Wall clock time and date at job start Wed Apr 1 2020 04:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47363 * 2 1 4 4 N 1.46501 * 109.47071 * 120.00147 * 2 1 3 5 5 C 1.46821 * 124.33260 * 119.93213 * 4 2 1 6 6 C 1.54481 * 105.44587 * 197.00061 * 5 4 2 7 7 C 1.54630 * 101.79628 * 334.62930 * 6 5 4 8 8 H 1.09004 * 110.48522 * 143.58467 * 7 6 5 9 9 N 1.46497 * 110.48953 * 266.10175 * 7 6 5 10 10 C 1.34778 * 120.00249 * 205.00117 * 9 7 6 11 11 O 1.21593 * 119.99476 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00147 * 180.02562 * 10 9 7 13 13 C 1.39945 * 120.00183 * 174.74578 * 12 10 9 14 14 C 1.38957 * 120.04007 * 146.42688 * 13 12 10 15 15 C 1.38153 * 120.07226 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13561 * 359.97438 * 15 14 13 17 17 C 1.38910 * 120.06946 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.03015 * 180.02562 * 17 16 15 19 19 C 1.34834 * 117.00323 * 5.91452 * 18 17 16 20 20 H 1.08001 * 119.99663 * 5.40694 * 19 18 17 21 21 C 1.38654 * 119.99888 * 185.40674 * 19 18 17 22 22 N 1.31558 * 120.00153 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99755 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46909 * 90.00162 * 23 21 19 25 25 H 1.48502 * 109.46628 * 209.99819 * 23 21 19 26 26 H 1.48498 * 109.46946 * 330.00067 * 23 21 19 27 27 C 1.38706 * 120.03369 * 326.15846 * 13 12 10 28 28 C 1.34420 * 124.34964 * 299.97592 * 4 2 1 29 29 O 1.21277 * 124.93887 * 359.54525 * 28 4 2 30 30 H 1.09006 * 109.47222 * 300.00146 * 1 2 3 31 31 H 1.09005 * 109.46889 * 59.99804 * 1 2 3 32 32 H 1.09000 * 109.47449 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47222 * 239.99854 * 2 1 3 34 34 H 1.09005 * 109.47277 * 299.99958 * 3 2 1 35 35 H 1.09004 * 109.47097 * 60.00299 * 3 2 1 36 36 H 1.09002 * 109.47369 * 180.02562 * 3 2 1 37 37 H 1.09007 * 110.23908 * 78.02356 * 5 4 2 38 38 H 1.09003 * 110.28962 * 316.00250 * 5 4 2 39 39 H 1.09000 * 110.97083 * 216.49512 * 6 5 4 40 40 H 1.08998 * 110.97139 * 92.76595 * 6 5 4 41 41 H 0.97000 * 119.99843 * 24.99332 * 9 7 6 42 42 H 0.97002 * 120.00458 * 354.73628 * 12 10 9 43 43 H 1.08001 * 119.96140 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.93472 * 180.02562 * 15 14 13 45 45 H 1.08005 * 119.96657 * 179.97438 * 16 15 14 46 46 H 0.96996 * 120.00386 * 180.02562 * 22 21 19 47 47 H 1.08003 * 120.06868 * 359.97014 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8647 -1.8901 1.1723 6 6 2.7603 -2.4956 2.5896 7 6 2.4040 -1.2533 3.4386 8 1 1.7092 -1.5217 4.2345 9 7 3.6159 -0.6506 3.9992 10 6 3.5434 0.0856 5.1258 11 8 2.4719 0.2500 5.6766 12 7 4.6582 0.6405 5.6411 13 6 4.5683 1.4942 6.7464 14 6 5.5886 1.5214 7.6892 15 6 5.5003 2.3635 8.7808 16 6 4.3980 3.1816 8.9384 17 6 3.3752 3.1599 7.9988 18 8 2.2928 3.9643 8.1542 19 6 2.3273 4.8472 9.1727 20 1 3.2234 4.9520 9.7663 21 6 1.2123 5.6205 9.4580 22 7 0.1209 5.4931 8.7346 23 14 1.2604 6.8440 10.8687 24 1 1.7361 8.1585 10.3677 25 1 -0.1022 6.9954 11.4392 26 1 2.1856 6.3508 11.9203 27 6 3.4630 2.3183 6.8989 28 6 1.7483 -0.3081 2.4562 29 8 1.0774 0.6552 2.7609 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 -0.0005 37 1 3.8974 -1.6186 0.9533 38 1 2.4950 -2.5989 0.4312 39 1 3.7133 -2.9219 2.9029 40 1 1.9669 -3.2415 2.6377 41 1 4.4706 -0.7816 3.5596 42 1 5.5230 0.4480 5.2461 43 1 6.4517 0.8834 7.5685 44 1 6.2948 2.3831 9.5120 45 1 4.3316 3.8386 9.7931 46 1 -0.6590 6.0343 8.9339 47 1 2.6709 2.3026 6.1649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265222813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:43 Heat of formation + Delta-G solvation = -79.988880 kcal Electronic energy + Delta-G solvation = -30447.041615 eV Core-core repulsion = 26208.893162 eV Total energy + Delta-G solvation = -4238.148453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16259 -41.30920 -40.35350 -38.37133 -37.62526 -36.66588 -35.60058 -34.36210 -34.20306 -31.23229 -30.62153 -29.72934 -28.19985 -28.02946 -27.31841 -24.31821 -23.46723 -23.18417 -22.73446 -22.14528 -20.11198 -19.89440 -19.84068 -18.95107 -18.15968 -17.46176 -16.94300 -16.81357 -16.68298 -16.39696 -16.05595 -15.96292 -15.56886 -15.53904 -15.38128 -15.14007 -14.77633 -14.58396 -14.41507 -14.27261 -14.14547 -13.87000 -13.59978 -13.22252 -13.08821 -12.94430 -12.85403 -12.66770 -12.54936 -12.45628 -12.36746 -12.17607 -12.13021 -12.11465 -11.63788 -11.35233 -11.31102 -11.05581 -10.76918 -10.05840 -9.71597 -9.31682 -8.84941 -8.46754 -6.17489 0.44509 0.71342 1.08666 1.32492 1.44266 1.52761 1.79555 1.90703 2.09863 2.18111 2.83611 3.09279 3.18177 3.34826 3.40517 3.58048 3.82992 3.95702 4.04991 4.14408 4.17100 4.26006 4.37743 4.43260 4.52263 4.62799 4.64624 4.69830 4.74231 4.79266 4.81408 4.83732 4.92918 5.01473 5.05591 5.09984 5.19398 5.23312 5.28267 5.36894 5.46478 5.63683 5.69964 5.74723 5.90620 6.02769 6.14167 6.22220 6.93780 6.96006 7.16892 7.44616 7.80807 8.77689 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.002620 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.832357 B =10685.552826 C =12307.419265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 C -0.167 4.167 4 N -0.610 5.610 5 C 0.096 3.904 6 C -0.119 4.119 7 C 0.126 3.874 8 H 0.090 0.910 9 N -0.701 5.701 10 C 0.692 3.308 11 O -0.610 6.610 12 N -0.661 5.661 13 C 0.205 3.795 14 C -0.201 4.201 15 C -0.045 4.045 16 C -0.255 4.255 17 C 0.127 3.873 18 O -0.240 6.240 19 C -0.413 4.413 20 H 0.109 0.891 21 C -0.032 4.032 22 N -0.928 5.928 23 Si 1.028 2.972 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.246 1.246 27 C -0.217 4.217 28 C 0.487 3.513 29 O -0.571 6.571 30 H 0.024 0.976 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.021 0.979 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.423 0.577 42 H 0.430 0.570 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.124 0.876 46 H 0.272 0.728 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.834 -21.130 -19.553 32.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 C -0.225 4.225 4 N -0.345 5.345 5 C -0.025 4.025 6 C -0.157 4.157 7 C 0.016 3.984 8 H 0.108 0.892 9 N -0.360 5.360 10 C 0.392 3.608 11 O -0.487 6.487 12 N -0.311 5.311 13 C 0.109 3.891 14 C -0.221 4.221 15 C -0.064 4.064 16 C -0.275 4.275 17 C 0.076 3.924 18 O -0.147 6.147 19 C -0.489 4.489 20 H 0.126 0.874 21 C -0.228 4.228 22 N -0.567 5.567 23 Si 0.846 3.154 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.169 1.169 27 C -0.239 4.239 28 C 0.272 3.728 29 O -0.448 6.448 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.132 0.868 41 H 0.262 0.738 42 H 0.270 0.730 43 H 0.188 0.812 44 H 0.182 0.818 45 H 0.142 0.858 46 H 0.080 0.920 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.081 -20.405 -19.219 31.369 hybrid contribution -0.513 1.104 0.304 1.255 sum 13.568 -19.301 -18.916 30.239 Atomic orbital electron populations 1.22169 0.95680 1.02593 1.02042 1.21137 0.93873 0.92729 0.87368 1.22165 1.01555 0.96871 1.01891 1.48666 1.50808 1.30152 1.04831 1.22567 0.95944 0.85431 0.98588 1.23027 1.06990 0.93710 0.91992 1.21574 0.87689 0.93618 0.95515 0.89199 1.44467 1.11155 1.55164 1.25264 1.16300 0.83902 0.78988 0.81627 1.91072 1.29732 1.64813 1.63098 1.42161 1.09556 1.47686 1.31733 1.17067 0.94509 0.89194 0.88319 1.20869 1.00919 1.05595 0.94755 1.21067 0.95906 0.92395 0.97006 1.21324 0.97034 1.07376 1.01791 1.19671 0.88157 0.90337 0.94276 1.83989 1.36521 1.44762 1.49452 1.21950 1.01659 1.15466 1.09860 0.87392 1.26824 0.93408 1.00610 1.01966 1.70262 1.04086 1.41174 1.41138 0.84482 0.78598 0.76608 0.75759 1.18574 1.19781 1.16902 1.20048 1.01945 1.02085 0.99850 1.21862 0.79989 0.85231 0.85681 1.90766 1.40980 1.30659 1.82442 0.95632 0.89716 0.91236 0.84748 0.89685 0.95961 0.91716 0.88319 0.86623 0.84698 0.86812 0.73797 0.73035 0.81235 0.81774 0.85791 0.91955 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.20 71.98 0.66 -2.50 16 2 C 0.15 2.35 3.47 44.99 0.16 2.51 16 3 C -0.17 -3.39 9.20 71.98 0.66 -2.72 16 4 N -0.61 -10.33 2.83 -793.89 -2.25 -12.58 16 5 C 0.10 0.46 7.31 86.82 0.63 1.09 16 6 C -0.12 -0.73 6.78 31.65 0.21 -0.51 16 7 C 0.13 2.73 3.28 44.99 0.15 2.88 16 8 H 0.09 2.60 7.55 -2.38 -0.02 2.58 16 9 N -0.70 -14.74 5.10 -457.84 -2.34 -17.07 16 10 C 0.69 23.57 8.30 179.06 1.49 25.06 16 11 O -0.61 -30.09 13.71 -4.01 -0.05 -30.14 16 12 N -0.66 -19.00 5.35 -317.23 -1.70 -20.70 16 13 C 0.20 7.88 6.27 38.13 0.24 8.12 16 14 C -0.20 -6.13 9.96 22.42 0.22 -5.91 16 15 C -0.05 -1.53 10.03 22.23 0.22 -1.31 16 16 C -0.26 -11.82 9.13 22.41 0.20 -11.61 16 17 C 0.13 7.22 6.64 22.56 0.15 7.37 16 18 O -0.24 -16.48 9.76 -22.81 -0.22 -16.70 16 19 C -0.41 -26.23 9.44 67.92 0.64 -25.59 16 20 H 0.11 6.13 5.29 -2.91 -0.02 6.11 16 21 C -0.03 -1.96 5.49 84.83 0.47 -1.50 16 22 N -0.93 -62.90 13.67 21.61 0.30 -62.61 16 23 Si 1.03 46.01 29.55 68.60 2.03 48.04 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 27 C -0.22 -11.54 8.59 22.51 0.19 -11.35 16 28 C 0.49 14.03 7.05 87.90 0.62 14.65 16 29 O -0.57 -25.07 15.12 -3.02 -0.05 -25.12 16 30 H 0.02 0.73 6.80 -2.38 -0.02 0.72 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.13 0.90 8.07 -2.38 -0.02 0.88 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.02 0.68 6.77 -2.39 -0.02 0.66 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 0.04 8.14 -2.38 -0.02 0.03 16 38 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.13 -0.05 8.07 -2.39 -0.02 -0.07 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.42 4.25 8.65 -92.71 -0.80 3.45 16 42 H 0.43 7.03 8.83 -92.71 -0.82 6.22 16 43 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 44 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 45 H 0.12 5.71 5.71 -2.91 -0.02 5.69 16 46 H 0.27 16.80 8.31 -92.71 -0.77 16.03 16 47 H 0.08 5.18 6.45 -2.91 -0.02 5.16 16 Total: -1.00 -111.19 390.17 2.05 -109.14 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.59 Total: 29.06 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.92 Total: -1.32 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -5.98 Total: -112.96 kcal Atomic # 8 Polarization: -71.64 SS G_CDS: -0.32 Total: -71.96 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -111.19 2.05 -109.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265222813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.153 kcal (2) G-P(sol) polarization free energy of solvation -111.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds