Wall clock time and date at job start Wed Apr 1 2020 04:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 H 1.09004 * 109.44140 * 305.06089 * 3 2 1 5 5 O 1.42932 * 109.44545 * 64.99652 * 3 2 1 6 6 C 1.35998 * 116.99913 * 74.54731 * 5 3 2 7 7 C 1.38446 * 120.44982 * 211.24306 * 6 5 3 8 8 C 1.38287 * 119.91886 * 181.86893 * 7 6 5 9 9 C 1.50701 * 119.88496 * 179.72779 * 8 7 6 10 10 H 1.09002 * 109.47060 * 19.72677 * 9 8 7 11 11 C 1.52997 * 109.47212 * 259.72622 * 9 8 7 12 12 N 1.46500 * 109.47209 * 139.72655 * 9 8 7 13 13 C 1.34777 * 120.00075 * 204.99847 * 12 9 8 14 14 O 1.21587 * 119.99681 * 0.02562 * 13 12 9 15 15 N 1.34775 * 120.00044 * 179.97438 * 13 12 9 16 16 C 1.46500 * 119.99839 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46973 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00019 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99793 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00489 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99824 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46928 * 60.00132 * 21 19 17 23 23 H 1.48498 * 109.47097 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46872 * 299.99994 * 21 19 17 25 25 C 1.38285 * 120.23284 * 359.45027 * 8 7 6 26 26 C 1.38265 * 120.17312 * 359.97153 * 25 8 7 27 27 C 1.38519 * 119.88351 * 359.97438 * 26 25 8 28 28 N 1.40150 * 120.64642 * 180.17497 * 27 26 25 29 29 C 1.34954 * 119.23917 * 169.05304 * 28 27 26 30 30 O 1.21295 * 120.15259 * 174.21541 * 29 28 27 31 31 H 1.09000 * 109.47163 * 300.00003 * 1 2 3 32 32 H 1.09001 * 109.46947 * 60.00191 * 1 2 3 33 33 H 1.08996 * 109.46996 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47157 * 239.99440 * 2 1 3 35 35 H 1.09005 * 109.47424 * 119.99753 * 2 1 3 36 36 H 1.08008 * 120.03935 * 1.59408 * 7 6 5 37 37 H 1.09002 * 109.47153 * 299.99998 * 11 9 8 38 38 H 1.08998 * 109.47533 * 59.99628 * 11 9 8 39 39 H 1.08996 * 109.47853 * 179.97438 * 11 9 8 40 40 H 0.96997 * 120.00274 * 24.99818 * 12 9 8 41 41 H 0.96997 * 120.00305 * 0.02562 * 15 13 12 42 42 H 1.08998 * 109.47120 * 300.00352 * 16 15 13 43 43 H 1.09002 * 109.47331 * 59.99749 * 16 15 13 44 44 H 0.96998 * 120.00287 * 179.97438 * 20 19 17 45 45 H 1.08004 * 119.91386 * 179.97438 * 25 8 7 46 46 H 1.08001 * 120.06169 * 179.97438 * 26 25 8 47 47 H 0.97001 * 120.38270 * 349.02428 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9814 -0.8414 5 8 1.6615 2.0810 1.2215 6 6 2.3516 1.7321 2.3402 7 6 1.7330 1.7445 3.5787 8 6 2.4554 1.4251 4.7138 9 6 1.7827 1.4447 6.0622 10 1 0.7026 1.3808 5.9303 11 6 2.1319 2.7459 6.7874 12 7 2.2462 0.3038 6.8558 13 6 1.4720 -0.1896 7.8425 14 8 0.3887 0.3118 8.0736 15 7 1.8981 -1.2396 8.5722 16 6 1.0563 -1.7763 9.6444 17 6 1.7579 -2.9374 10.3004 18 1 2.7332 -3.2451 9.9531 19 6 1.1548 -3.6070 11.3439 20 7 -0.0330 -3.2327 11.7665 21 14 2.0249 -5.0459 12.1576 22 1 3.3173 -4.5856 12.7259 23 1 1.1716 -5.5900 13.2443 24 1 2.2772 -6.1062 11.1490 25 6 3.7914 1.0821 4.6153 26 6 4.4130 1.0560 3.3805 27 6 3.6947 1.3738 2.2394 28 7 4.3078 1.3489 0.9794 29 6 3.5423 1.4428 -0.1281 30 8 4.0605 1.5286 -1.2214 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.6885 2.0076 3.6587 37 1 3.2120 2.8098 6.9192 38 1 1.7872 3.5948 6.1970 39 1 1.6451 2.7604 7.7625 40 1 3.1102 -0.0964 6.6712 41 1 2.7621 -1.6398 8.3876 42 1 0.8714 -0.9984 10.3851 43 1 0.1074 -2.1134 9.2271 44 1 -0.4574 -3.7040 12.5004 45 1 4.3508 0.8340 5.5052 46 1 5.4566 0.7883 3.3056 47 1 5.2713 1.2656 0.9041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:08 Heat of formation + Delta-G solvation = -83.682416 kcal Electronic energy + Delta-G solvation = -29914.317490 eV Core-core repulsion = 25676.008874 eV Total energy + Delta-G solvation = -4238.308616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05802 -39.87697 -39.05247 -38.21317 -36.29158 -34.66703 -34.09393 -33.86531 -32.39782 -31.18230 -30.42732 -28.86542 -27.74433 -26.96762 -24.47697 -23.76309 -22.98648 -22.67213 -21.67315 -20.26615 -19.44934 -19.14836 -18.41688 -18.13676 -16.89943 -16.53344 -16.19003 -16.08039 -15.78177 -15.36328 -15.06004 -14.79925 -14.73682 -14.57527 -14.27580 -14.10067 -13.76668 -13.56337 -13.36438 -13.15406 -13.00434 -12.76911 -12.68846 -12.34786 -11.97897 -11.95914 -11.86477 -11.71380 -11.52546 -11.39595 -11.05621 -11.00166 -10.94951 -10.85975 -10.42987 -10.30416 -9.42654 -9.38539 -9.06692 -8.83236 -8.70082 -8.27708 -7.77459 -6.15303 -4.21927 0.61894 0.87451 1.80602 2.27387 2.78087 3.21794 3.25376 3.30081 3.31399 3.42328 3.48236 3.93571 4.14634 4.17373 4.32396 4.32819 4.43257 4.62612 4.74259 4.87218 4.90766 4.98324 5.08293 5.15746 5.20662 5.28018 5.37139 5.42424 5.48572 5.52826 5.59313 5.63381 5.78751 5.82611 5.89279 6.04183 6.11900 6.21354 6.33430 6.35367 6.84313 6.88337 7.10592 7.28683 7.50882 7.54392 7.57392 7.90031 8.03959 8.76090 8.93421 9.32645 9.47796 10.94825 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.002003 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.487642 B =13976.196358 C =14205.832775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.081 3.919 4 H 0.150 0.850 5 O -0.294 6.294 6 C 0.083 3.917 7 C -0.094 4.094 8 C -0.071 4.071 9 C 0.205 3.795 10 H 0.098 0.902 11 C -0.158 4.158 12 N -0.752 5.752 13 C 0.695 3.305 14 O -0.599 6.599 15 N -0.729 5.729 16 C 0.268 3.732 17 C -0.542 4.542 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 C -0.102 4.102 26 C -0.118 4.118 27 C 0.087 3.913 28 N -0.657 5.657 29 C 0.497 3.503 30 O -0.512 6.512 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.390 0.610 41 H 0.386 0.614 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.266 0.734 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.240 10.367 -23.051 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 H 0.167 0.833 5 O -0.209 6.209 6 C 0.037 3.963 7 C -0.114 4.114 8 C -0.073 4.073 9 C 0.099 3.901 10 H 0.116 0.884 11 C -0.217 4.217 12 N -0.410 5.410 13 C 0.394 3.606 14 O -0.478 6.478 15 N -0.381 5.381 16 C 0.147 3.853 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.121 4.121 26 C -0.138 4.138 27 C -0.008 4.008 28 N -0.303 5.303 29 C 0.283 3.717 30 O -0.387 6.387 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.224 0.776 41 H 0.218 0.782 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.988 10.954 -23.326 26.701 hybrid contribution 2.005 -1.372 0.230 2.440 sum 8.994 9.583 -23.096 26.573 Atomic orbital electron populations 1.21689 0.93168 1.02674 1.02918 1.22087 0.98755 0.93630 1.04041 1.22989 0.89760 0.97260 0.87785 0.83296 1.86295 1.58380 1.62352 1.13852 1.18444 0.88323 1.01834 0.87713 1.20371 1.00681 1.01674 0.88657 1.19873 0.93888 0.98960 0.94584 1.19469 0.99299 0.86072 0.85300 0.88380 1.22200 1.01828 0.96042 1.01630 1.45303 1.22386 1.35855 1.37481 1.16121 0.83929 0.80993 0.79525 1.90873 1.21997 1.63149 1.71770 1.45722 1.22930 1.32286 1.37178 1.18970 0.89921 0.93175 0.83282 1.21185 1.04253 1.15163 1.17493 0.92038 1.24942 0.94918 0.97586 0.96564 1.69962 1.14415 1.40707 1.27161 0.86481 0.79369 0.82087 0.78978 1.20107 1.21090 1.20122 1.20790 0.94212 1.00022 0.97122 1.20571 1.00174 1.02503 0.90595 1.17996 0.92063 1.05102 0.85670 1.43670 1.11007 1.71476 1.04173 1.21454 0.90914 0.75394 0.83918 1.90809 1.74946 1.47245 1.25664 0.91455 0.92140 0.91764 0.89677 0.90657 0.83889 0.92498 0.91807 0.91071 0.77600 0.78222 0.95730 0.95747 0.92404 0.84839 0.84792 0.74591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.81 37.16 0.36 -0.56 16 2 C -0.15 -1.02 5.44 -26.73 -0.15 -1.16 16 3 C 0.08 0.64 3.19 -27.84 -0.09 0.55 16 4 H 0.15 0.93 8.14 -51.93 -0.42 0.51 16 5 O -0.29 -2.68 9.69 -19.74 -0.19 -2.87 16 6 C 0.08 0.77 5.84 -39.08 -0.23 0.54 16 7 C -0.09 -0.87 9.61 -39.49 -0.38 -1.25 16 8 C -0.07 -0.67 4.96 -104.59 -0.52 -1.19 16 9 C 0.20 2.41 2.77 -69.08 -0.19 2.22 16 10 H 0.10 1.34 7.43 -51.93 -0.39 0.95 16 11 C -0.16 -1.75 9.46 37.16 0.35 -1.40 16 12 N -0.75 -10.26 5.03 -59.81 -0.30 -10.56 16 13 C 0.69 13.59 8.53 -86.92 -0.74 12.85 16 14 O -0.60 -14.27 16.01 5.29 0.08 -14.19 16 15 N -0.73 -15.06 5.55 -66.42 -0.37 -15.43 16 16 C 0.27 7.03 5.43 -5.20 -0.03 7.00 16 17 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 18 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 21 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.10 -0.80 9.04 -39.55 -0.36 -1.16 16 26 C -0.12 -0.83 9.93 -39.47 -0.39 -1.23 16 27 C 0.09 0.72 6.57 -83.53 -0.55 0.17 16 28 N -0.66 -5.18 5.46 -9.70 -0.05 -5.23 16 29 C 0.50 4.67 7.18 -10.87 -0.08 4.60 16 30 O -0.51 -6.24 17.95 5.54 0.10 -6.14 16 31 H 0.07 0.48 7.82 -51.93 -0.41 0.07 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.59 7.72 -51.93 -0.40 0.19 16 36 H 0.14 1.20 8.03 -52.48 -0.42 0.78 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.39 4.19 6.88 -40.82 -0.28 3.91 16 41 H 0.39 6.75 8.33 -40.82 -0.34 6.40 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.13 0.86 6.91 -52.48 -0.36 0.50 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.41 2.50 8.87 -40.82 -0.36 2.14 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -34.47 395.58 -9.17 -43.64 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.72 Total: 7.58 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.40 Total: 6.78 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.01 Total: -56.37 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.01 Total: -23.20 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.47 -9.17 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.039 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds