Wall clock time and date at job start Wed Apr 1 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46671 * 2 1 4 4 H 1.09000 * 109.47070 * 55.00570 * 3 2 1 5 5 C 1.50701 * 109.46644 * 175.00014 * 3 2 1 6 6 H 1.08001 * 120.00004 * 119.99957 * 5 3 2 7 7 C 1.37883 * 119.99868 * 300.00207 * 5 3 2 8 8 N 1.31520 * 119.99831 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00014 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47075 * 90.00348 * 9 7 5 11 11 H 1.48502 * 109.47031 * 209.99853 * 9 7 5 12 12 H 1.48497 * 109.47193 * 329.99970 * 9 7 5 13 13 N 1.46501 * 109.47342 * 294.99554 * 3 2 1 14 14 C 1.34781 * 119.99569 * 85.00501 * 13 3 2 15 15 O 1.21594 * 119.99789 * 359.97438 * 14 13 3 16 16 N 1.34769 * 119.99631 * 179.97438 * 14 13 3 17 17 C 1.40106 * 119.99909 * 179.97438 * 16 14 13 18 18 N 1.31207 * 125.89048 * 0.03103 * 17 16 14 19 19 N 1.40086 * 108.21713 * 179.97438 * 18 17 16 20 20 C 1.39786 * 126.04128 * 179.97438 * 19 18 17 21 21 N 1.32322 * 119.70604 * 155.02522 * 20 19 18 22 22 C 1.31883 * 121.66997 * 180.02562 * 21 20 19 23 23 C 1.38145 * 120.89731 * 359.97438 * 22 21 20 24 24 C 1.38758 * 119.31596 * 0.25963 * 23 22 21 25 25 C 1.38621 * 118.46600 * 359.47467 * 24 23 22 26 26 F 1.35098 * 120.47103 * 180.23787 * 25 24 23 27 27 C 1.35864 * 107.91678 * 0.26112 * 19 18 17 28 28 C 1.35205 * 107.72805 * 359.57522 * 27 19 18 29 29 C 1.50697 * 126.03465 * 180.18303 * 28 27 19 30 30 H 1.08997 * 109.46940 * 60.00272 * 1 2 3 31 31 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46900 * 299.99728 * 1 2 3 33 33 H 1.09000 * 109.46511 * 240.00165 * 2 1 3 34 34 H 1.08993 * 109.46747 * 120.00194 * 2 1 3 35 35 H 0.96997 * 119.99869 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00134 * 265.00753 * 13 3 2 37 37 H 0.97003 * 120.00557 * 0.02562 * 16 14 13 38 38 H 1.08008 * 119.55057 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.33877 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.76642 * 179.72905 * 24 23 22 41 41 H 1.08000 * 126.13152 * 179.71820 * 27 19 18 42 42 H 1.09000 * 109.47054 * 270.28210 * 29 28 27 43 43 H 1.08996 * 109.47288 * 30.28601 * 29 28 27 44 44 H 1.09005 * 109.46574 * 150.28717 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8804 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8094 2.6395 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6318 -0.4320 16 7 0.0788 3.2674 -2.5184 17 6 -1.1868 3.8562 -2.6383 18 7 -2.1113 3.8888 -1.7078 19 7 -3.2249 4.5666 -2.2205 20 6 -4.4217 4.8137 -1.5416 21 7 -5.1785 5.8387 -1.8986 22 6 -6.3143 6.1077 -1.2847 23 6 -6.7587 5.3223 -0.2388 24 6 -5.9932 4.2400 0.1710 25 6 -4.8070 3.9789 -0.4971 26 9 -4.0326 2.9329 -0.1349 27 6 -2.9387 4.9359 -3.4963 28 6 -1.6847 4.5143 -3.7753 29 6 -0.9528 4.7104 -5.0780 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.8770 0.4825 2.1132 36 1 2.2720 2.1231 -1.9978 37 1 0.6983 3.2931 -3.2644 38 1 -6.9055 6.9531 -1.6047 39 1 -7.6901 5.5511 0.2578 40 1 -6.3161 3.6130 0.9889 41 1 -3.5943 5.4721 -4.1663 42 1 -1.1570 3.8687 -5.7397 43 1 -1.2906 5.6334 -5.5491 44 1 0.1187 4.7709 -4.8871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364913756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:13 Heat of formation + Delta-G solvation = 69.495620 kcal Electronic energy + Delta-G solvation = -30449.265183 eV Core-core repulsion = 26126.431311 eV Total energy + Delta-G solvation = -4322.833872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.91076 -41.70099 -40.29799 -39.39216 -35.90358 -34.68126 -33.36192 -32.63564 -32.31979 -31.64616 -31.17565 -29.37898 -27.40367 -26.90676 -24.10208 -23.94556 -22.76162 -22.18177 -20.74034 -20.16313 -19.65842 -18.52561 -17.98828 -17.74396 -17.30107 -16.58612 -16.23085 -16.08728 -15.62369 -15.45167 -15.11045 -14.57590 -14.25290 -14.19459 -13.88420 -13.75495 -13.52138 -13.35297 -13.18680 -13.04753 -12.89835 -12.65337 -12.49800 -12.17549 -11.96974 -11.74951 -11.19755 -10.99614 -10.83626 -10.61978 -10.52981 -10.27520 -10.20034 -9.87737 -9.59307 -9.37888 -9.33022 -9.17599 -8.81018 -8.72158 -8.11916 -7.86914 -6.18787 -4.20960 0.28287 0.60865 1.79267 1.93584 2.64086 3.01338 3.21751 3.26932 3.38718 3.45773 3.67450 3.90195 3.93068 4.21682 4.34805 4.44020 4.46190 4.68574 4.76261 5.06958 5.07438 5.15427 5.22073 5.36246 5.45594 5.48642 5.54731 5.66242 5.89331 5.96720 6.05195 6.10583 6.14664 6.24882 6.63887 6.74088 6.81781 6.89137 6.91848 6.96529 7.08613 7.24251 7.34944 7.43973 7.55402 7.81944 8.31005 8.65054 8.80697 9.16018 9.42806 10.93212 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002987 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.619891 B = 9371.929425 C =10792.728641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.139 4.139 3 C 0.261 3.739 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.893 5.893 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.711 5.711 14 C 0.686 3.314 15 O -0.544 6.544 16 N -0.653 5.653 17 C 0.342 3.658 18 N -0.247 5.247 19 N -0.337 5.337 20 C 0.352 3.648 21 N -0.481 5.481 22 C 0.116 3.884 23 C -0.159 4.159 24 C -0.093 4.093 25 C 0.065 3.935 26 F -0.099 7.099 27 C 0.088 3.912 28 C -0.243 4.243 29 C -0.072 4.072 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.267 0.733 36 H 0.392 0.608 37 H 0.413 0.587 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.525 9.533 -11.292 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.157 3.843 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.363 5.363 14 C 0.385 3.615 15 O -0.416 6.416 16 N -0.307 5.307 17 C 0.079 3.921 18 N -0.074 5.074 19 N -0.116 5.116 20 C 0.123 3.877 21 N -0.194 5.194 22 C -0.042 4.042 23 C -0.180 4.180 24 C -0.120 4.120 25 C 0.041 3.959 26 F -0.077 7.077 27 C -0.052 4.052 28 C -0.256 4.256 29 C -0.130 4.130 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.225 0.775 37 H 0.250 0.750 38 H 0.190 0.810 39 H 0.168 0.832 40 H 0.173 0.827 41 H 0.198 0.802 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.018 9.555 -9.702 27.609 hybrid contribution 0.330 -0.914 -0.014 0.972 sum -23.688 8.640 -9.716 27.021 Atomic orbital electron populations 1.21844 0.96732 0.98824 1.02471 1.22309 0.94495 0.99978 1.00996 1.19069 0.95372 0.88186 0.81670 0.93217 1.21039 0.88546 1.39736 1.07862 0.90151 1.24809 0.94862 0.95138 0.97635 1.69866 1.08674 1.44583 1.29837 0.86916 0.81065 0.79987 0.80872 1.20219 1.22195 1.18341 1.45379 1.13285 1.58867 1.18813 1.16149 0.83783 0.79208 0.82313 1.91029 1.51172 1.62431 1.37002 1.42266 1.12851 1.58456 1.17131 1.19045 0.86809 0.94273 0.91923 1.78572 0.92442 1.18815 1.17524 1.45361 1.10683 1.45433 1.10081 1.17675 0.86168 0.91874 0.91988 1.67016 1.06854 1.14750 1.30788 1.22587 0.90759 0.98779 0.92095 1.22069 1.01675 0.95551 0.98686 1.21690 0.92238 0.98435 0.99651 1.18263 0.91887 0.88344 0.97449 1.91711 1.73045 1.52820 1.90090 1.22437 0.96361 0.99614 0.86777 1.19884 0.96124 1.11408 0.98164 1.20064 0.99106 1.01925 0.91888 0.92915 0.95203 0.92829 0.92341 0.92803 0.92294 0.77518 0.75023 0.81019 0.83165 0.82660 0.80189 0.91640 0.91412 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.14 -3.18 5.11 -26.73 -0.14 -3.32 16 3 C 0.26 6.30 1.83 -69.08 -0.13 6.17 16 4 H 0.05 1.35 6.63 -51.93 -0.34 1.00 16 5 C -0.53 -14.48 9.31 -34.44 -0.32 -14.80 16 6 H 0.08 2.27 7.98 -52.49 -0.42 1.86 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 9 Si 0.88 22.15 24.41 -169.99 -4.15 18.00 16 10 H -0.28 -6.69 6.83 56.52 0.39 -6.31 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 13 N -0.71 -14.30 5.03 -59.81 -0.30 -14.61 16 14 C 0.69 13.81 7.10 -86.92 -0.62 13.19 16 15 O -0.54 -13.09 12.19 5.28 0.06 -13.02 16 16 N -0.65 -10.29 5.45 -15.51 -0.08 -10.38 16 17 C 0.34 5.62 7.77 -154.42 -1.20 4.42 16 18 N -0.25 -4.69 9.35 31.44 0.29 -4.40 16 19 N -0.34 -5.25 3.77 -12.07 -0.05 -5.29 16 20 C 0.35 4.89 7.41 -154.31 -1.14 3.74 16 21 N -0.48 -5.33 10.01 -12.24 -0.12 -5.45 16 22 C 0.12 0.83 11.17 -17.56 -0.20 0.64 16 23 C -0.16 -0.99 10.10 -39.42 -0.40 -1.39 16 24 C -0.09 -0.84 10.16 -39.25 -0.40 -1.23 16 25 C 0.07 0.88 7.30 -39.10 -0.29 0.60 16 26 F -0.10 -1.71 15.90 2.25 0.04 -1.68 16 27 C 0.09 1.09 11.10 -16.85 -0.19 0.91 16 28 C -0.24 -3.04 6.12 -104.85 -0.64 -3.68 16 29 C -0.07 -0.59 10.21 36.00 0.37 -0.23 16 30 H 0.05 1.14 5.64 -51.93 -0.29 0.85 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 1.29 3.22 -51.93 -0.17 1.12 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.39 6.74 8.55 -40.82 -0.35 6.39 16 37 H 0.41 4.79 8.22 -40.82 -0.34 4.45 16 38 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 39 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -37.03 368.07 -8.33 -45.37 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.28 Total: 7.31 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -5.06 Total: 4.43 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: 0.51 Total: -65.95 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.06 Total: -13.02 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.15 Total: 18.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.03 -8.33 -45.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364913756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.861 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds