1.09002 * 109.47044 * 60.00197 * 27 26 25 45 45 H 1.08997 * 109.47428 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47245 * 300.00342 * 27 26 25 47 47 H 1.07999 * 120.04131 * 180.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1240 6 1 4.1472 1.8887 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4060 0.3374 -2.1733 9 14 6.0048 0.8811 -1.3820 10 1 6.5987 1.5461 -0.1944 11 1 6.4970 -0.5176 -1.4632 12 1 6.3988 1.6166 -2.6104 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6643 1.3671 15 8 -0.3413 2.6319 0.4325 16 6 0.0443 3.3259 2.6305 17 6 0.9320 3.3592 3.7059 18 6 0.5643 3.9855 4.8872 19 7 1.4566 4.0248 5.9646 20 6 2.7799 4.1456 5.7396 21 6 3.7311 4.2928 6.8993 22 8 3.2053 4.1359 4.6039 23 6 -0.6903 4.5686 5.0042 24 6 -1.5784 4.5328 3.9376 25 7 -2.8418 5.1223 4.0600 26 6 -3.4094 5.7263 2.9971 27 6 -4.7214 6.4508 3.1539 28 8 -2.8642 5.6866 1.9144 29 6 -1.2153 3.9132 2.7515 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8291 -0.0604 -2.9503 36 1 2.2721 2.1230 1.9978 37 1 1.9061 2.9013 3.6174 38 1 1.1226 3.9652 6.8735 39 1 4.0616 3.3066 7.2255 40 1 4.5946 4.8809 6.5885 41 1 3.2251 4.7971 7.7225 42 1 -0.9760 5.0515 5.9271 43 1 -3.3089 5.0963 4.9097 44 1 -4.6086 7.2530 3.8833 45 1 -5.0211 6.8716 2.1941 46 1 -5.4837 5.7517 3.4977 47 1 -1.9064 3.8860 1.9221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183928078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:59 Heat of formation + Delta-G solvation = -78.163539 kcal Electronic energy + Delta-G solvation = -30744.946650 eV Core-core repulsion = 26506.877350 eV Total energy + Delta-G solvation = -4238.069300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95734 -40.10449 -39.07264 -37.77120 -35.39514 -34.97323 -34.21537 -32.33516 -31.32363 -31.06942 -30.40815 -29.30040 -28.11782 -26.85681 -23.98636 -23.35401 -22.66329 -21.32301 -20.39857 -20.26850 -19.25135 -18.33423 -17.59478 -17.11360 -16.53000 -16.24636 -15.95727 -15.83446 -15.32790 -15.17729 -15.10063 -14.46693 -14.36429 -14.10489 -13.99190 -13.81266 -13.22210 -13.07294 -12.93230 -12.88619 -12.60100 -12.58001 -12.34996 -12.04480 -11.99970 -11.71125 -11.38881 -11.15449 -10.87459 -10.84733 -10.74584 -10.25010 -10.20789 -10.07292 -9.92479 -9.83164 -9.52512 -8.98701 -8.90931 -8.53989 -8.39418 -8.01790 -7.67829 -6.01731 -4.09907 0.95295 1.25502 2.29926 2.49174 2.65029 3.00712 3.31686 3.36810 3.39320 3.44075 4.14370 4.26816 4.45184 4.45587 4.53584 4.80780 4.86542 4.90830 5.01127 5.08057 5.18329 5.24445 5.29686 5.32444 5.44208 5.51364 5.56175 5.65327 6.05769 6.11290 6.24732 6.41819 6.49135 6.56910 6.61457 6.76981 6.97497 7.14446 7.15116 7.16301 7.31531 7.48218 7.57402 7.74399 7.85563 7.92066 7.93373 8.02704 8.28635 8.79754 8.90138 9.25106 9.56889 11.03844 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008942 B = 0.003561 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.672821 B = 7862.084493 C =10290.786831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.698 5.698 14 C 0.542 3.458 15 O -0.539 6.539 16 C -0.085 4.085 17 C -0.103 4.103 18 C 0.149 3.851 19 N -0.674 5.674 20 C 0.504 3.496 21 C -0.169 4.169 22 O -0.512 6.512 23 C -0.156 4.156 24 C 0.147 3.853 25 N -0.675 5.675 26 C 0.503 3.497 27 C -0.171 4.171 28 O -0.510 6.510 29 C -0.079 4.079 30 H 0.022 0.978 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.389 0.611 37 H 0.146 0.854 38 H 0.410 0.590 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.410 0.590 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 9.622 24.766 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.327 3.673 15 O -0.418 6.418 16 C -0.089 4.089 17 C -0.124 4.124 18 C 0.055 3.945 19 N -0.321 5.321 20 C 0.292 3.708 21 C -0.229 4.229 22 O -0.386 6.386 23 C -0.179 4.179 24 C 0.053 3.947 25 N -0.321 5.321 26 C 0.291 3.709 27 C -0.230 4.230 28 O -0.383 6.383 29 C -0.100 4.100 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.223 0.777 37 H 0.164 0.836 38 H 0.245 0.755 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.147 0.853 43 H 0.245 0.755 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.102 9.522 22.279 26.651 hybrid contribution 0.880 0.010 1.343 1.606 sum -10.222 9.533 23.622 27.447 Atomic orbital electron populations 1.21847 0.98358 0.97962 1.01339 1.21929 0.92618 0.99737 1.02259 1.18827 0.94304 0.89178 0.80927 0.93136 1.21302 0.90732 1.38539 1.06276 0.91943 1.24875 0.98552 0.94900 0.95382 1.69915 1.34916 1.37953 1.09323 0.86409 0.85046 0.77637 0.78145 1.19668 1.20954 1.20913 1.46465 1.14279 1.55195 1.18658 1.18029 0.83170 0.79479 0.86635 1.90751 1.51568 1.59827 1.39669 1.20168 0.94265 0.99595 0.94894 1.21523 1.00603 0.98416 0.91857 1.17203 0.89714 0.98506 0.89090 1.43540 1.06287 1.73614 1.08641 1.21070 0.82381 0.75630 0.91677 1.21884 0.99486 1.05095 0.96435 1.90836 1.76758 1.47111 1.23867 1.20527 0.93424 1.04109 0.99844 1.17235 0.85783 0.96842 0.94861 1.43479 1.17512 1.56335 1.14775 1.21069 0.87451 0.78594 0.83800 1.21912 0.93998 1.01270 1.05829 1.90852 1.63483 1.58344 1.25668 1.21410 0.96687 0.94249 0.97677 0.95889 0.94285 0.93072 0.88209 0.95067 0.92730 0.77689 0.83600 0.75462 0.88403 0.88361 0.90086 0.85321 0.75474 0.89199 0.88476 0.89111 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.51 37.15 0.32 -2.97 16 2 C -0.13 -3.27 5.45 -26.74 -0.15 -3.41 16 3 C 0.27 7.31 2.24 -69.08 -0.15 7.15 16 4 H 0.05 1.57 7.58 -51.93 -0.39 1.18 16 5 C -0.53 -14.97 8.73 -34.44 -0.30 -15.27 16 6 H 0.06 1.73 7.74 -52.48 -0.41 1.32 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -25.79 11.29 55.43 0.63 -25.16 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.70 -16.45 4.97 -55.87 -0.28 -16.73 16 14 C 0.54 12.50 6.34 -12.32 -0.08 12.43 16 15 O -0.54 -14.09 13.47 5.32 0.07 -14.02 16 16 C -0.08 -1.60 5.87 -105.02 -0.62 -2.22 16 17 C -0.10 -1.68 8.18 -38.96 -0.32 -2.00 16 18 C 0.15 1.86 6.29 -83.77 -0.53 1.33 16 19 N -0.67 -5.97 5.33 -9.91 -0.05 -6.03 16 20 C 0.50 5.43 7.78 -10.99 -0.09 5.34 16 21 C -0.17 -0.98 10.31 36.01 0.37 -0.60 16 22 O -0.51 -8.41 14.55 5.55 0.08 -8.33 16 23 C -0.16 -1.63 9.87 -39.14 -0.39 -2.02 16 24 C 0.15 1.88 6.29 -83.77 -0.53 1.36 16 25 N -0.67 -6.18 5.33 -9.91 -0.05 -6.23 16 26 C 0.50 5.55 7.78 -10.99 -0.09 5.47 16 27 C -0.17 -0.97 10.32 36.00 0.37 -0.59 16 28 O -0.51 -8.71 14.52 5.55 0.08 -8.63 16 29 C -0.08 -1.37 8.24 -38.96 -0.32 -1.69 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 32 H 0.05 1.30 7.84 -51.93 -0.41 0.89 16 33 H 0.10 2.80 5.95 -51.93 -0.31 2.49 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.39 8.46 6.57 -40.81 -0.27 8.19 16 37 H 0.15 2.56 4.57 -52.49 -0.24 2.32 16 38 H 0.41 1.82 8.82 -40.82 -0.36 1.46 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.41 1.87 8.82 -40.82 -0.36 1.51 16 44 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 46 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.15 3.07 5.80 -52.49 -0.30 2.76 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -39.37 388.63 -7.55 -46.92 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.28 Total: 11.62 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.58 Total: 4.04 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.24 Total: -54.15 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: 0.23 Total: -30.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.37 -7.55 -46.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183928078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.243 kcal (2) G-P(sol) polarization free energy of solvation -39.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds