Wall clock time and date at job start Wed Apr 1 2020 04:12:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53005 * 109.46719 * 2 1
4 4 H 1.08997 * 109.47161 * 54.99931 * 3 2 1
5 5 C 1.50706 * 109.46835 * 175.00028 * 3 2 1
6 6 H 1.07998 * 119.99604 * 119.99819 * 5 3 2
7 7 C 1.37872 * 119.99932 * 299.99681 * 5 3 2
8 8 N 1.31517 * 120.00240 * 0.02562 * 7 5 3
9 9 Si 1.86798 * 120.00146 * 179.97438 * 7 5 3
10 10 H 1.48501 * 109.46790 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.47057 * 119.99488 * 9 7 5
12 12 H 1.48496 * 109.47680 * 240.00042 * 9 7 5
13 13 O 1.45196 * 109.46901 * 294.99755 * 3 2 1
14 14 C 1.34234 * 116.99938 * 90.00275 * 13 3 2
15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 3
16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 3
17 17 S 1.81394 * 109.47177 * 180.02562 * 16 14 13
18 18 O 1.42107 * 110.54270 * 291.62277 * 17 16 14
19 19 O 1.42101 * 110.54260 * 68.37376 * 17 16 14
20 20 N 1.65600 * 104.45151 * 179.97438 * 17 16 14
21 21 C 1.46505 * 119.99816 * 64.99584 * 20 17 16
22 22 C 1.52998 * 109.47172 * 265.00412 * 21 20 17
23 23 C 1.53005 * 109.47291 * 299.99746 * 22 21 20
24 24 C 1.53002 * 109.47061 * 300.00419 * 23 22 21
25 25 C 1.53000 * 109.46924 * 179.97438 * 24 23 22
26 26 C 1.53005 * 109.47119 * 59.99674 * 24 23 22
27 27 C 1.53000 * 109.47242 * 299.99829 * 26 24 23
28 28 H 1.09004 * 109.47094 * 300.00062 * 1 2 3
29 29 H 1.08994 * 109.47228 * 60.00506 * 1 2 3
30 30 H 1.09006 * 109.46744 * 180.02562 * 1 2 3
31 31 H 1.08992 * 109.47481 * 239.99877 * 2 1 3
32 32 H 1.09003 * 109.46982 * 119.99347 * 2 1 3
33 33 H 0.96995 * 120.00188 * 179.97438 * 8 7 5
34 34 H 1.09004 * 109.46932 * 300.00373 * 16 14 13
35 35 H 1.08997 * 109.47392 * 59.99712 * 16 14 13
36 36 H 0.96993 * 120.00321 * 245.00412 * 20 17 16
37 37 H 1.09002 * 109.46823 * 25.00177 * 21 20 17
38 38 H 1.08998 * 109.47355 * 60.00008 * 22 21 20
39 39 H 1.09005 * 109.46878 * 180.02562 * 22 21 20
40 40 H 1.08988 * 109.47233 * 180.02562 * 23 22 21
41 41 H 1.08998 * 109.46452 * 59.99813 * 23 22 21
42 42 H 1.08999 * 109.47239 * 299.99993 * 24 23 22
43 43 H 1.08998 * 109.46768 * 299.99503 * 25 24 23
44 44 H 1.08994 * 109.47235 * 60.00364 * 25 24 23
45 45 H 1.08998 * 109.46997 * 179.97438 * 25 24 23
46 46 H 1.08998 * 109.47064 * 179.97438 * 26 24 23
47 47 H 1.08999 * 109.46804 * 60.00053 * 26 24 23
48 48 H 1.09006 * 109.47081 * 300.00438 * 27 26 24
49 49 H 1.09002 * 109.46983 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6053 1.9816 0.8418
5 6 3.5419 1.4444 0.1238
6 1 4.1471 1.8890 -0.6523
7 6 4.1433 0.8786 1.2280
8 7 3.4062 0.3368 2.1729
9 14 6.0050 0.8802 1.3812
10 1 6.5987 1.5454 0.1936
11 1 6.3999 1.6160 2.6091
12 1 6.4962 -0.5188 1.4628
13 8 1.6558 2.0916 -1.2407
14 6 0.4726 2.7254 -1.2560
15 8 -0.2189 2.7377 -0.2653
16 6 0.0073 3.4224 -2.5085
17 16 -1.6149 4.1783 -2.2126
18 8 -2.6087 3.1765 -2.0447
19 8 -1.5019 5.2590 -1.2968
20 7 -2.0023 4.9016 -3.6511
21 6 -2.2251 4.0834 -4.8457
22 6 -0.9297 3.9998 -5.6555
23 6 -0.4982 5.4068 -6.0742
24 6 -1.5949 6.0429 -6.9307
25 6 -1.1636 7.4500 -7.3488
26 6 -2.8903 6.1265 -6.1208
27 6 -3.3218 4.7195 -5.7022
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8934 -0.5138 -0.8899
32 1 1.8934 -0.5137 0.8901
33 1 3.8293 -0.0616 2.9495
34 1 0.7244 4.1968 -2.7810
35 1 -0.0713 2.6984 -3.3194
36 1 -2.0816 5.8669 -3.7027
37 1 -2.5325 3.0811 -4.5474
38 1 -0.1484 3.5466 -5.0453
39 1 -1.0956 3.3914 -6.5446
40 1 0.4244 5.3471 -6.6514
41 1 -0.3324 6.0154 -5.1853
42 1 -1.7608 5.4341 -7.8195
43 1 -0.9982 8.0585 -6.4598
44 1 -0.2407 7.3908 -7.9257
45 1 -1.9447 7.9030 -7.9594
46 1 -3.6715 6.5800 -6.7308
47 1 -2.7245 6.7352 -5.2320
48 1 -3.4876 4.1108 -6.5911
49 1 -4.2445 4.7792 -5.1249
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000187953346.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:38
Heat of formation + Delta-G solvation = -187.352810 kcal
Electronic energy + Delta-G solvation = -30177.458942 eV
Core-core repulsion = 26037.806040 eV
Total energy + Delta-G solvation = -4139.652902 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.165 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-39.91757 -39.69857 -37.08661 -36.19018 -35.88894 -34.79569 -33.64193 -31.58753
-31.28049 -30.86800 -30.36523 -27.27145 -26.44445 -23.40155 -23.05576 -21.72944
-21.51637 -20.34414 -19.71284 -19.09768 -18.14793 -17.08974 -16.99628 -16.48549
-16.31469 -15.88582 -15.37056 -15.25991 -15.09152 -14.71754 -14.49780 -14.37153
-13.92292 -13.60837 -13.37915 -12.95399 -12.89241 -12.64779 -12.40715 -12.20737
-12.11533 -12.00823 -11.97935 -11.96492 -11.60971 -11.58018 -11.49433 -11.42012
-11.31737 -11.17297 -11.01537 -10.87159 -10.71787 -10.64539 -10.46015 -10.37698
-10.13029 -9.80900 -9.68958 -9.50094 -8.90526 -8.52586 -6.24264 -4.32303
0.08099 2.58689 2.61187 3.16840 3.20375 3.28224 3.33999 3.84913
4.11092 4.24006 4.26970 4.31883 4.34007 4.66576 4.72750 4.76571
4.91487 4.97168 5.03587 5.07846 5.11740 5.14911 5.22229 5.28524
5.34397 5.42273 5.47149 5.65352 5.67982 5.70484 5.75750 5.86399
5.93666 5.98081 6.11093 6.19710 6.26083 6.39595 6.74352 6.77063
6.89281 7.08731 7.12944 7.52196 7.65107 7.78309 8.06089 8.34246
8.76332 9.32884 10.82572
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.017332 B = 0.002748 C = 0.002545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.160328 B =10185.641104 C =10998.645781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.137 4.137
3 C 0.217 3.783
4 H 0.053 0.947
5 C -0.524 4.524
6 H 0.070 0.930
7 C 0.063 3.937
8 N -0.886 5.886
9 Si 0.913 3.087
10 H -0.270 1.270
11 H -0.281 1.281
12 H -0.281 1.281
13 O -0.340 6.340
14 C 0.484 3.516
15 O -0.512 6.512
16 C -0.651 4.651
17 S 2.642 3.358
18 O -0.936 6.936
19 O -0.941 6.941
20 N -1.113 6.113
21 C 0.142 3.858
22 C -0.149 4.149
23 C -0.116 4.116
24 C -0.093 4.093
25 C -0.149 4.149
26 C -0.117 4.117
27 C -0.120 4.120
28 H 0.056 0.944
29 H 0.031 0.969
30 H 0.037 0.963
31 H 0.043 0.957
32 H 0.112 0.888
33 H 0.267 0.733
34 H 0.166 0.834
35 H 0.162 0.838
36 H 0.417 0.583
37 H 0.096 0.904
38 H 0.070 0.930
39 H 0.080 0.920
40 H 0.065 0.935
41 H 0.066 0.934
42 H 0.071 0.929
43 H 0.055 0.945
44 H 0.054 0.946
45 H 0.053 0.947
46 H 0.065 0.935
47 H 0.063 0.937
48 H 0.077 0.923
49 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.770 9.960 -20.456 25.172
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.175 4.175
3 C 0.165 3.835
4 H 0.070 0.930
5 C -0.562 4.562
6 H 0.088 0.912
7 C -0.139 4.139
8 N -0.523 5.523
9 Si 0.740 3.260
10 H -0.195 1.195
11 H -0.207 1.207
12 H -0.206 1.206
13 O -0.256 6.256
14 C 0.325 3.675
15 O -0.403 6.403
16 C -0.776 4.776
17 S 2.729 3.271
18 O -0.926 6.926
19 O -0.931 6.931
20 N -0.875 5.875
21 C 0.035 3.965
22 C -0.188 4.188
23 C -0.153 4.153
24 C -0.112 4.112
25 C -0.207 4.207
26 C -0.155 4.155
27 C -0.159 4.159
28 H 0.075 0.925
29 H 0.050 0.950
30 H 0.056 0.944
31 H 0.062 0.938
32 H 0.130 0.870
33 H 0.077 0.923
34 H 0.183 0.817
35 H 0.180 0.820
36 H 0.253 0.747
37 H 0.114 0.886
38 H 0.088 0.912
39 H 0.098 0.902
40 H 0.084 0.916
41 H 0.085 0.915
42 H 0.089 0.911
43 H 0.074 0.926
44 H 0.073 0.927
45 H 0.072 0.928
46 H 0.084 0.916
47 H 0.082 0.918
48 H 0.096 0.904
49 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -11.379 9.606 -19.157 24.264
hybrid contribution 1.580 0.165 -0.364 1.630
sum -9.799 9.771 -19.520 23.928
Atomic orbital electron populations
1.21907 0.98144 0.99469 1.00954 1.22051 0.92783 0.99008 1.03638
1.20916 0.95420 0.89031 0.78181 0.92955 1.21041 0.89319 1.39361
1.06464 0.91170 1.24897 0.99412 0.94649 0.94977 1.69893 1.35421
1.37539 1.09453 0.86195 0.83612 0.77920 0.78264 1.19488 1.20674
1.20649 1.86473 1.32735 1.61646 1.44697 1.21591 0.82099 0.77081
0.86738 1.90765 1.55390 1.58977 1.35155 1.31048 1.26894 1.13733
1.05884 1.04285 0.75716 0.74698 0.72408 1.93596 1.53191 1.61797
1.84020 1.93602 1.86695 1.52753 1.60023 1.55918 1.86433 1.18539
1.26560 1.20926 0.95502 0.94904 0.85172 1.22238 0.97414 0.98197
1.00912 1.21575 0.98081 0.95751 0.99941 1.21162 0.94993 0.96666
0.98340 1.21842 1.01127 0.96372 1.01315 1.21613 0.97141 0.96794
0.99922 1.21748 0.97826 0.96744 0.99631 0.92502 0.95014 0.94390
0.93788 0.87012 0.92278 0.81660 0.81991 0.74686 0.88574 0.91159
0.90163 0.91598 0.91513 0.91081 0.92594 0.92695 0.92803 0.91627
0.91799 0.90435 0.90791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.28 8.57 37.16 0.32 -2.97 16
2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16
3 C 0.22 5.73 2.25 -27.88 -0.06 5.66 16
4 H 0.05 1.53 7.16 -51.93 -0.37 1.16 16
5 C -0.52 -14.47 8.90 -34.44 -0.31 -14.78 16
6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16
7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16
8 N -0.89 -24.80 11.29 55.43 0.63 -24.17 16
9 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16
10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
13 O -0.34 -7.90 9.81 -39.27 -0.39 -8.29 16
14 C 0.48 9.95 6.43 36.01 0.23 10.18 16
15 O -0.51 -12.03 13.01 -18.76 -0.24 -12.27 16
16 C -0.65 -8.77 5.81 36.01 0.21 -8.56 16
17 S 2.64 37.36 4.58 -107.50 -0.49 36.86 16
18 O -0.94 -16.15 17.39 -57.55 -1.00 -17.15 16
19 O -0.94 -16.56 18.08 -57.55 -1.04 -17.60 16
20 N -1.11 -9.97 4.63 -4.89 -0.02 -9.99 16
21 C 0.14 1.04 3.02 -67.93 -0.21 0.84 16
22 C -0.15 -0.92 5.60 -26.73 -0.15 -1.07 16
23 C -0.12 -0.70 5.05 -26.73 -0.13 -0.83 16
24 C -0.09 -0.50 2.72 -90.62 -0.25 -0.75 16
25 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16
26 C -0.12 -0.64 5.02 -26.73 -0.13 -0.77 16
27 C -0.12 -0.72 5.63 -26.73 -0.15 -0.87 16
28 H 0.06 1.33 7.80 -51.93 -0.40 0.92 16
29 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16
30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16
32 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16
33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16
34 H 0.17 1.69 8.14 -51.92 -0.42 1.26 16
35 H 0.16 1.62 6.77 -51.93 -0.35 1.27 16
36 H 0.42 3.06 6.78 -34.47 -0.23 2.83 16
37 H 0.10 0.74 7.48 -51.93 -0.39 0.35 16
38 H 0.07 0.43 5.78 -51.93 -0.30 0.13 16
39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16
40 H 0.07 0.39 8.14 -51.94 -0.42 -0.04 16
41 H 0.07 0.41 7.44 -51.93 -0.39 0.03 16
42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
43 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16
44 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16
45 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
47 H 0.06 0.36 6.51 -51.93 -0.34 0.02 16
48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 390.16 15.07 5.88 5.88
Total: -1.00 -34.97 390.16 -10.25 -45.22
By element:
Atomic # 1 Polarization: 10.03 SS G_CDS: -8.02 Total: 2.02 kcal
Atomic # 6 Polarization: -15.74 SS G_CDS: -0.53 Total: -16.27 kcal
Atomic # 7 Polarization: -34.77 SS G_CDS: 0.60 Total: -34.16 kcal
Atomic # 8 Polarization: -52.64 SS G_CDS: -2.67 Total: -55.31 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal
Atomic # 16 Polarization: 37.36 SS G_CDS: -0.49 Total: 36.86 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -34.97 -10.25 -45.22 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187953346.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -142.136 kcal
(2) G-P(sol) polarization free energy of solvation -34.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -187.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds