Wall clock time and date at job start Wed Apr 1 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46671 * 2 1 4 4 H 1.09000 * 109.47070 * 55.00570 * 3 2 1 5 5 C 1.50701 * 109.46644 * 175.00014 * 3 2 1 6 6 H 1.08001 * 120.00004 * 119.99957 * 5 3 2 7 7 C 1.37883 * 119.99868 * 300.00207 * 5 3 2 8 8 N 1.31520 * 119.99831 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00014 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47075 * 90.00348 * 9 7 5 11 11 H 1.48502 * 109.47031 * 209.99853 * 9 7 5 12 12 H 1.48497 * 109.47193 * 329.99970 * 9 7 5 13 13 N 1.46501 * 109.47342 * 294.99554 * 3 2 1 14 14 C 1.34781 * 119.99569 * 85.00501 * 13 3 2 15 15 O 1.21594 * 119.99789 * 359.97438 * 14 13 3 16 16 N 1.34769 * 119.99631 * 179.97438 * 14 13 3 17 17 C 1.40106 * 119.99909 * 179.97438 * 16 14 13 18 18 N 1.31207 * 125.89048 * 0.03103 * 17 16 14 19 19 N 1.40086 * 108.21713 * 179.97438 * 18 17 16 20 20 C 1.39786 * 126.04128 * 179.97438 * 19 18 17 21 21 N 1.32322 * 119.70604 * 155.02522 * 20 19 18 22 22 C 1.31883 * 121.66997 * 180.02562 * 21 20 19 23 23 C 1.38145 * 120.89731 * 359.97438 * 22 21 20 24 24 C 1.38758 * 119.31596 * 0.25963 * 23 22 21 25 25 C 1.38621 * 118.46600 * 359.47467 * 24 23 22 26 26 F 1.35098 * 120.47103 * 180.23787 * 25 24 23 27 27 C 1.35864 * 107.91678 * 0.26112 * 19 18 17 28 28 C 1.35205 * 107.72805 * 359.57522 * 27 19 18 29 29 C 1.50697 * 126.03465 * 180.18303 * 28 27 19 30 30 H 1.08997 * 109.46940 * 60.00272 * 1 2 3 31 31 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46900 * 299.99728 * 1 2 3 33 33 H 1.09000 * 109.46511 * 240.00165 * 2 1 3 34 34 H 1.08993 * 109.46747 * 120.00194 * 2 1 3 35 35 H 0.96997 * 119.99869 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00134 * 265.00753 * 13 3 2 37 37 H 0.97003 * 120.00557 * 0.02562 * 16 14 13 38 38 H 1.08008 * 119.55057 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.33877 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.76642 * 179.72905 * 24 23 22 41 41 H 1.08000 * 126.13152 * 179.71820 * 27 19 18 42 42 H 1.09000 * 109.47054 * 270.28210 * 29 28 27 43 43 H 1.08996 * 109.47288 * 30.28601 * 29 28 27 44 44 H 1.09005 * 109.46574 * 150.28717 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8804 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8094 2.6395 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6318 -0.4320 16 7 0.0788 3.2674 -2.5184 17 6 -1.1868 3.8562 -2.6383 18 7 -2.1113 3.8888 -1.7078 19 7 -3.2249 4.5666 -2.2205 20 6 -4.4217 4.8137 -1.5416 21 7 -5.1785 5.8387 -1.8986 22 6 -6.3143 6.1077 -1.2847 23 6 -6.7587 5.3223 -0.2388 24 6 -5.9932 4.2400 0.1710 25 6 -4.8070 3.9789 -0.4971 26 9 -4.0326 2.9329 -0.1349 27 6 -2.9387 4.9359 -3.4963 28 6 -1.6847 4.5143 -3.7753 29 6 -0.9528 4.7104 -5.0780 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.8770 0.4825 2.1132 36 1 2.2720 2.1231 -1.9978 37 1 0.6983 3.2931 -3.2644 38 1 -6.9055 6.9531 -1.6047 39 1 -7.6901 5.5511 0.2578 40 1 -6.3161 3.6130 0.9889 41 1 -3.5943 5.4721 -4.1663 42 1 -1.1570 3.8687 -5.7397 43 1 -1.2906 5.6334 -5.5491 44 1 0.1187 4.7709 -4.8871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364913756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:12 Heat of formation + Delta-G solvation = 43.153002 kcal Electronic energy + Delta-G solvation = -30450.407484 eV Core-core repulsion = 26126.431311 eV Total energy + Delta-G solvation = -4323.976174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.97979 -42.75392 -41.30466 -40.74087 -37.55841 -36.10445 -34.57227 -34.24646 -33.45598 -33.05302 -32.35739 -30.42131 -29.33674 -27.68134 -25.32221 -24.71859 -24.44751 -23.47748 -22.13263 -21.42717 -21.28694 -19.80888 -19.22370 -18.70833 -18.18040 -18.16513 -17.79465 -17.34856 -16.95307 -16.65950 -16.23054 -15.98549 -15.91712 -15.18765 -15.10418 -14.96276 -14.69350 -14.61355 -14.33529 -14.20781 -13.98613 -13.87113 -13.68822 -13.57444 -13.40775 -13.03714 -12.85169 -12.80718 -12.49996 -12.33626 -11.87699 -11.73761 -11.40531 -11.25806 -11.06203 -11.01602 -10.93737 -10.86924 -10.35044 -10.00487 -9.74763 -8.96029 -8.39297 -6.44089 -0.51985 -0.10382 0.79793 0.98614 1.25289 1.33843 1.44622 1.48378 1.71664 2.25056 2.38776 2.49125 2.82621 2.96629 3.15266 3.30048 3.47317 3.64580 3.87556 4.08475 4.16443 4.21168 4.28904 4.29937 4.41886 4.46494 4.54584 4.72871 4.79057 4.86633 4.91756 4.96018 4.97262 5.07681 5.13173 5.18981 5.29729 5.38347 5.41180 5.47786 5.62016 5.67204 5.77233 6.03089 6.17594 6.41900 6.57959 6.71833 7.13732 7.23762 7.61767 8.75737 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002987 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.619891 B = 9371.929425 C =10792.728641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 C 0.270 3.730 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.932 3.068 10 H -0.257 1.257 11 H -0.292 1.292 12 H -0.267 1.267 13 N -0.707 5.707 14 C 0.688 3.312 15 O -0.585 6.585 16 N -0.636 5.636 17 C 0.316 3.684 18 N -0.306 5.306 19 N -0.344 5.344 20 C 0.317 3.683 21 N -0.491 5.491 22 C 0.123 3.877 23 C -0.132 4.132 24 C -0.090 4.090 25 C 0.018 3.982 26 F -0.135 7.135 27 C 0.089 3.911 28 C -0.239 4.239 29 C -0.069 4.069 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.271 0.729 36 H 0.407 0.593 37 H 0.433 0.567 38 H 0.219 0.781 39 H 0.201 0.799 40 H 0.176 0.824 41 H 0.215 0.785 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.756 10.729 -12.688 31.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.035 0.965 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.166 4.166 8 N -0.570 5.570 9 Si 0.759 3.241 10 H -0.183 1.183 11 H -0.219 1.219 12 H -0.192 1.192 13 N -0.360 5.360 14 C 0.387 3.613 15 O -0.460 6.460 16 N -0.291 5.291 17 C 0.055 3.945 18 N -0.133 5.133 19 N -0.124 5.124 20 C 0.090 3.910 21 N -0.204 5.204 22 C -0.036 4.036 23 C -0.152 4.152 24 C -0.117 4.117 25 C -0.006 4.006 26 F -0.114 7.114 27 C -0.051 4.051 28 C -0.251 4.251 29 C -0.127 4.127 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.242 0.758 37 H 0.273 0.727 38 H 0.236 0.764 39 H 0.218 0.782 40 H 0.193 0.807 41 H 0.231 0.769 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.240 10.761 -11.171 31.346 hybrid contribution 1.095 -1.081 0.395 1.589 sum -26.145 9.680 -10.777 29.889 Atomic orbital electron populations 1.21686 0.95666 1.00054 1.01133 1.22218 0.95281 0.98657 1.01221 1.18661 0.93225 0.89177 0.82424 0.96451 1.21237 0.89944 1.38551 1.07114 0.92015 1.25456 0.95669 0.95868 0.99620 1.69958 1.10059 1.46110 1.30847 0.86110 0.79188 0.80104 0.78676 1.18298 1.21883 1.19164 1.45033 1.13926 1.58974 1.18114 1.16192 0.83093 0.79021 0.82945 1.91011 1.52258 1.63836 1.38928 1.41853 1.13406 1.57556 1.16318 1.19410 0.86503 0.95287 0.93307 1.78398 0.94236 1.20613 1.20070 1.45457 1.10552 1.45289 1.11069 1.17937 0.86551 0.93406 0.93106 1.67094 1.07944 1.13861 1.31511 1.23549 0.89422 0.99381 0.91238 1.22646 1.02224 0.93044 0.97307 1.22089 0.90656 0.99430 0.99496 1.18866 0.93677 0.88655 0.99407 1.91604 1.74467 1.54656 1.90676 1.23074 0.96793 0.99096 0.86095 1.20296 0.96168 1.10188 0.98492 1.20190 0.99007 1.03555 0.89911 0.93456 0.92505 0.95057 0.90854 0.93649 0.92004 0.75782 0.72702 0.76450 0.78204 0.80698 0.76851 0.90335 0.89227 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.51 71.98 0.61 -4.93 16 2 C -0.14 -6.16 5.11 30.60 0.16 -6.00 16 3 C 0.27 13.34 1.83 44.25 0.08 13.42 16 4 H 0.02 0.99 6.63 -2.39 -0.02 0.97 16 5 C -0.53 -29.37 9.31 25.60 0.24 -29.13 16 6 H 0.06 3.58 7.98 -2.91 -0.02 3.56 16 7 C 0.03 1.95 5.45 84.66 0.46 2.41 16 8 N -0.93 -56.36 13.96 21.45 0.30 -56.06 16 9 Si 0.93 46.21 24.41 68.60 1.67 47.89 16 10 H -0.26 -11.95 6.83 99.48 0.68 -11.27 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.27 -13.50 6.53 99.48 0.65 -12.85 16 13 N -0.71 -29.01 5.03 -461.40 -2.32 -31.33 16 14 C 0.69 28.61 7.10 179.06 1.27 29.88 16 15 O -0.59 -29.61 12.19 -4.01 -0.05 -29.66 16 16 N -0.64 -20.42 5.45 -321.24 -1.75 -22.18 16 17 C 0.32 10.66 7.77 133.37 1.04 11.69 16 18 N -0.31 -12.26 9.35 -54.44 -0.51 -12.77 16 19 N -0.34 -11.05 3.77 -192.10 -0.72 -11.78 16 20 C 0.32 8.92 7.41 132.82 0.98 9.91 16 21 N -0.49 -10.02 10.01 -192.63 -1.93 -11.95 16 22 C 0.12 1.29 11.17 84.66 0.95 2.23 16 23 C -0.13 -1.10 10.10 22.37 0.23 -0.88 16 24 C -0.09 -1.49 10.16 22.49 0.23 -1.26 16 25 C 0.02 0.52 7.30 22.58 0.16 0.68 16 26 F -0.14 -5.14 15.90 44.97 0.72 -4.43 16 27 C 0.09 2.16 11.10 83.37 0.92 3.08 16 28 C -0.24 -5.80 6.12 -20.02 -0.12 -5.93 16 29 C -0.07 -0.98 10.21 71.24 0.73 -0.25 16 30 H 0.05 2.08 5.64 -2.39 -0.01 2.07 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.03 1.46 7.84 -2.39 -0.02 1.45 16 33 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.05 2.14 3.22 -2.39 -0.01 2.14 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.41 14.07 8.55 -92.71 -0.79 13.27 16 37 H 0.43 9.87 8.22 -92.71 -0.76 9.11 16 38 H 0.22 0.20 8.06 -2.91 -0.02 0.18 16 39 H 0.20 -0.27 8.06 -2.91 -0.02 -0.30 16 40 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.21 3.38 8.06 -2.91 -0.02 3.35 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.93 7.69 -2.38 -0.02 0.91 16 Total: -1.00 -87.43 368.07 2.79 -84.64 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.56 Total: 22.68 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 7.94 Total: 24.93 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -6.93 Total: -146.05 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.72 Total: -4.43 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.89 kcal Total: -87.43 2.79 -84.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364913756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.789 kcal (2) G-P(sol) polarization free energy of solvation -87.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds