Wall clock time and date at job start Wed Apr 1 2020 04:18:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52993 * 109.47363 * 2 1
4 4 N 1.46501 * 109.47071 * 120.00147 * 2 1 3
5 5 C 1.46821 * 124.33260 * 119.93213 * 4 2 1
6 6 C 1.54481 * 105.44587 * 197.00061 * 5 4 2
7 7 C 1.54630 * 101.79628 * 334.62930 * 6 5 4
8 8 H 1.09004 * 110.48522 * 143.58467 * 7 6 5
9 9 N 1.46497 * 110.48953 * 266.10175 * 7 6 5
10 10 C 1.34778 * 120.00249 * 205.00117 * 9 7 6
11 11 O 1.21593 * 119.99476 * 359.97438 * 10 9 7
12 12 N 1.34770 * 120.00147 * 180.02562 * 10 9 7
13 13 C 1.39945 * 120.00183 * 174.74578 * 12 10 9
14 14 C 1.38957 * 120.04007 * 146.42688 * 13 12 10
15 15 C 1.38153 * 120.07226 * 180.02562 * 14 13 12
16 16 C 1.38169 * 120.13561 * 359.97438 * 15 14 13
17 17 C 1.38910 * 120.06946 * 359.97438 * 16 15 14
18 18 O 1.35753 * 120.03015 * 180.02562 * 17 16 15
19 19 C 1.34834 * 117.00323 * 5.91452 * 18 17 16
20 20 H 1.08001 * 119.99663 * 5.40694 * 19 18 17
21 21 C 1.38654 * 119.99888 * 185.40674 * 19 18 17
22 22 N 1.31558 * 120.00153 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 119.99755 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.46909 * 90.00162 * 23 21 19
25 25 H 1.48502 * 109.46628 * 209.99819 * 23 21 19
26 26 H 1.48498 * 109.46946 * 330.00067 * 23 21 19
27 27 C 1.38706 * 120.03369 * 326.15846 * 13 12 10
28 28 C 1.34420 * 124.34964 * 299.97592 * 4 2 1
29 29 O 1.21277 * 124.93887 * 359.54525 * 28 4 2
30 30 H 1.09006 * 109.47222 * 300.00146 * 1 2 3
31 31 H 1.09005 * 109.46889 * 59.99804 * 1 2 3
32 32 H 1.09000 * 109.47449 * 179.97438 * 1 2 3
33 33 H 1.09006 * 109.47222 * 239.99854 * 2 1 3
34 34 H 1.09005 * 109.47277 * 299.99958 * 3 2 1
35 35 H 1.09004 * 109.47097 * 60.00299 * 3 2 1
36 36 H 1.09002 * 109.47369 * 180.02562 * 3 2 1
37 37 H 1.09007 * 110.23908 * 78.02356 * 5 4 2
38 38 H 1.09003 * 110.28962 * 316.00250 * 5 4 2
39 39 H 1.09000 * 110.97083 * 216.49512 * 6 5 4
40 40 H 1.08998 * 110.97139 * 92.76595 * 6 5 4
41 41 H 0.97000 * 119.99843 * 24.99332 * 9 7 6
42 42 H 0.97002 * 120.00458 * 354.73628 * 12 10 9
43 43 H 1.08001 * 119.96140 * 0.02562 * 14 13 12
44 44 H 1.07993 * 119.93472 * 180.02562 * 15 14 13
45 45 H 1.08005 * 119.96657 * 179.97438 * 16 15 14
46 46 H 0.96996 * 120.00386 * 180.02562 * 22 21 19
47 47 H 1.08003 * 120.06868 * 359.97014 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.8647 -1.8901 1.1723
6 6 2.7603 -2.4956 2.5896
7 6 2.4040 -1.2533 3.4386
8 1 1.7092 -1.5217 4.2345
9 7 3.6159 -0.6506 3.9992
10 6 3.5434 0.0856 5.1258
11 8 2.4719 0.2500 5.6766
12 7 4.6582 0.6405 5.6411
13 6 4.5683 1.4942 6.7464
14 6 5.5886 1.5214 7.6892
15 6 5.5003 2.3635 8.7808
16 6 4.3980 3.1816 8.9384
17 6 3.3752 3.1599 7.9988
18 8 2.2928 3.9643 8.1542
19 6 2.3273 4.8472 9.1727
20 1 3.2234 4.9520 9.7663
21 6 1.2123 5.6205 9.4580
22 7 0.1209 5.4931 8.7346
23 14 1.2604 6.8440 10.8687
24 1 1.7361 8.1585 10.3677
25 1 -0.1022 6.9954 11.4392
26 1 2.1856 6.3508 11.9203
27 6 3.4630 2.3183 6.8989
28 6 1.7483 -0.3081 2.4562
29 8 1.0774 0.6552 2.7609
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 1.6767 1.9563 -0.8900
35 1 1.6767 1.9563 0.8900
36 1 3.1300 1.4424 -0.0005
37 1 3.8974 -1.6186 0.9533
38 1 2.4950 -2.5989 0.4312
39 1 3.7133 -2.9219 2.9029
40 1 1.9669 -3.2415 2.6377
41 1 4.4706 -0.7816 3.5596
42 1 5.5230 0.4480 5.2461
43 1 6.4517 0.8834 7.5685
44 1 6.2948 2.3831 9.5120
45 1 4.3316 3.8386 9.7931
46 1 -0.6590 6.0343 8.9339
47 1 2.6709 2.3026 6.1649
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000265222813.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:43
Heat of formation + Delta-G solvation = -79.988880 kcal
Electronic energy + Delta-G solvation = -30447.041615 eV
Core-core repulsion = 26208.893162 eV
Total energy + Delta-G solvation = -4238.148453 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-42.16259 -41.30920 -40.35350 -38.37133 -37.62526 -36.66588 -35.60058 -34.36210
-34.20306 -31.23229 -30.62153 -29.72934 -28.19985 -28.02946 -27.31841 -24.31821
-23.46723 -23.18417 -22.73446 -22.14528 -20.11198 -19.89440 -19.84068 -18.95107
-18.15968 -17.46176 -16.94300 -16.81357 -16.68298 -16.39696 -16.05595 -15.96292
-15.56886 -15.53904 -15.38128 -15.14007 -14.77633 -14.58396 -14.41507 -14.27261
-14.14547 -13.87000 -13.59978 -13.22252 -13.08821 -12.94430 -12.85403 -12.66770
-12.54936 -12.45628 -12.36746 -12.17607 -12.13021 -12.11465 -11.63788 -11.35233
-11.31102 -11.05581 -10.76918 -10.05840 -9.71597 -9.31682 -8.84941 -8.46754
-6.17489 0.44509 0.71342 1.08666 1.32492 1.44266 1.52761 1.79555
1.90703 2.09863 2.18111 2.83611 3.09279 3.18177 3.34826 3.40517
3.58048 3.82992 3.95702 4.04991 4.14408 4.17100 4.26006 4.37743
4.43260 4.52263 4.62799 4.64624 4.69830 4.74231 4.79266 4.81408
4.83732 4.92918 5.01473 5.05591 5.09984 5.19398 5.23312 5.28267
5.36894 5.46478 5.63683 5.69964 5.74723 5.90620 6.02769 6.14167
6.22220 6.93780 6.96006 7.16892 7.44616 7.80807 8.77689
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.012628 B = 0.002620 C = 0.002275
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2216.832357 B =10685.552826 C =12307.419265
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.150 3.850
3 C -0.167 4.167
4 N -0.610 5.610
5 C 0.096 3.904
6 C -0.119 4.119
7 C 0.126 3.874
8 H 0.090 0.910
9 N -0.701 5.701
10 C 0.692 3.308
11 O -0.610 6.610
12 N -0.661 5.661
13 C 0.205 3.795
14 C -0.201 4.201
15 C -0.045 4.045
16 C -0.255 4.255
17 C 0.127 3.873
18 O -0.240 6.240
19 C -0.413 4.413
20 H 0.109 0.891
21 C -0.032 4.032
22 N -0.928 5.928
23 Si 1.028 2.972
24 H -0.261 1.261
25 H -0.273 1.273
26 H -0.246 1.246
27 C -0.217 4.217
28 C 0.487 3.513
29 O -0.571 6.571
30 H 0.024 0.976
31 H 0.084 0.916
32 H 0.069 0.931
33 H 0.135 0.865
34 H 0.084 0.916
35 H 0.021 0.979
36 H 0.064 0.936
37 H 0.099 0.901
38 H 0.116 0.884
39 H 0.135 0.865
40 H 0.114 0.886
41 H 0.423 0.577
42 H 0.430 0.570
43 H 0.170 0.830
44 H 0.165 0.835
45 H 0.124 0.876
46 H 0.272 0.728
47 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.834 -21.130 -19.553 32.856
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.049 3.951
3 C -0.225 4.225
4 N -0.345 5.345
5 C -0.025 4.025
6 C -0.157 4.157
7 C 0.016 3.984
8 H 0.108 0.892
9 N -0.360 5.360
10 C 0.392 3.608
11 O -0.487 6.487
12 N -0.311 5.311
13 C 0.109 3.891
14 C -0.221 4.221
15 C -0.064 4.064
16 C -0.275 4.275
17 C 0.076 3.924
18 O -0.147 6.147
19 C -0.489 4.489
20 H 0.126 0.874
21 C -0.228 4.228
22 N -0.567 5.567
23 Si 0.846 3.154
24 H -0.186 1.186
25 H -0.198 1.198
26 H -0.169 1.169
27 C -0.239 4.239
28 C 0.272 3.728
29 O -0.448 6.448
30 H 0.044 0.956
31 H 0.103 0.897
32 H 0.088 0.912
33 H 0.153 0.847
34 H 0.103 0.897
35 H 0.040 0.960
36 H 0.083 0.917
37 H 0.117 0.883
38 H 0.134 0.866
39 H 0.153 0.847
40 H 0.132 0.868
41 H 0.262 0.738
42 H 0.270 0.730
43 H 0.188 0.812
44 H 0.182 0.818
45 H 0.142 0.858
46 H 0.080 0.920
47 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 14.081 -20.405 -19.219 31.369
hybrid contribution -0.513 1.104 0.304 1.255
sum 13.568 -19.301 -18.916 30.239
Atomic orbital electron populations
1.22169 0.95680 1.02593 1.02042 1.21137 0.93873 0.92729 0.87368
1.22165 1.01555 0.96871 1.01891 1.48666 1.50808 1.30152 1.04831
1.22567 0.95944 0.85431 0.98588 1.23027 1.06990 0.93710 0.91992
1.21574 0.87689 0.93618 0.95515 0.89199 1.44467 1.11155 1.55164
1.25264 1.16300 0.83902 0.78988 0.81627 1.91072 1.29732 1.64813
1.63098 1.42161 1.09556 1.47686 1.31733 1.17067 0.94509 0.89194
0.88319 1.20869 1.00919 1.05595 0.94755 1.21067 0.95906 0.92395
0.97006 1.21324 0.97034 1.07376 1.01791 1.19671 0.88157 0.90337
0.94276 1.83989 1.36521 1.44762 1.49452 1.21950 1.01659 1.15466
1.09860 0.87392 1.26824 0.93408 1.00610 1.01966 1.70262 1.04086
1.41174 1.41138 0.84482 0.78598 0.76608 0.75759 1.18574 1.19781
1.16902 1.20048 1.01945 1.02085 0.99850 1.21862 0.79989 0.85231
0.85681 1.90766 1.40980 1.30659 1.82442 0.95632 0.89716 0.91236
0.84748 0.89685 0.95961 0.91716 0.88319 0.86623 0.84698 0.86812
0.73797 0.73035 0.81235 0.81774 0.85791 0.91955 0.89844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.16 9.20 71.98 0.66 -2.50 16
2 C 0.15 2.35 3.47 44.99 0.16 2.51 16
3 C -0.17 -3.39 9.20 71.98 0.66 -2.72 16
4 N -0.61 -10.33 2.83 -793.89 -2.25 -12.58 16
5 C 0.10 0.46 7.31 86.82 0.63 1.09 16
6 C -0.12 -0.73 6.78 31.65 0.21 -0.51 16
7 C 0.13 2.73 3.28 44.99 0.15 2.88 16
8 H 0.09 2.60 7.55 -2.38 -0.02 2.58 16
9 N -0.70 -14.74 5.10 -457.84 -2.34 -17.07 16
10 C 0.69 23.57 8.30 179.06 1.49 25.06 16
11 O -0.61 -30.09 13.71 -4.01 -0.05 -30.14 16
12 N -0.66 -19.00 5.35 -317.23 -1.70 -20.70 16
13 C 0.20 7.88 6.27 38.13 0.24 8.12 16
14 C -0.20 -6.13 9.96 22.42 0.22 -5.91 16
15 C -0.05 -1.53 10.03 22.23 0.22 -1.31 16
16 C -0.26 -11.82 9.13 22.41 0.20 -11.61 16
17 C 0.13 7.22 6.64 22.56 0.15 7.37 16
18 O -0.24 -16.48 9.76 -22.81 -0.22 -16.70 16
19 C -0.41 -26.23 9.44 67.92 0.64 -25.59 16
20 H 0.11 6.13 5.29 -2.91 -0.02 6.11 16
21 C -0.03 -1.96 5.49 84.83 0.47 -1.50 16
22 N -0.93 -62.90 13.67 21.61 0.30 -62.61 16
23 Si 1.03 46.01 29.55 68.60 2.03 48.04 16
24 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16
25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16
26 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16
27 C -0.22 -11.54 8.59 22.51 0.19 -11.35 16
28 C 0.49 14.03 7.05 87.90 0.62 14.65 16
29 O -0.57 -25.07 15.12 -3.02 -0.05 -25.12 16
30 H 0.02 0.73 6.80 -2.38 -0.02 0.72 16
31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16
32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
33 H 0.13 0.90 8.07 -2.38 -0.02 0.88 16
34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16
35 H 0.02 0.68 6.77 -2.39 -0.02 0.66 16
36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
37 H 0.10 0.04 8.14 -2.38 -0.02 0.03 16
38 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16
39 H 0.13 -0.05 8.07 -2.39 -0.02 -0.07 16
40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16
41 H 0.42 4.25 8.65 -92.71 -0.80 3.45 16
42 H 0.43 7.03 8.83 -92.71 -0.82 6.22 16
43 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16
44 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16
45 H 0.12 5.71 5.71 -2.91 -0.02 5.69 16
46 H 0.27 16.80 8.31 -92.71 -0.77 16.03 16
47 H 0.08 5.18 6.45 -2.91 -0.02 5.16 16
Total: -1.00 -111.19 390.17 2.05 -109.14
By element:
Atomic # 1 Polarization: 29.65 SS G_CDS: -0.59 Total: 29.06 kcal
Atomic # 6 Polarization: -8.25 SS G_CDS: 6.92 Total: -1.32 kcal
Atomic # 7 Polarization: -106.97 SS G_CDS: -5.98 Total: -112.96 kcal
Atomic # 8 Polarization: -71.64 SS G_CDS: -0.32 Total: -71.96 kcal
Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal
Total: -111.19 2.05 -109.14 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000265222813.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.153 kcal
(2) G-P(sol) polarization free energy of solvation -111.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.037 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.142 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.989 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds