Wall clock time and date at job start Wed Apr 1 2020 04:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47465 * 2 1 4 4 H 1.09012 * 109.47381 * 54.99673 * 3 2 1 5 5 C 1.50694 * 109.47379 * 174.99987 * 3 2 1 6 6 H 1.08005 * 120.00275 * 120.00156 * 5 3 2 7 7 C 1.37881 * 120.00114 * 299.99897 * 5 3 2 8 8 N 1.31514 * 119.99844 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47109 * 90.00027 * 9 7 5 11 11 H 1.48498 * 109.46867 * 209.99838 * 9 7 5 12 12 H 1.48495 * 109.47166 * 329.99828 * 9 7 5 13 13 N 1.46498 * 109.47022 * 295.00186 * 3 2 1 14 14 C 1.34776 * 120.00302 * 84.99835 * 13 3 2 15 15 O 1.21613 * 119.99731 * 0.02562 * 14 13 3 16 16 C 1.47293 * 120.00335 * 179.97438 * 14 13 3 17 17 C 1.36566 * 125.81041 * 179.97438 * 16 14 13 18 18 C 1.40055 * 106.92697 * 179.72557 * 17 16 14 19 19 C 1.36570 * 106.92710 * 0.40963 * 18 17 16 20 20 C 1.47293 * 125.80366 * 179.84723 * 19 18 17 21 21 O 1.21613 * 120.00192 * 359.71759 * 20 19 18 22 22 N 1.34777 * 119.99500 * 179.97438 * 20 19 18 23 23 C 1.46505 * 119.99724 * 179.72645 * 22 20 19 24 24 H 1.09002 * 109.47181 * 34.99973 * 23 22 20 25 25 C 1.52999 * 109.46989 * 275.00379 * 23 22 20 26 26 C 1.52994 * 109.47584 * 65.00041 * 25 23 22 27 27 C 1.52995 * 109.47024 * 155.00353 * 23 22 20 28 28 C 1.47201 * 109.46997 * 294.99852 * 27 23 22 29 29 N 9.43867 * 109.54743 * 315.43787 * 2 1 3 30 30 O 1.34549 * 108.38932 * 359.58740 * 19 18 17 31 31 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46859 * 300.00575 * 1 2 3 33 33 H 1.08995 * 109.47280 * 59.99853 * 1 2 3 34 34 H 1.08999 * 109.47174 * 239.99748 * 2 1 3 35 35 H 1.09007 * 109.46961 * 119.99992 * 2 1 3 36 36 H 0.96995 * 120.00309 * 179.97438 * 8 7 5 37 37 H 0.96998 * 119.99685 * 264.99385 * 13 3 2 38 38 H 1.08004 * 126.53213 * 359.94350 * 17 16 14 39 39 H 1.08001 * 126.53475 * 180.25176 * 18 17 16 40 40 H 0.97000 * 120.00483 * 359.73078 * 22 20 19 41 41 H 1.09005 * 109.47161 * 185.00054 * 25 23 22 42 42 H 1.09006 * 109.46999 * 304.99690 * 25 23 22 43 43 H 1.08999 * 109.47709 * 180.02562 * 26 25 23 44 44 H 1.09005 * 109.47093 * 299.99673 * 26 25 23 45 45 H 1.08998 * 109.47044 * 59.99565 * 26 25 23 46 46 H 1.09003 * 109.47445 * 55.00064 * 27 23 22 47 47 H 1.09002 * 109.47282 * 175.00106 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0049 0.8811 1.3818 10 1 6.4416 2.1141 2.0849 11 1 6.4395 -0.3099 2.1550 12 1 6.6136 0.8415 0.0279 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3413 2.6326 -0.4315 16 6 0.0458 3.3234 -2.6253 17 6 -1.1517 3.9323 -2.8711 18 6 -1.0961 4.4279 -4.1799 19 6 0.1295 4.0923 -4.6804 20 6 0.6248 4.4090 -6.0309 21 8 -0.0824 5.0177 -6.8108 22 7 1.8600 4.0196 -6.4041 23 6 2.3505 4.3293 -7.7494 24 1 1.9644 5.2994 -8.0625 25 6 1.8750 3.2519 -8.7261 26 6 0.3494 3.2962 -8.8314 27 6 3.8799 4.3684 -7.7381 28 6 4.3359 5.4827 -6.8912 29 7 4.6881 6.3374 -6.2412 30 8 0.8095 3.4282 -3.7282 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.8292 -0.0610 2.9500 37 1 2.2720 2.1231 -1.9977 38 1 -1.9817 4.0186 -2.1855 39 1 -1.8750 4.9697 -4.6958 40 1 2.4242 3.5342 -5.7820 41 1 2.3124 3.4330 -9.7080 42 1 2.1860 2.2714 -8.3651 43 1 0.0106 2.5283 -9.5269 44 1 -0.0880 3.1150 -7.8496 45 1 0.0385 4.2766 -9.1923 46 1 4.2645 3.4291 -7.3408 47 1 4.2472 4.5106 -8.7544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273841957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:24 Heat of formation + Delta-G solvation = -64.190561 kcal Electronic energy + Delta-G solvation = -30329.796508 eV Core-core repulsion = 26092.333121 eV Total energy + Delta-G solvation = -4237.463386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.92851 -41.10231 -40.57736 -38.31861 -37.09363 -36.82607 -34.55525 -34.18453 -33.57821 -32.94705 -31.59015 -30.98867 -29.00301 -26.33299 -25.36586 -24.67532 -23.29312 -22.38646 -21.85995 -21.56520 -21.20252 -20.05785 -19.18988 -18.36712 -17.87622 -17.83071 -17.54172 -17.29063 -16.51718 -16.28535 -16.05623 -15.61040 -15.29694 -15.20019 -15.06162 -14.67807 -14.44010 -14.33943 -14.18443 -14.14739 -13.91545 -13.85772 -13.70181 -13.52273 -13.18610 -13.03095 -12.93167 -12.71207 -12.52852 -12.37714 -12.19893 -12.09815 -11.94121 -11.73374 -11.61976 -11.43772 -11.24024 -11.16318 -11.09366 -10.55948 -10.26770 -9.98310 -9.69252 -8.18119 -6.35276 -0.47451 0.82254 1.20611 1.44482 1.45681 1.55404 1.81265 1.87823 1.97996 1.99027 2.11897 2.30172 2.50055 3.05112 3.11967 3.48591 3.72103 3.76418 3.88623 4.17031 4.20168 4.37054 4.43256 4.49206 4.55400 4.56338 4.63498 4.71691 4.74910 4.77745 4.92894 5.03765 5.05779 5.10020 5.13542 5.24104 5.28524 5.38243 5.41798 5.43343 5.51741 5.57339 5.59890 5.76350 5.86205 6.13002 6.27494 6.65653 6.68632 6.76247 6.90788 7.18537 7.38294 8.87257 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.002995 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.534541 B = 9347.427171 C =11205.186667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.260 1.260 13 N -0.687 5.687 14 C 0.583 3.417 15 O -0.552 6.552 16 C -0.044 4.044 17 C -0.137 4.137 18 C -0.127 4.127 19 C -0.062 4.062 20 C 0.610 3.390 21 O -0.528 6.528 22 N -0.709 5.709 23 C 0.145 3.855 24 H 0.087 0.913 25 C -0.125 4.125 26 C -0.151 4.151 27 C -0.029 4.029 28 C 0.226 3.774 29 N -0.504 5.504 30 O -0.150 6.150 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.266 0.734 37 H 0.406 0.594 38 H 0.176 0.824 39 H 0.187 0.813 40 H 0.415 0.585 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.031 0.969 45 H 0.047 0.953 46 H 0.149 0.851 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 2.850 -25.756 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.184 1.184 13 N -0.335 5.335 14 C 0.369 3.631 15 O -0.433 6.433 16 C -0.098 4.098 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.116 4.116 20 C 0.395 3.605 21 O -0.406 6.406 22 N -0.361 5.361 23 C 0.041 3.959 24 H 0.106 0.894 25 C -0.163 4.163 26 C -0.208 4.208 27 C -0.068 4.068 28 C -0.091 4.091 29 N -0.182 5.182 30 O -0.046 6.046 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.241 0.759 38 H 0.194 0.806 39 H 0.204 0.796 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.167 0.833 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.876 4.302 -24.541 24.986 hybrid contribution 0.813 -0.316 0.773 1.166 sum -1.063 3.986 -23.768 24.123 Atomic orbital electron populations 1.21711 0.96871 0.99547 1.00300 1.21795 0.93836 0.98650 1.01713 1.18545 0.93996 0.89498 0.80532 0.97532 1.21519 0.91177 1.39263 1.06885 0.91131 1.25700 1.03112 0.94282 0.94969 1.70022 1.37031 1.38093 1.09786 0.85416 0.79323 0.77390 0.78655 1.20756 1.20769 1.18412 1.46266 1.14486 1.54467 1.18251 1.16996 0.82909 0.78735 0.84508 1.90835 1.52600 1.61306 1.38577 1.22481 0.93042 1.06882 0.87392 1.22168 0.97640 0.98524 0.97431 1.22166 0.97318 1.01229 0.94053 1.22707 0.94242 1.03464 0.91161 1.16456 0.82592 0.79007 0.82437 1.90872 1.57281 1.41704 1.50780 1.46086 1.15211 1.57686 1.17109 1.21311 0.92283 1.01110 0.81214 0.89445 1.21955 0.95600 0.98676 1.00080 1.21810 0.96785 1.01438 1.00801 1.20071 0.93177 0.92580 1.00990 1.29711 0.92068 0.94244 0.93045 1.81076 1.10863 1.14008 1.12245 1.84021 1.41367 1.59221 1.19956 0.93224 0.95119 0.94006 0.93764 0.90557 0.92457 0.75929 0.80617 0.79610 0.74811 0.86989 0.89549 0.92359 0.94952 0.93351 0.83300 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.72 5.45 30.59 0.17 -5.55 16 3 C 0.28 13.72 2.24 44.24 0.10 13.82 16 4 H 0.01 0.40 7.58 -2.38 -0.02 0.38 16 5 C -0.55 -28.28 8.73 25.60 0.22 -28.05 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -50.58 11.29 21.45 0.24 -50.34 16 9 Si 0.97 41.10 29.54 68.60 2.03 43.12 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 13 N -0.69 -27.98 5.02 -449.52 -2.26 -30.23 16 14 C 0.58 23.08 6.37 86.62 0.55 23.63 16 15 O -0.55 -25.29 14.00 -4.07 -0.06 -25.35 16 16 C -0.04 -1.38 7.14 24.26 0.17 -1.21 16 17 C -0.14 -3.73 10.60 22.32 0.24 -3.49 16 18 C -0.13 -2.99 10.60 22.32 0.24 -2.75 16 19 C -0.06 -1.49 7.14 24.26 0.17 -1.31 16 20 C 0.61 12.69 6.37 86.62 0.55 13.24 16 21 O -0.53 -12.85 14.00 -4.07 -0.06 -12.90 16 22 N -0.71 -9.61 4.73 -445.93 -2.11 -11.72 16 23 C 0.15 1.07 2.23 44.99 0.10 1.17 16 24 H 0.09 0.97 7.57 -2.39 -0.02 0.95 16 25 C -0.13 -0.58 5.61 30.59 0.17 -0.41 16 26 C -0.15 -1.87 8.51 71.98 0.61 -1.26 16 27 C -0.03 -0.05 5.25 28.79 0.15 0.10 16 28 C 0.23 3.26 15.12 89.51 1.35 4.61 16 29 N -0.50 -12.39 18.50 19.93 0.37 -12.02 16 30 O -0.15 -4.02 10.14 -7.39 -0.08 -4.10 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.42 7.84 -2.38 -0.02 1.40 16 33 H 0.04 1.74 5.64 -2.39 -0.01 1.72 16 34 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 4.04 5.95 -2.38 -0.01 4.03 16 36 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.41 14.32 8.30 -92.71 -0.77 13.55 16 38 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.42 4.75 8.36 -92.71 -0.78 3.98 16 41 H 0.11 -0.12 8.14 -2.38 -0.02 -0.13 16 42 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.03 0.56 5.65 -2.38 -0.01 0.55 16 45 H 0.05 0.72 7.84 -2.39 -0.02 0.70 16 46 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.17 -1.05 8.14 -2.39 -0.02 -1.07 16 Total: -1.00 -75.26 397.59 3.43 -71.82 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.51 Total: 22.53 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.86 Total: 9.19 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.75 Total: -104.31 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.19 Total: -42.35 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -75.26 3.43 -71.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273841957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.634 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds