Wall clock time and date at job start Wed Apr 1 2020 04:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47155 * 2 1 4 4 H 1.08996 * 109.47216 * 304.99892 * 3 2 1 5 5 C 1.50703 * 109.46718 * 185.00138 * 3 2 1 6 6 H 1.08003 * 119.99447 * 239.99523 * 5 3 2 7 7 C 1.37869 * 120.00145 * 60.00334 * 5 3 2 8 8 N 1.31516 * 120.00185 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99965 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46863 * 59.99702 * 9 7 5 11 11 H 1.48497 * 109.46893 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46708 * 299.99610 * 9 7 5 13 13 N 1.46496 * 109.47103 * 65.00261 * 3 2 1 14 14 C 1.34782 * 120.00023 * 274.99968 * 13 3 2 15 15 O 1.21368 * 119.99602 * 359.97438 * 14 13 3 16 16 C 1.49327 * 120.00388 * 180.02562 * 14 13 3 17 17 O 1.21391 * 119.99888 * 359.97438 * 16 14 13 18 18 N 1.34772 * 120.00139 * 179.72233 * 16 14 13 19 19 C 1.39854 * 119.99855 * 174.86185 * 18 16 14 20 20 C 1.38927 * 120.02370 * 146.40884 * 19 18 16 21 21 C 1.38078 * 119.94877 * 179.84790 * 20 19 18 22 22 C 1.38818 * 120.30727 * 0.53265 * 21 20 19 23 23 C 1.39012 * 119.99123 * 359.58558 * 22 21 20 24 24 C 1.38704 * 120.02672 * 326.68040 * 19 18 16 25 25 N 1.39854 * 121.86901 * 180.37421 * 23 22 21 26 26 C 1.46899 * 111.00082 * 104.74895 * 25 23 22 27 27 C 1.46752 * 112.13990 * 339.95737 * 25 23 22 28 28 C 1.53422 * 108.59260 * 50.27052 * 27 25 23 29 29 O 1.36231 * 118.66522 * 179.44228 * 22 21 20 30 30 H 1.09007 * 109.47218 * 299.99912 * 1 2 3 31 31 H 1.09003 * 109.47297 * 59.99952 * 1 2 3 32 32 H 1.08995 * 109.47733 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46987 * 239.99589 * 2 1 3 34 34 H 1.08995 * 109.46983 * 119.99987 * 2 1 3 35 35 H 0.96998 * 120.00154 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00419 * 95.00116 * 13 3 2 37 37 H 0.96993 * 120.00305 * 354.85798 * 18 16 14 38 38 H 1.07997 * 120.02648 * 0.09271 * 20 19 18 39 39 H 1.08000 * 119.84747 * 180.27847 * 21 20 19 40 40 H 1.08004 * 119.89933 * 359.90044 * 24 19 18 41 41 H 1.09001 * 109.47345 * 59.99662 * 26 25 23 42 42 H 1.08994 * 109.47593 * 180.02562 * 26 25 23 43 43 H 1.09009 * 109.46626 * 299.99955 * 26 25 23 44 44 H 1.09001 * 109.62077 * 170.00204 * 27 25 23 45 45 H 1.09003 * 109.61355 * 290.53913 * 27 25 23 46 46 H 1.08995 * 109.78227 * 56.31013 * 28 27 25 47 47 H 1.08998 * 109.77749 * 177.11941 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1729 9 14 6.0050 0.8811 -1.3818 10 1 6.5974 0.1471 -0.2349 11 1 6.3977 0.2166 -2.6504 12 1 6.4994 2.2814 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3398 2.6327 0.4335 16 6 0.0403 3.3325 2.6428 17 8 0.8156 3.3646 3.5763 18 7 -1.1749 3.9043 2.7560 19 6 -1.5863 4.4350 3.9828 20 6 -2.4024 5.5589 4.0154 21 6 -2.8103 6.0797 5.2273 22 6 -2.3998 5.4920 6.4161 23 6 -1.5812 4.3687 6.3896 24 6 -1.1754 3.8430 5.1680 25 7 -1.1509 3.7409 7.5628 26 6 -1.8855 2.4892 7.7901 27 6 -1.2452 4.6253 8.7301 28 6 -2.6513 5.2379 8.7672 29 8 -2.8128 6.0402 7.5929 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0618 -2.9495 36 1 2.2720 2.1232 1.9978 37 1 -1.7640 3.9478 1.9867 38 1 -2.7207 6.0225 3.0934 39 1 -3.4483 6.9507 5.2507 40 1 -0.5388 2.9710 5.1417 41 1 -1.7201 1.8133 6.9510 42 1 -1.5315 2.0218 8.7088 43 1 -2.9505 2.7041 7.8791 44 1 -1.0724 4.0504 9.6399 45 1 -0.5023 5.4189 8.6488 46 1 -3.3990 4.4449 8.7776 47 1 -2.7595 5.8594 9.6561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188815734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:22 Heat of formation + Delta-G solvation = -83.710475 kcal Electronic energy + Delta-G solvation = -30521.637503 eV Core-core repulsion = 26283.327669 eV Total energy + Delta-G solvation = -4238.309833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39093 -41.73673 -40.10345 -38.48387 -37.54608 -37.17060 -35.57856 -34.29737 -32.82078 -31.73360 -30.93203 -29.56437 -29.12293 -26.83853 -26.04526 -25.08028 -24.60737 -23.55533 -21.91588 -21.27781 -21.19704 -20.00192 -19.06975 -18.56160 -18.26698 -17.74987 -17.50588 -17.09223 -16.81088 -16.54552 -16.05029 -15.95832 -15.75310 -15.57386 -15.42567 -15.05974 -14.77005 -14.61989 -14.55459 -14.23102 -13.85221 -13.53180 -13.45068 -13.26957 -13.19561 -13.10868 -12.97503 -12.69926 -12.64754 -12.60197 -12.51168 -12.17264 -12.11329 -11.97502 -11.60208 -11.11649 -11.01908 -10.66760 -10.54536 -10.38358 -9.84165 -9.24059 -8.78258 -8.18451 -6.35457 -0.06182 0.22087 0.60303 1.33139 1.46422 1.46897 1.55149 2.14729 2.25807 2.39208 2.50868 2.68699 2.85351 3.11299 3.47028 3.54383 3.82953 3.96316 3.97339 4.13025 4.20269 4.29846 4.34465 4.44264 4.48711 4.54992 4.58332 4.65524 4.71488 4.80290 4.84243 4.86807 5.01967 5.12485 5.16956 5.20796 5.24498 5.36335 5.39424 5.54866 5.56759 5.68630 5.78820 5.82702 5.95385 6.03929 6.11484 6.37510 6.57425 6.66828 6.80931 7.10437 7.36409 8.86481 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.002254 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.022195 B =12417.243685 C =12826.389077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.555 4.555 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.545 6.545 16 C 0.513 3.487 17 O -0.521 6.521 18 N -0.631 5.631 19 C 0.112 3.888 20 C -0.109 4.109 21 C -0.111 4.111 22 C 0.065 3.935 23 C 0.039 3.961 24 C -0.103 4.103 25 N -0.510 5.510 26 C 0.026 3.974 27 C 0.015 3.985 28 C 0.018 3.982 29 O -0.320 6.320 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.267 0.733 36 H 0.407 0.593 37 H 0.432 0.568 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.121 0.879 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.040 0.960 44 H 0.127 0.873 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 8.580 21.506 27.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.593 4.593 6 H 0.085 0.915 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.321 5.321 14 C 0.277 3.723 15 O -0.424 6.424 16 C 0.296 3.704 17 O -0.396 6.396 18 N -0.279 5.279 19 C 0.018 3.982 20 C -0.129 4.129 21 C -0.130 4.130 22 C 0.017 3.983 23 C -0.059 4.059 24 C -0.125 4.125 25 N -0.227 5.227 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.058 4.058 29 O -0.234 6.234 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.243 0.757 37 H 0.271 0.729 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.146 0.854 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.469 8.442 21.297 27.096 hybrid contribution 0.529 -0.224 -0.367 0.682 sum -13.940 8.217 20.930 26.456 Atomic orbital electron populations 1.21706 0.96506 0.99686 1.00425 1.21822 0.94194 0.98544 1.01681 1.18636 0.94041 0.89591 0.80291 0.96626 1.21488 0.91274 1.39611 1.06915 0.91500 1.25665 1.03126 0.94169 0.94879 1.69998 1.37045 1.37877 1.09757 0.85467 0.79281 0.78430 0.77598 1.19261 1.20782 1.19811 1.46246 1.14334 1.53139 1.18343 1.19967 0.83676 0.80829 0.87868 1.90731 1.51426 1.59915 1.40306 1.20352 0.82449 0.79398 0.88244 1.90768 1.51134 1.57225 1.40471 1.43008 1.16336 1.55959 1.12552 1.17644 1.00550 0.95678 0.84328 1.20986 0.99152 0.93315 0.99485 1.20526 1.02122 1.02019 0.88356 1.19194 0.95447 0.96348 0.87339 1.18564 0.98220 0.97543 0.91531 1.20701 1.00581 1.01209 0.90025 1.59072 1.55108 1.06916 1.01628 1.22609 0.96011 0.89502 1.03782 1.23098 0.96913 0.97329 0.93913 1.23822 0.97774 0.96950 0.87243 1.86296 1.79802 1.43243 1.14084 0.94168 0.94466 0.93229 0.90248 0.94242 0.92342 0.75720 0.72857 0.81837 0.82176 0.86115 0.91863 0.88198 0.94106 0.85448 0.89830 0.90880 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.51 71.98 0.61 -4.74 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 13.92 2.24 44.25 0.10 14.02 16 4 H 0.02 0.91 7.58 -2.39 -0.02 0.90 16 5 C -0.55 -29.36 8.73 25.60 0.22 -29.13 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -50.52 11.29 21.44 0.24 -50.28 16 9 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.67 -28.80 5.01 -447.55 -2.24 -31.04 16 14 C 0.50 19.61 6.45 87.23 0.56 20.17 16 15 O -0.54 -23.09 13.62 -3.30 -0.04 -23.14 16 16 C 0.51 17.48 7.62 87.23 0.66 18.15 16 17 O -0.52 -19.56 14.16 -3.37 -0.05 -19.60 16 18 N -0.63 -17.07 5.33 -304.93 -1.62 -18.70 16 19 C 0.11 2.85 6.27 38.14 0.24 3.09 16 20 C -0.11 -2.11 9.96 22.40 0.22 -1.89 16 21 C -0.11 -2.09 9.93 22.37 0.22 -1.86 16 22 C 0.06 1.42 6.48 22.59 0.15 1.56 16 23 C 0.04 0.94 5.12 38.24 0.20 1.13 16 24 C -0.10 -2.88 8.08 22.58 0.18 -2.69 16 25 N -0.51 -10.41 4.86 -719.20 -3.49 -13.90 16 26 C 0.03 0.41 9.20 127.69 1.17 1.58 16 27 C 0.01 0.20 6.02 86.47 0.52 0.72 16 28 C 0.02 0.22 7.06 72.12 0.51 0.72 16 29 O -0.32 -6.10 10.40 -96.18 -1.00 -7.11 16 30 H 0.04 1.64 5.65 -2.38 -0.01 1.63 16 31 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.41 16.51 8.01 -92.71 -0.74 15.77 16 37 H 0.43 9.99 8.30 -92.71 -0.77 9.22 16 38 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.12 3.89 6.40 -2.91 -0.02 3.88 16 41 H 0.06 1.17 7.85 -2.39 -0.02 1.15 16 42 H 0.10 1.07 7.98 -2.39 -0.02 1.05 16 43 H 0.04 0.56 6.89 -2.38 -0.02 0.55 16 44 H 0.13 0.97 7.90 -2.39 -0.02 0.96 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 0.77 6.80 -2.39 -0.02 0.75 16 47 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -66.87 379.83 -0.48 -67.34 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.48 Total: 35.69 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.19 Total: 16.72 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -7.12 Total: -113.92 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.09 Total: -49.84 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.87 -0.48 -67.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188815734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.366 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds