Wall clock time and date at job start Wed Apr 1 2020 04:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47155 * 2 1 4 4 H 1.08996 * 109.47216 * 304.99892 * 3 2 1 5 5 C 1.50703 * 109.46718 * 185.00138 * 3 2 1 6 6 H 1.08003 * 119.99447 * 239.99523 * 5 3 2 7 7 C 1.37869 * 120.00145 * 60.00334 * 5 3 2 8 8 N 1.31516 * 120.00185 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99965 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46863 * 59.99702 * 9 7 5 11 11 H 1.48497 * 109.46893 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46708 * 299.99610 * 9 7 5 13 13 N 1.46496 * 109.47103 * 65.00261 * 3 2 1 14 14 C 1.34782 * 120.00023 * 274.99968 * 13 3 2 15 15 O 1.21368 * 119.99602 * 359.97438 * 14 13 3 16 16 C 1.49327 * 120.00388 * 180.02562 * 14 13 3 17 17 O 1.21391 * 119.99888 * 359.97438 * 16 14 13 18 18 N 1.34772 * 120.00139 * 179.72233 * 16 14 13 19 19 C 1.39854 * 119.99855 * 174.86185 * 18 16 14 20 20 C 1.38927 * 120.02370 * 146.40884 * 19 18 16 21 21 C 1.38078 * 119.94877 * 179.84790 * 20 19 18 22 22 C 1.38818 * 120.30727 * 0.53265 * 21 20 19 23 23 C 1.39012 * 119.99123 * 359.58558 * 22 21 20 24 24 C 1.38704 * 120.02672 * 326.68040 * 19 18 16 25 25 N 1.39854 * 121.86901 * 180.37421 * 23 22 21 26 26 C 1.46899 * 111.00082 * 104.74895 * 25 23 22 27 27 C 1.46752 * 112.13990 * 339.95737 * 25 23 22 28 28 C 1.53422 * 108.59260 * 50.27052 * 27 25 23 29 29 O 1.36231 * 118.66522 * 179.44228 * 22 21 20 30 30 H 1.09007 * 109.47218 * 299.99912 * 1 2 3 31 31 H 1.09003 * 109.47297 * 59.99952 * 1 2 3 32 32 H 1.08995 * 109.47733 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46987 * 239.99589 * 2 1 3 34 34 H 1.08995 * 109.46983 * 119.99987 * 2 1 3 35 35 H 0.96998 * 120.00154 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00419 * 95.00116 * 13 3 2 37 37 H 0.96993 * 120.00305 * 354.85798 * 18 16 14 38 38 H 1.07997 * 120.02648 * 0.09271 * 20 19 18 39 39 H 1.08000 * 119.84747 * 180.27847 * 21 20 19 40 40 H 1.08004 * 119.89933 * 359.90044 * 24 19 18 41 41 H 1.09001 * 109.47345 * 59.99662 * 26 25 23 42 42 H 1.08994 * 109.47593 * 180.02562 * 26 25 23 43 43 H 1.09009 * 109.46626 * 299.99955 * 26 25 23 44 44 H 1.09001 * 109.62077 * 170.00204 * 27 25 23 45 45 H 1.09003 * 109.61355 * 290.53913 * 27 25 23 46 46 H 1.08995 * 109.78227 * 56.31013 * 28 27 25 47 47 H 1.08998 * 109.77749 * 177.11941 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1729 9 14 6.0050 0.8811 -1.3818 10 1 6.5974 0.1471 -0.2349 11 1 6.3977 0.2166 -2.6504 12 1 6.4994 2.2814 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3398 2.6327 0.4335 16 6 0.0403 3.3325 2.6428 17 8 0.8156 3.3646 3.5763 18 7 -1.1749 3.9043 2.7560 19 6 -1.5863 4.4350 3.9828 20 6 -2.4024 5.5589 4.0154 21 6 -2.8103 6.0797 5.2273 22 6 -2.3998 5.4920 6.4161 23 6 -1.5812 4.3687 6.3896 24 6 -1.1754 3.8430 5.1680 25 7 -1.1509 3.7409 7.5628 26 6 -1.8855 2.4892 7.7901 27 6 -1.2452 4.6253 8.7301 28 6 -2.6513 5.2379 8.7672 29 8 -2.8128 6.0402 7.5929 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0618 -2.9495 36 1 2.2720 2.1232 1.9978 37 1 -1.7640 3.9478 1.9867 38 1 -2.7207 6.0225 3.0934 39 1 -3.4483 6.9507 5.2507 40 1 -0.5388 2.9710 5.1417 41 1 -1.7201 1.8133 6.9510 42 1 -1.5315 2.0218 8.7088 43 1 -2.9505 2.7041 7.8791 44 1 -1.0724 4.0504 9.6399 45 1 -0.5023 5.4189 8.6488 46 1 -3.3990 4.4449 8.7776 47 1 -2.7595 5.8594 9.6561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188815734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:23 Heat of formation + Delta-G solvation = -61.906668 kcal Electronic energy + Delta-G solvation = -30520.692019 eV Core-core repulsion = 26283.327669 eV Total energy + Delta-G solvation = -4237.364349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48450 -40.47787 -38.67576 -37.38717 -36.78978 -35.42094 -34.38004 -32.41510 -31.01315 -30.94571 -30.03799 -28.73957 -27.28406 -25.91160 -24.87041 -24.01356 -23.10486 -22.39296 -20.54982 -20.22294 -19.49013 -18.58689 -18.25582 -17.51669 -17.04671 -16.36548 -16.12436 -15.62696 -15.51363 -15.19960 -15.08426 -14.97777 -14.72461 -14.34138 -14.15244 -13.98681 -13.57197 -13.49209 -13.28045 -12.75324 -12.67558 -12.52331 -12.43420 -12.10951 -11.86287 -11.72688 -11.59327 -11.41825 -11.32046 -11.15708 -10.98494 -10.85759 -10.37515 -10.27697 -10.00237 -9.71865 -9.66014 -9.15604 -9.04148 -8.56907 -8.39914 -8.04907 -7.86253 -6.17783 -4.27561 0.98482 1.13278 1.90146 2.66798 2.95545 3.25253 3.26906 3.30062 3.32518 3.49168 3.77273 4.09432 4.16839 4.33816 4.49995 4.54706 4.62030 4.87329 4.95954 5.00549 5.02819 5.08880 5.11636 5.14683 5.25913 5.39981 5.49879 5.62620 5.66576 5.97062 6.08962 6.15326 6.30155 6.35131 6.44810 6.54103 6.62259 6.73358 6.93444 7.00342 7.13117 7.18278 7.20607 7.26316 7.49185 7.62834 7.77369 7.92644 8.07456 8.43670 8.61378 8.85329 9.39272 10.87543 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.002254 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.022195 B =12417.243685 C =12826.389077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.495 3.505 15 O -0.530 6.530 16 C 0.505 3.495 17 O -0.502 6.502 18 N -0.650 5.650 19 C 0.134 3.866 20 C -0.120 4.120 21 C -0.112 4.112 22 C 0.069 3.931 23 C 0.046 3.954 24 C -0.086 4.086 25 N -0.489 5.489 26 C 0.024 3.976 27 C 0.016 3.984 28 C 0.021 3.979 29 O -0.310 6.310 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.026 0.974 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.423 0.577 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.080 7.584 19.486 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.316 5.316 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.288 3.712 17 O -0.375 6.375 18 N -0.297 5.297 19 C 0.039 3.961 20 C -0.140 4.140 21 C -0.131 4.131 22 C 0.021 3.979 23 C -0.051 4.051 24 C -0.107 4.107 25 N -0.206 5.206 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.056 4.056 29 O -0.224 6.224 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.122 0.878 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.236 0.764 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.557 7.427 19.241 24.681 hybrid contribution 0.356 0.030 0.148 0.387 sum -13.201 7.456 19.388 24.612 Atomic orbital electron populations 1.21855 0.98302 0.98405 1.01031 1.21966 0.92643 0.99406 1.02784 1.19012 0.94769 0.89385 0.80100 0.92732 1.21171 0.90316 1.39498 1.06583 0.91810 1.24865 0.98816 0.94591 0.95229 1.69870 1.35359 1.37354 1.09352 0.86468 0.84535 0.78430 0.77482 1.20053 1.21096 1.20089 1.46467 1.13368 1.52533 1.19218 1.19585 0.84522 0.81523 0.87048 1.90744 1.51143 1.59587 1.39355 1.21024 0.81474 0.78953 0.89785 1.90766 1.50277 1.56082 1.40413 1.43203 1.17565 1.57247 1.11704 1.17469 0.99031 0.94316 0.85248 1.20729 1.00650 0.94534 0.98123 1.20177 1.02426 1.01653 0.88876 1.18985 0.95883 0.96698 0.86339 1.18458 0.98173 0.97140 0.91313 1.20782 0.99919 1.01250 0.88795 1.59088 1.54473 1.05825 1.01186 1.22593 0.95642 0.90495 1.03418 1.22988 0.96743 0.97541 0.93916 1.23541 0.98160 0.96321 0.87580 1.86309 1.80034 1.42410 1.13650 0.94636 0.92925 0.95490 0.87833 0.94660 0.92382 0.76373 0.73874 0.84547 0.84633 0.83772 0.90285 0.90386 0.94872 0.88247 0.88677 0.91671 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.55 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.67 -13.98 5.01 -55.40 -0.28 -14.26 16 14 C 0.49 9.60 6.45 -11.64 -0.08 9.52 16 15 O -0.53 -11.05 13.62 5.48 0.07 -10.98 16 16 C 0.50 8.51 7.62 -11.65 -0.09 8.42 16 17 O -0.50 -9.25 14.16 5.46 0.08 -9.17 16 18 N -0.65 -8.90 5.33 -10.32 -0.05 -8.96 16 19 C 0.13 1.75 6.27 -83.77 -0.53 1.22 16 20 C -0.12 -1.28 9.96 -39.38 -0.39 -1.67 16 21 C -0.11 -1.18 9.93 -39.43 -0.39 -1.57 16 22 C 0.07 0.81 6.48 -39.08 -0.25 0.55 16 23 C 0.05 0.57 5.12 -83.61 -0.43 0.14 16 24 C -0.09 -1.18 8.08 -39.11 -0.32 -1.50 16 25 N -0.49 -5.21 4.86 -178.67 -0.87 -6.08 16 26 C 0.02 0.20 9.20 60.06 0.55 0.75 16 27 C 0.02 0.13 6.02 -3.69 -0.02 0.10 16 28 C 0.02 0.15 7.06 37.38 0.26 0.42 16 29 O -0.31 -3.31 10.40 -20.48 -0.21 -3.52 16 30 H 0.03 0.72 5.65 -51.92 -0.29 0.43 16 31 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.40 7.96 8.01 -40.82 -0.33 7.64 16 37 H 0.42 5.06 8.30 -40.82 -0.34 4.72 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.14 2.22 6.40 -52.48 -0.34 1.88 16 41 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 42 H 0.08 0.49 7.98 -51.93 -0.41 0.08 16 43 H 0.03 0.25 6.89 -51.92 -0.36 -0.10 16 44 H 0.10 0.52 7.90 -51.93 -0.41 0.11 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.44 6.80 -51.93 -0.35 0.08 16 47 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -30.41 379.83 -8.41 -38.82 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.43 Total: 11.99 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.06 Total: 4.43 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.57 Total: -52.69 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.41 -8.41 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188815734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.087 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds