Wall clock time and date at job start Wed Apr 1 2020 04:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 H 1.08994 * 109.46947 * 55.00354 * 3 2 1 5 5 C 1.50701 * 109.46632 * 175.00442 * 3 2 1 6 6 H 1.07995 * 120.00190 * 120.00476 * 5 3 2 7 7 C 1.37880 * 119.99743 * 299.99750 * 5 3 2 8 8 N 1.31513 * 120.00403 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99777 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47179 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47075 * 120.00174 * 9 7 5 12 12 H 1.48498 * 109.47228 * 240.00146 * 9 7 5 13 13 O 1.45192 * 109.47032 * 294.99951 * 3 2 1 14 14 C 1.34238 * 116.99922 * 90.00613 * 13 3 2 15 15 O 1.20821 * 119.99563 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99926 * 179.97438 * 14 13 3 17 17 C 1.50705 * 109.47044 * 179.97438 * 16 14 13 18 18 C 1.38386 * 120.32025 * 269.98339 * 17 16 14 19 19 C 1.50695 * 119.26168 * 0.02562 * 18 17 16 20 20 N 1.31870 * 121.47712 * 180.02562 * 18 17 16 21 21 C 1.32439 * 121.70328 * 359.97438 * 20 18 17 22 22 C 1.40637 * 119.90577 * 0.02562 * 21 20 18 23 23 C 1.47230 * 106.69077 * 180.02562 * 22 21 20 24 24 O 1.21599 * 126.49181 * 180.02562 * 23 22 21 25 25 N 1.34888 * 107.01645 * 359.76398 * 23 22 21 26 26 H 0.96994 * 125.31993 * 180.21762 * 25 23 22 27 27 N 1.38128 * 132.80259 * 179.97438 * 21 20 18 28 28 C 1.46499 * 125.18375 * 359.96905 * 27 21 20 29 29 C 1.38529 * 120.31725 * 89.99993 * 17 16 14 30 30 C 1.50704 * 120.95101 * 359.95957 * 29 17 16 31 31 H 1.09005 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46936 * 299.99600 * 1 2 3 33 33 H 1.08994 * 109.47526 * 59.99519 * 1 2 3 34 34 H 1.08999 * 109.46882 * 239.99960 * 2 1 3 35 35 H 1.09002 * 109.47211 * 120.00441 * 2 1 3 36 36 H 0.96994 * 120.00324 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47286 * 59.99844 * 16 14 13 38 38 H 1.08997 * 109.47638 * 299.99826 * 16 14 13 39 39 H 1.08997 * 109.47157 * 89.99972 * 19 18 17 40 40 H 1.08998 * 109.47388 * 210.00648 * 19 18 17 41 41 H 1.09007 * 109.47098 * 330.00464 * 19 18 17 42 42 H 1.09002 * 109.47391 * 89.99523 * 28 27 21 43 43 H 1.09001 * 109.46813 * 329.99579 * 28 27 21 44 44 H 1.09004 * 109.47041 * 209.99706 * 28 27 21 45 45 H 1.09002 * 109.46764 * 270.01985 * 30 29 17 46 46 H 1.08995 * 109.47263 * 30.01871 * 30 29 17 47 47 H 1.09007 * 109.46651 * 150.02288 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8811 1.3816 10 1 6.5987 1.5472 0.1946 11 1 6.3991 1.6166 2.6101 12 1 6.4971 -0.5176 1.4627 13 8 1.6558 2.0916 -1.2406 14 6 0.4726 2.7255 -1.2559 15 8 -0.2192 2.7370 -0.2654 16 6 0.0073 3.4226 -2.5083 17 6 -1.3409 4.0496 -2.2628 18 6 -2.4995 3.3347 -2.5109 19 6 -2.3974 1.9230 -3.0283 20 7 -3.6909 3.8610 -2.3047 21 6 -3.8368 5.0965 -1.8506 22 6 -2.7025 5.8814 -1.5766 23 6 -3.1949 7.1823 -1.0939 24 8 -2.5156 8.1320 -0.7545 25 7 -4.5425 7.1230 -1.1050 26 1 -5.1376 7.8413 -0.8391 27 7 -4.9475 5.8637 -1.5576 28 6 -6.3380 5.4262 -1.7034 29 6 -1.4323 5.3474 -1.7869 30 6 -0.1939 6.1583 -1.5041 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8294 -0.0612 2.9497 37 1 -0.0713 2.6985 -3.3192 38 1 0.7243 4.1969 -2.7809 39 1 -2.3616 1.2297 -2.1880 40 1 -3.2661 1.6992 -3.6474 41 1 -1.4904 1.8190 -3.6239 42 1 -6.6727 4.9638 -0.7749 43 1 -6.4078 4.7024 -2.5155 44 1 -6.9680 6.2868 -1.9285 45 1 0.1156 6.0004 -0.4709 46 1 0.6062 5.8456 -2.1749 47 1 -0.4080 7.2154 -1.6617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187894494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:30 Heat of formation + Delta-G solvation = -50.794629 kcal Electronic energy + Delta-G solvation = -31365.016110 eV Core-core repulsion = 27128.133615 eV Total energy + Delta-G solvation = -4236.882495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.92783 -41.40616 -40.15286 -38.60196 -37.52929 -35.49993 -35.41082 -34.24718 -33.30723 -33.05533 -30.43873 -29.65163 -29.21401 -28.11645 -26.62761 -25.18127 -23.75270 -23.52451 -22.21387 -21.13285 -21.08176 -19.37896 -18.93332 -18.61895 -18.39416 -17.51968 -17.41028 -17.07106 -16.90076 -16.71593 -16.23961 -15.94041 -15.25349 -15.05634 -15.00037 -14.77914 -14.68881 -14.36866 -14.11421 -14.08363 -13.75490 -13.43598 -13.34814 -13.29557 -13.26139 -13.15840 -13.04509 -12.83492 -12.77978 -12.48143 -12.38345 -12.30479 -12.10133 -11.68371 -11.62274 -11.38208 -11.18656 -10.74833 -10.68854 -10.47764 -10.45836 -10.24642 -8.78462 -8.23805 -6.39810 -0.38717 0.10731 0.35219 1.43467 1.43901 1.51487 1.56926 1.58241 2.10504 2.31507 2.44180 2.71536 3.06125 3.12900 3.24723 3.48350 3.70703 3.84916 4.02463 4.15354 4.26451 4.35184 4.39942 4.43688 4.44338 4.44676 4.47458 4.55529 4.65360 4.67833 4.72406 4.76273 4.81408 4.91939 4.93655 5.11711 5.16015 5.19066 5.25858 5.29703 5.44296 5.49780 5.57461 5.74823 5.92915 6.03266 6.06560 6.23443 6.67046 6.73641 6.97744 7.12332 7.33472 8.82678 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.002820 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.895038 B = 9926.011946 C =10725.774257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.002 0.998 5 C -0.545 4.545 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.977 3.023 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.272 1.272 13 O -0.362 6.362 14 C 0.449 3.551 15 O -0.540 6.540 16 C -0.060 4.060 17 C -0.192 4.192 18 C 0.231 3.769 19 C -0.115 4.115 20 N -0.529 5.529 21 C 0.401 3.599 22 C -0.324 4.324 23 C 0.559 3.441 24 O -0.554 6.554 25 N -0.487 5.487 26 H 0.457 0.543 27 N -0.393 5.393 28 C 0.104 3.896 29 C 0.080 3.920 30 C -0.128 4.128 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.268 0.732 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.735 7.639 -13.735 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.583 4.583 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.197 1.197 13 O -0.279 6.279 14 C 0.293 3.707 15 O -0.431 6.431 16 C -0.097 4.097 17 C -0.197 4.197 18 C 0.090 3.910 19 C -0.171 4.171 20 N -0.248 5.248 21 C 0.162 3.838 22 C -0.334 4.334 23 C 0.349 3.651 24 O -0.433 6.433 25 N -0.239 5.239 26 H 0.308 0.692 27 N -0.196 5.196 28 C -0.034 4.034 29 C 0.072 3.928 30 C -0.184 4.184 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.598 7.666 -13.188 24.834 hybrid contribution 1.067 0.867 1.387 1.953 sum -18.530 8.533 -11.800 23.567 Atomic orbital electron populations 1.21707 0.96126 1.00471 1.00236 1.21848 0.94589 0.98026 1.02278 1.20285 0.94239 0.89306 0.78794 0.98021 1.21395 0.90793 1.39421 1.06682 0.91479 1.25776 1.03959 0.94105 0.94531 1.70026 1.37224 1.38229 1.09890 0.85218 0.78162 0.78241 0.78302 1.18587 1.20587 1.19750 1.86455 1.36120 1.63151 1.42166 1.24167 0.79418 0.76253 0.90854 1.90623 1.55966 1.59007 1.37468 1.20311 0.93825 1.01769 0.93840 1.19740 0.95766 0.94383 1.09781 1.21387 0.85523 0.96239 0.87848 1.21074 1.05802 0.88042 1.02221 1.66555 1.27151 1.09550 1.21568 1.18253 0.85328 0.89162 0.91103 1.20668 0.95074 0.98730 1.18925 1.17670 0.81478 0.87229 0.78750 1.90842 1.60135 1.39402 1.52885 1.45178 1.06846 1.06158 1.65695 0.69211 1.45744 1.05000 1.02602 1.66253 1.22351 0.74077 1.02615 1.04388 1.19785 0.93651 0.92825 0.86531 1.21004 0.94467 1.00176 1.02725 0.92157 0.95361 0.93409 0.93190 0.90096 0.92245 0.83244 0.84849 0.90156 0.87920 0.87607 0.90512 0.87770 0.86758 0.91354 0.88157 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.57 71.98 0.62 -4.78 16 2 C -0.13 -6.34 5.49 30.60 0.17 -6.17 16 3 C 0.23 12.08 2.25 29.85 0.07 12.15 16 4 H 0.00 0.12 7.16 -2.39 -0.02 0.10 16 5 C -0.55 -30.51 8.90 25.60 0.23 -30.28 16 6 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.87 5.29 84.66 0.45 1.31 16 8 N -0.92 -52.49 11.29 21.45 0.24 -52.25 16 9 Si 0.98 42.86 29.54 68.60 2.03 44.88 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 O -0.36 -16.35 9.81 -51.49 -0.50 -16.86 16 14 C 0.45 17.30 6.41 71.23 0.46 17.76 16 15 O -0.54 -24.54 13.17 21.98 0.29 -24.25 16 16 C -0.06 -1.56 5.16 29.10 0.15 -1.41 16 17 C -0.19 -5.32 4.39 -19.76 -0.09 -5.40 16 18 C 0.23 5.94 6.78 42.59 0.29 6.23 16 19 C -0.11 -2.18 9.75 71.23 0.69 -1.48 16 20 N -0.53 -13.84 10.29 -180.59 -1.86 -15.70 16 21 C 0.40 10.56 7.95 133.72 1.06 11.62 16 22 C -0.32 -9.73 6.16 -20.05 -0.12 -9.85 16 23 C 0.56 16.13 8.54 86.59 0.74 16.87 16 24 O -0.55 -19.16 16.96 -4.03 -0.07 -19.23 16 25 N -0.49 -9.40 7.10 -175.91 -1.25 -10.65 16 26 H 0.46 5.21 8.96 -213.51 -1.91 3.30 16 27 N -0.39 -7.42 4.07 -365.92 -1.49 -8.91 16 28 C 0.10 0.90 11.43 127.77 1.46 2.36 16 29 C 0.08 2.41 5.94 -19.52 -0.12 2.30 16 30 C -0.13 -3.62 9.54 71.24 0.68 -2.94 16 31 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.03 1.29 7.80 -2.38 -0.02 1.27 16 33 H 0.05 1.84 6.06 -2.39 -0.01 1.82 16 34 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 4.41 5.95 -2.39 -0.01 4.40 16 36 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.15 2.74 5.92 -2.39 -0.01 2.73 16 38 H 0.13 2.89 6.08 -2.39 -0.01 2.87 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 1.54 5.90 -2.38 -0.01 1.53 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.10 2.30 6.09 -2.39 -0.01 2.29 16 47 H 0.08 2.32 7.09 -2.38 -0.02 2.30 16 Total: -1.00 -79.03 384.35 3.24 -75.79 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.88 Total: 18.89 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.73 Total: 8.29 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -4.35 Total: -87.51 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -0.28 Total: -60.34 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -79.03 3.24 -75.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187894494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.992 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds