Wall clock time and date at job start Wed Apr 1 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 H 1.08994 * 109.46947 * 55.00354 * 3 2 1 5 5 C 1.50701 * 109.46632 * 175.00442 * 3 2 1 6 6 H 1.07995 * 120.00190 * 120.00476 * 5 3 2 7 7 C 1.37880 * 119.99743 * 299.99750 * 5 3 2 8 8 N 1.31513 * 120.00403 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99777 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47179 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47075 * 120.00174 * 9 7 5 12 12 H 1.48498 * 109.47228 * 240.00146 * 9 7 5 13 13 O 1.45192 * 109.47032 * 294.99951 * 3 2 1 14 14 C 1.34238 * 116.99922 * 90.00613 * 13 3 2 15 15 O 1.20821 * 119.99563 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99926 * 179.97438 * 14 13 3 17 17 C 1.50705 * 109.47044 * 179.97438 * 16 14 13 18 18 C 1.38386 * 120.32025 * 269.98339 * 17 16 14 19 19 C 1.50695 * 119.26168 * 0.02562 * 18 17 16 20 20 N 1.31870 * 121.47712 * 180.02562 * 18 17 16 21 21 C 1.32439 * 121.70328 * 359.97438 * 20 18 17 22 22 C 1.40637 * 119.90577 * 0.02562 * 21 20 18 23 23 C 1.47230 * 106.69077 * 180.02562 * 22 21 20 24 24 O 1.21599 * 126.49181 * 180.02562 * 23 22 21 25 25 N 1.34888 * 107.01645 * 359.76398 * 23 22 21 26 26 H 0.96994 * 125.31993 * 180.21762 * 25 23 22 27 27 N 1.38128 * 132.80259 * 179.97438 * 21 20 18 28 28 C 1.46499 * 125.18375 * 359.96905 * 27 21 20 29 29 C 1.38529 * 120.31725 * 89.99993 * 17 16 14 30 30 C 1.50704 * 120.95101 * 359.95957 * 29 17 16 31 31 H 1.09005 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46936 * 299.99600 * 1 2 3 33 33 H 1.08994 * 109.47526 * 59.99519 * 1 2 3 34 34 H 1.08999 * 109.46882 * 239.99960 * 2 1 3 35 35 H 1.09002 * 109.47211 * 120.00441 * 2 1 3 36 36 H 0.96994 * 120.00324 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47286 * 59.99844 * 16 14 13 38 38 H 1.08997 * 109.47638 * 299.99826 * 16 14 13 39 39 H 1.08997 * 109.47157 * 89.99972 * 19 18 17 40 40 H 1.08998 * 109.47388 * 210.00648 * 19 18 17 41 41 H 1.09007 * 109.47098 * 330.00464 * 19 18 17 42 42 H 1.09002 * 109.47391 * 89.99523 * 28 27 21 43 43 H 1.09001 * 109.46813 * 329.99579 * 28 27 21 44 44 H 1.09004 * 109.47041 * 209.99706 * 28 27 21 45 45 H 1.09002 * 109.46764 * 270.01985 * 30 29 17 46 46 H 1.08995 * 109.47263 * 30.01871 * 30 29 17 47 47 H 1.09007 * 109.46651 * 150.02288 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8811 1.3816 10 1 6.5987 1.5472 0.1946 11 1 6.3991 1.6166 2.6101 12 1 6.4971 -0.5176 1.4627 13 8 1.6558 2.0916 -1.2406 14 6 0.4726 2.7255 -1.2559 15 8 -0.2192 2.7370 -0.2654 16 6 0.0073 3.4226 -2.5083 17 6 -1.3409 4.0496 -2.2628 18 6 -2.4995 3.3347 -2.5109 19 6 -2.3974 1.9230 -3.0283 20 7 -3.6909 3.8610 -2.3047 21 6 -3.8368 5.0965 -1.8506 22 6 -2.7025 5.8814 -1.5766 23 6 -3.1949 7.1823 -1.0939 24 8 -2.5156 8.1320 -0.7545 25 7 -4.5425 7.1230 -1.1050 26 1 -5.1376 7.8413 -0.8391 27 7 -4.9475 5.8637 -1.5576 28 6 -6.3380 5.4262 -1.7034 29 6 -1.4323 5.3474 -1.7869 30 6 -0.1939 6.1583 -1.5041 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8294 -0.0612 2.9497 37 1 -0.0713 2.6985 -3.3192 38 1 0.7243 4.1969 -2.7809 39 1 -2.3616 1.2297 -2.1880 40 1 -3.2661 1.6992 -3.6474 41 1 -1.4904 1.8190 -3.6239 42 1 -6.6727 4.9638 -0.7749 43 1 -6.4078 4.7024 -2.5155 44 1 -6.9680 6.2868 -1.9285 45 1 0.1156 6.0004 -0.4709 46 1 0.6062 5.8456 -2.1749 47 1 -0.4080 7.2154 -1.6617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187894494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:31 Heat of formation + Delta-G solvation = -28.810705 kcal Electronic energy + Delta-G solvation = -31364.062815 eV Core-core repulsion = 27128.133615 eV Total energy + Delta-G solvation = -4235.929200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92184 -39.93488 -38.92446 -37.53358 -35.81772 -34.37261 -33.49436 -33.19349 -32.26322 -31.35912 -29.29860 -28.69570 -27.43738 -26.97188 -25.70571 -23.30474 -22.73682 -22.28290 -20.64587 -20.06081 -19.39994 -18.44222 -17.70629 -17.05029 -16.60851 -16.39517 -16.36459 -15.90858 -15.29727 -15.26013 -14.90868 -14.47418 -14.27622 -14.10679 -13.86886 -13.49045 -13.16361 -13.11870 -12.92615 -12.80077 -12.70119 -12.43102 -12.35239 -12.18069 -11.79706 -11.50886 -11.43109 -11.33989 -11.27271 -11.09408 -10.95013 -10.63810 -10.51814 -10.25888 -9.79612 -9.72433 -9.48935 -9.39461 -9.33824 -9.25014 -8.77901 -8.44364 -7.82196 -6.17401 -4.24260 0.66847 1.17691 1.20015 2.65011 3.05260 3.22822 3.24279 3.31453 3.35875 3.52109 3.92983 4.02234 4.17378 4.36456 4.49701 4.72508 4.77238 4.87509 4.91255 5.10021 5.13050 5.14812 5.27499 5.34651 5.41837 5.50654 5.61835 5.73266 5.80742 5.83114 5.91050 6.01488 6.18107 6.23881 6.30629 6.33180 6.43875 6.48022 6.86934 6.88116 6.92877 6.98690 7.18353 7.28830 7.63733 7.75913 7.77342 7.92865 7.98284 8.18018 8.67492 8.92535 9.41209 10.89292 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.002820 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.895038 B = 9926.011946 C =10725.774257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.357 6.357 14 C 0.452 3.548 15 O -0.509 6.509 16 C -0.072 4.072 17 C -0.178 4.178 18 C 0.234 3.766 19 C -0.115 4.115 20 N -0.526 5.526 21 C 0.410 3.590 22 C -0.292 4.292 23 C 0.569 3.431 24 O -0.518 6.518 25 N -0.508 5.508 26 H 0.439 0.561 27 N -0.403 5.403 28 C 0.114 3.886 29 C 0.095 3.905 30 C -0.132 4.132 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.108 0.892 36 H 0.265 0.735 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.706 8.097 -11.761 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.273 6.273 14 C 0.294 3.706 15 O -0.398 6.398 16 C -0.110 4.110 17 C -0.183 4.183 18 C 0.094 3.906 19 C -0.172 4.172 20 N -0.245 5.245 21 C 0.172 3.828 22 C -0.303 4.303 23 C 0.359 3.641 24 O -0.393 6.393 25 N -0.259 5.259 26 H 0.286 0.714 27 N -0.208 5.208 28 C -0.027 4.027 29 C 0.086 3.914 30 C -0.188 4.188 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.469 8.098 -11.203 23.069 hybrid contribution 0.925 0.692 0.766 1.386 sum -17.544 8.790 -10.437 22.226 Atomic orbital electron populations 1.21860 0.98394 0.98891 1.00754 1.22014 0.92611 0.99411 1.03319 1.20651 0.94933 0.88723 0.78736 0.93584 1.21088 0.89758 1.38771 1.06180 0.91284 1.24885 0.99163 0.94823 0.95112 1.69895 1.35260 1.37932 1.09470 0.86256 0.84031 0.77853 0.78224 1.19458 1.20810 1.20750 1.86468 1.34214 1.62536 1.44096 1.23071 0.80947 0.77247 0.89353 1.90628 1.55432 1.58050 1.35681 1.20202 0.93736 1.00939 0.96146 1.19667 0.95316 0.94493 1.08794 1.20877 0.85751 0.95223 0.88760 1.20968 1.03740 0.90273 1.02240 1.66426 1.27130 1.09717 1.21219 1.17988 0.84480 0.89048 0.91293 1.20408 0.94294 0.97905 1.17646 1.17644 0.80335 0.87634 0.78508 1.90874 1.58963 1.38465 1.51017 1.45328 1.07610 1.05646 1.67292 0.71407 1.45307 1.04177 1.03386 1.67911 1.21928 0.76369 1.00836 1.03560 1.19560 0.93284 0.92162 0.86345 1.21049 0.93903 1.00188 1.03654 0.94905 0.92940 0.94842 0.93974 0.87443 0.92484 0.86920 0.87010 0.89065 0.89965 0.89614 0.91476 0.88406 0.90249 0.89143 0.90199 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.57 37.16 0.32 -2.68 16 2 C -0.14 -3.28 5.49 -26.73 -0.15 -3.42 16 3 C 0.22 5.75 2.25 -27.88 -0.06 5.68 16 4 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 5 C -0.52 -14.29 8.90 -34.44 -0.31 -14.59 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.91 20.88 29.54 -169.99 -5.02 15.85 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 O -0.36 -8.03 9.81 -39.28 -0.39 -8.41 16 14 C 0.45 8.75 6.41 36.00 0.23 8.98 16 15 O -0.51 -11.29 13.17 -18.75 -0.25 -11.54 16 16 C -0.07 -1.00 5.16 -29.03 -0.15 -1.15 16 17 C -0.18 -2.55 4.39 -104.46 -0.46 -3.01 16 18 C 0.23 3.19 6.78 -82.52 -0.56 2.63 16 19 C -0.12 -1.24 9.75 36.00 0.35 -0.89 16 20 N -0.53 -7.27 10.29 -8.43 -0.09 -7.35 16 21 C 0.41 5.60 7.95 -155.26 -1.23 4.36 16 22 C -0.29 -4.37 6.16 -104.91 -0.65 -5.02 16 23 C 0.57 8.13 8.54 -12.56 -0.11 8.03 16 24 O -0.52 -8.67 16.96 5.28 0.09 -8.58 16 25 N -0.51 -5.20 7.10 30.40 0.22 -4.99 16 26 H 0.44 2.88 8.96 -182.82 -1.64 1.24 16 27 N -0.40 -4.18 4.07 -67.01 -0.27 -4.45 16 28 C 0.11 0.66 11.43 59.85 0.68 1.34 16 29 C 0.09 1.42 5.94 -104.09 -0.62 0.80 16 30 C -0.13 -1.82 9.54 36.01 0.34 -1.47 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.19 7.80 -51.93 -0.40 0.78 16 33 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.11 1.23 5.92 -51.93 -0.31 0.92 16 38 H 0.11 1.33 6.08 -51.93 -0.32 1.01 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.78 5.90 -51.93 -0.31 0.47 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.08 0.93 6.09 -51.93 -0.32 0.61 16 47 H 0.08 1.14 7.09 -51.93 -0.37 0.77 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -34.78 384.35 -9.32 -44.11 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.58 Total: 2.65 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.46 Total: 1.19 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.48 Total: -41.05 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.54 Total: -28.53 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.78 -9.32 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187894494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.295 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds