Wall clock time and date at job start Wed Apr 1 2020 04:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47363 * 2 1 4 4 N 1.46501 * 109.47071 * 120.00147 * 2 1 3 5 5 C 1.46821 * 124.33260 * 119.93213 * 4 2 1 6 6 C 1.54481 * 105.44587 * 197.00061 * 5 4 2 7 7 C 1.54630 * 101.79628 * 334.62930 * 6 5 4 8 8 H 1.09004 * 110.48522 * 143.58467 * 7 6 5 9 9 N 1.46497 * 110.48953 * 266.10175 * 7 6 5 10 10 C 1.34778 * 120.00249 * 205.00117 * 9 7 6 11 11 O 1.21593 * 119.99476 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00147 * 180.02562 * 10 9 7 13 13 C 1.39945 * 120.00183 * 174.74578 * 12 10 9 14 14 C 1.38957 * 120.04007 * 146.42688 * 13 12 10 15 15 C 1.38153 * 120.07226 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13561 * 359.97438 * 15 14 13 17 17 C 1.38910 * 120.06946 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.03015 * 180.02562 * 17 16 15 19 19 C 1.34834 * 117.00323 * 5.91452 * 18 17 16 20 20 H 1.08001 * 119.99663 * 5.40694 * 19 18 17 21 21 C 1.38654 * 119.99888 * 185.40674 * 19 18 17 22 22 N 1.31558 * 120.00153 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99755 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46909 * 90.00162 * 23 21 19 25 25 H 1.48502 * 109.46628 * 209.99819 * 23 21 19 26 26 H 1.48498 * 109.46946 * 330.00067 * 23 21 19 27 27 C 1.38706 * 120.03369 * 326.15846 * 13 12 10 28 28 C 1.34420 * 124.34964 * 299.97592 * 4 2 1 29 29 O 1.21277 * 124.93887 * 359.54525 * 28 4 2 30 30 H 1.09006 * 109.47222 * 300.00146 * 1 2 3 31 31 H 1.09005 * 109.46889 * 59.99804 * 1 2 3 32 32 H 1.09000 * 109.47449 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47222 * 239.99854 * 2 1 3 34 34 H 1.09005 * 109.47277 * 299.99958 * 3 2 1 35 35 H 1.09004 * 109.47097 * 60.00299 * 3 2 1 36 36 H 1.09002 * 109.47369 * 180.02562 * 3 2 1 37 37 H 1.09007 * 110.23908 * 78.02356 * 5 4 2 38 38 H 1.09003 * 110.28962 * 316.00250 * 5 4 2 39 39 H 1.09000 * 110.97083 * 216.49512 * 6 5 4 40 40 H 1.08998 * 110.97139 * 92.76595 * 6 5 4 41 41 H 0.97000 * 119.99843 * 24.99332 * 9 7 6 42 42 H 0.97002 * 120.00458 * 354.73628 * 12 10 9 43 43 H 1.08001 * 119.96140 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.93472 * 180.02562 * 15 14 13 45 45 H 1.08005 * 119.96657 * 179.97438 * 16 15 14 46 46 H 0.96996 * 120.00386 * 180.02562 * 22 21 19 47 47 H 1.08003 * 120.06868 * 359.97014 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8647 -1.8901 1.1723 6 6 2.7603 -2.4956 2.5896 7 6 2.4040 -1.2533 3.4386 8 1 1.7092 -1.5217 4.2345 9 7 3.6159 -0.6506 3.9992 10 6 3.5434 0.0856 5.1258 11 8 2.4719 0.2500 5.6766 12 7 4.6582 0.6405 5.6411 13 6 4.5683 1.4942 6.7464 14 6 5.5886 1.5214 7.6892 15 6 5.5003 2.3635 8.7808 16 6 4.3980 3.1816 8.9384 17 6 3.3752 3.1599 7.9988 18 8 2.2928 3.9643 8.1542 19 6 2.3273 4.8472 9.1727 20 1 3.2234 4.9520 9.7663 21 6 1.2123 5.6205 9.4580 22 7 0.1209 5.4931 8.7346 23 14 1.2604 6.8440 10.8687 24 1 1.7361 8.1585 10.3677 25 1 -0.1022 6.9954 11.4392 26 1 2.1856 6.3508 11.9203 27 6 3.4630 2.3183 6.8989 28 6 1.7483 -0.3081 2.4562 29 8 1.0774 0.6552 2.7609 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 -0.0005 37 1 3.8974 -1.6186 0.9533 38 1 2.4950 -2.5989 0.4312 39 1 3.7133 -2.9219 2.9029 40 1 1.9669 -3.2415 2.6377 41 1 4.4706 -0.7816 3.5596 42 1 5.5230 0.4480 5.2461 43 1 6.4517 0.8834 7.5685 44 1 6.2948 2.3831 9.5120 45 1 4.3316 3.8386 9.7931 46 1 -0.6590 6.0343 8.9339 47 1 2.6709 2.3026 6.1649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265222813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:44 Heat of formation + Delta-G solvation = -46.680456 kcal Electronic energy + Delta-G solvation = -30445.597253 eV Core-core repulsion = 26208.893162 eV Total energy + Delta-G solvation = -4236.704091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13140 -39.95958 -38.58443 -36.72286 -36.52795 -35.65954 -34.02781 -33.29854 -32.15113 -29.89361 -29.25709 -28.34734 -27.39440 -27.09295 -25.19156 -22.96358 -22.67158 -21.93414 -21.38724 -20.65585 -19.08621 -18.50998 -18.18894 -17.27548 -16.92771 -16.55734 -15.68660 -15.48947 -15.23018 -14.96630 -14.68612 -14.54411 -14.23850 -14.10479 -13.94485 -13.86188 -13.69906 -13.42265 -13.21499 -13.18422 -12.76140 -12.42020 -12.27641 -12.12989 -11.96323 -11.74756 -11.64378 -11.49563 -11.45702 -11.35945 -11.10677 -10.91207 -10.70906 -10.39614 -10.24229 -9.94448 -9.65869 -9.19156 -8.97456 -8.92044 -8.72437 -7.56652 -7.08709 -6.32254 -3.91748 2.05398 2.28025 2.44348 2.67433 2.98296 3.20115 3.20598 3.26046 3.39203 4.00237 4.04168 4.10020 4.22447 4.40568 4.55940 4.68943 4.70989 4.84114 4.92443 5.01956 5.22642 5.28563 5.33524 5.39641 5.42044 5.43902 5.50857 5.56574 5.65220 5.69878 5.90825 6.00621 6.07363 6.17606 6.23932 6.30799 6.42992 6.46832 6.56868 6.90392 6.93952 7.10722 7.15782 7.28237 7.42877 7.58847 7.90658 8.04083 8.12047 8.12676 8.71673 9.11906 9.85003 10.85592 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.002620 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.832357 B =10685.552826 C =12307.419265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.155 3.845 3 C -0.169 4.169 4 N -0.621 5.621 5 C 0.102 3.898 6 C -0.141 4.141 7 C 0.134 3.866 8 H 0.124 0.876 9 N -0.730 5.730 10 C 0.698 3.302 11 O -0.543 6.543 12 N -0.680 5.680 13 C 0.195 3.805 14 C -0.238 4.238 15 C -0.059 4.059 16 C -0.247 4.247 17 C 0.169 3.831 18 O -0.173 6.173 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.859 5.859 23 Si 0.941 3.059 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.186 4.186 28 C 0.503 3.497 29 O -0.493 6.493 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.397 0.603 42 H 0.400 0.600 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.269 0.731 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.274 -17.710 -18.393 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 C -0.227 4.227 4 N -0.359 5.359 5 C -0.021 4.021 6 C -0.179 4.179 7 C 0.025 3.975 8 H 0.142 0.858 9 N -0.389 5.389 10 C 0.398 3.602 11 O -0.415 6.415 12 N -0.327 5.327 13 C 0.101 3.899 14 C -0.259 4.259 15 C -0.077 4.077 16 C -0.267 4.267 17 C 0.114 3.886 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.200 1.200 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.207 4.207 28 C 0.287 3.713 29 O -0.364 6.364 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.231 0.769 42 H 0.235 0.765 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.079 0.921 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.360 -16.857 -17.937 25.996 hybrid contribution 0.988 0.334 0.183 1.059 sum 9.348 -16.524 -17.755 25.993 Atomic orbital electron populations 1.22197 0.94655 1.02285 1.03591 1.20917 0.94533 0.93150 0.86117 1.22193 1.01120 0.95822 1.03610 1.48510 1.51735 1.29419 1.06192 1.22098 0.95141 0.86851 0.98011 1.22941 1.04682 0.96627 0.93651 1.21425 0.88402 0.91562 0.96155 0.85780 1.44773 1.09654 1.57125 1.27332 1.15944 0.84716 0.78841 0.80651 1.91084 1.27014 1.62568 1.60839 1.42427 1.08402 1.49125 1.32776 1.16911 0.95890 0.90358 0.86740 1.20198 1.00882 1.07315 0.97518 1.20470 0.96677 0.94666 0.95932 1.21169 0.96548 1.06220 1.02722 1.19119 0.87639 0.89468 0.92360 1.84024 1.33611 1.42390 1.47571 1.21332 1.00565 1.15022 1.09855 0.89055 1.25308 0.94325 0.98356 0.98642 1.70068 1.02746 1.38659 1.37900 0.85719 0.78025 0.79805 0.79872 1.19950 1.20318 1.19218 1.20088 1.00664 0.99589 1.00386 1.21289 0.80572 0.85829 0.83567 1.90795 1.37438 1.27195 1.80935 0.90752 0.91482 0.92548 0.89666 0.91486 0.90711 0.92632 0.91185 0.90129 0.88285 0.88305 0.76904 0.76535 0.87483 0.87089 0.85495 0.92066 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.20 37.16 0.34 -1.22 16 2 C 0.15 1.32 3.47 -67.94 -0.24 1.09 16 3 C -0.17 -1.68 9.20 37.15 0.34 -1.34 16 4 N -0.62 -5.70 2.83 -164.80 -0.47 -6.17 16 5 C 0.10 0.50 7.31 -3.09 -0.02 0.47 16 6 C -0.14 -0.70 6.78 -25.10 -0.17 -0.87 16 7 C 0.13 1.45 3.28 -67.94 -0.22 1.23 16 8 H 0.12 1.62 7.55 -51.93 -0.39 1.23 16 9 N -0.73 -8.03 5.10 -58.68 -0.30 -8.33 16 10 C 0.70 11.59 8.30 -86.92 -0.72 10.87 16 11 O -0.54 -12.22 13.71 5.28 0.07 -12.15 16 12 N -0.68 -10.30 5.35 -14.24 -0.08 -10.38 16 13 C 0.19 3.83 6.27 -83.71 -0.52 3.30 16 14 C -0.24 -4.21 9.96 -39.35 -0.39 -4.60 16 15 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 16 C -0.25 -5.67 9.13 -39.36 -0.36 -6.03 16 17 C 0.17 4.48 6.64 -39.14 -0.26 4.22 16 18 O -0.17 -5.37 9.76 0.03 0.00 -5.37 16 19 C -0.39 -11.56 9.44 30.89 0.29 -11.27 16 20 H 0.09 2.47 5.29 -52.49 -0.28 2.19 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -26.77 13.67 55.48 0.76 -26.02 16 23 Si 0.94 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 C -0.19 -4.57 8.59 -39.21 -0.34 -4.91 16 28 C 0.50 6.80 7.05 -10.86 -0.08 6.72 16 29 O -0.49 -9.47 15.12 5.56 0.08 -9.38 16 30 H 0.07 0.95 6.80 -51.93 -0.35 0.60 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 1.04 6.77 -51.93 -0.35 0.69 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.10 0.29 8.07 -51.93 -0.42 -0.13 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.40 2.71 8.65 -40.82 -0.35 2.36 16 42 H 0.40 4.13 8.83 -40.82 -0.36 3.77 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.13 2.89 5.71 -52.48 -0.30 2.59 16 46 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.13 3.56 6.45 -52.48 -0.34 3.22 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -40.52 390.17 -8.42 -48.94 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.50 Total: 9.36 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.84 Total: -2.84 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.08 Total: -50.89 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: 0.16 Total: -26.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.52 -8.42 -48.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265222813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.257 kcal (2) G-P(sol) polarization free energy of solvation -40.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds