Wall clock time and date at job start Wed Apr 1 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 H 1.09004 * 109.44140 * 305.06089 * 3 2 1 5 5 O 1.42932 * 109.44545 * 64.99652 * 3 2 1 6 6 C 1.35998 * 116.99913 * 74.54731 * 5 3 2 7 7 C 1.38446 * 120.44982 * 211.24306 * 6 5 3 8 8 C 1.38287 * 119.91886 * 181.86893 * 7 6 5 9 9 C 1.50701 * 119.88496 * 179.72779 * 8 7 6 10 10 H 1.09002 * 109.47060 * 19.72677 * 9 8 7 11 11 C 1.52997 * 109.47212 * 259.72622 * 9 8 7 12 12 N 1.46500 * 109.47209 * 139.72655 * 9 8 7 13 13 C 1.34777 * 120.00075 * 204.99847 * 12 9 8 14 14 O 1.21587 * 119.99681 * 0.02562 * 13 12 9 15 15 N 1.34775 * 120.00044 * 179.97438 * 13 12 9 16 16 C 1.46500 * 119.99839 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46973 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00019 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99793 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00489 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99824 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46928 * 60.00132 * 21 19 17 23 23 H 1.48498 * 109.47097 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46872 * 299.99994 * 21 19 17 25 25 C 1.38285 * 120.23284 * 359.45027 * 8 7 6 26 26 C 1.38265 * 120.17312 * 359.97153 * 25 8 7 27 27 C 1.38519 * 119.88351 * 359.97438 * 26 25 8 28 28 N 1.40150 * 120.64642 * 180.17497 * 27 26 25 29 29 C 1.34954 * 119.23917 * 169.05304 * 28 27 26 30 30 O 1.21295 * 120.15259 * 174.21541 * 29 28 27 31 31 H 1.09000 * 109.47163 * 300.00003 * 1 2 3 32 32 H 1.09001 * 109.46947 * 60.00191 * 1 2 3 33 33 H 1.08996 * 109.46996 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47157 * 239.99440 * 2 1 3 35 35 H 1.09005 * 109.47424 * 119.99753 * 2 1 3 36 36 H 1.08008 * 120.03935 * 1.59408 * 7 6 5 37 37 H 1.09002 * 109.47153 * 299.99998 * 11 9 8 38 38 H 1.08998 * 109.47533 * 59.99628 * 11 9 8 39 39 H 1.08996 * 109.47853 * 179.97438 * 11 9 8 40 40 H 0.96997 * 120.00274 * 24.99818 * 12 9 8 41 41 H 0.96997 * 120.00305 * 0.02562 * 15 13 12 42 42 H 1.08998 * 109.47120 * 300.00352 * 16 15 13 43 43 H 1.09002 * 109.47331 * 59.99749 * 16 15 13 44 44 H 0.96998 * 120.00287 * 179.97438 * 20 19 17 45 45 H 1.08004 * 119.91386 * 179.97438 * 25 8 7 46 46 H 1.08001 * 120.06169 * 179.97438 * 26 25 8 47 47 H 0.97001 * 120.38270 * 349.02428 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9814 -0.8414 5 8 1.6615 2.0810 1.2215 6 6 2.3516 1.7321 2.3402 7 6 1.7330 1.7445 3.5787 8 6 2.4554 1.4251 4.7138 9 6 1.7827 1.4447 6.0622 10 1 0.7026 1.3808 5.9303 11 6 2.1319 2.7459 6.7874 12 7 2.2462 0.3038 6.8558 13 6 1.4720 -0.1896 7.8425 14 8 0.3887 0.3118 8.0736 15 7 1.8981 -1.2396 8.5722 16 6 1.0563 -1.7763 9.6444 17 6 1.7579 -2.9374 10.3004 18 1 2.7332 -3.2451 9.9531 19 6 1.1548 -3.6070 11.3439 20 7 -0.0330 -3.2327 11.7665 21 14 2.0249 -5.0459 12.1576 22 1 3.3173 -4.5856 12.7259 23 1 1.1716 -5.5900 13.2443 24 1 2.2772 -6.1062 11.1490 25 6 3.7914 1.0821 4.6153 26 6 4.4130 1.0560 3.3805 27 6 3.6947 1.3738 2.2394 28 7 4.3078 1.3489 0.9794 29 6 3.5423 1.4428 -0.1281 30 8 4.0605 1.5286 -1.2214 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.6885 2.0076 3.6587 37 1 3.2120 2.8098 6.9192 38 1 1.7872 3.5948 6.1970 39 1 1.6451 2.7604 7.7625 40 1 3.1102 -0.0964 6.6712 41 1 2.7621 -1.6398 8.3876 42 1 0.8714 -0.9984 10.3851 43 1 0.1074 -2.1134 9.2271 44 1 -0.4574 -3.7040 12.5004 45 1 4.3508 0.8340 5.5052 46 1 5.4566 0.7883 3.3056 47 1 5.2713 1.2656 0.9041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426449777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:07 Heat of formation + Delta-G solvation = -109.156570 kcal Electronic energy + Delta-G solvation = -29915.422133 eV Core-core repulsion = 25676.008874 eV Total energy + Delta-G solvation = -4239.413259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.73473 -41.09885 -40.07123 -39.02851 -37.22047 -36.08687 -35.44979 -34.59916 -34.32312 -32.17170 -31.29721 -29.68395 -28.88297 -28.37173 -25.37252 -24.85091 -24.13764 -23.53144 -22.68267 -21.75476 -20.23735 -20.02380 -19.65764 -19.05039 -18.09834 -17.63073 -17.33479 -16.90354 -16.73993 -16.53538 -16.29309 -16.20550 -15.82537 -15.66847 -15.10253 -14.87736 -14.82552 -14.74302 -14.43353 -14.10431 -14.02402 -13.96945 -13.77664 -13.37843 -13.34288 -12.98735 -12.91139 -12.69872 -12.67688 -12.62694 -12.20367 -12.10037 -11.98447 -11.87863 -11.75595 -11.45818 -11.19003 -11.12191 -10.75606 -10.25077 -9.71031 -9.55872 -8.97114 -8.24764 -6.40821 -0.08635 0.23266 1.09414 1.45792 1.49943 1.57835 1.63182 1.89860 2.19961 2.32161 2.42667 2.61732 2.82256 3.10184 3.53787 3.56997 3.58747 3.60703 3.79183 4.01057 4.13530 4.25360 4.26821 4.34530 4.41780 4.52435 4.61711 4.73878 4.77467 4.93293 4.96563 4.97476 5.03023 5.07918 5.14731 5.30868 5.31956 5.32961 5.37386 5.42854 5.53039 5.54169 5.68758 5.69852 5.74702 5.89745 6.21269 6.31447 6.62875 6.71135 7.28549 7.37400 7.79416 8.87196 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.002003 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.487642 B =13976.196358 C =14205.832775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.080 3.920 4 H 0.164 0.836 5 O -0.302 6.302 6 C 0.072 3.928 7 C -0.101 4.101 8 C -0.076 4.076 9 C 0.205 3.795 10 H 0.075 0.925 11 C -0.153 4.153 12 N -0.726 5.726 13 C 0.694 3.306 14 O -0.646 6.646 15 N -0.724 5.724 16 C 0.286 3.714 17 C -0.554 4.554 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.287 1.287 24 H -0.263 1.263 25 C -0.099 4.099 26 C -0.106 4.106 27 C 0.084 3.916 28 N -0.649 5.649 29 C 0.496 3.504 30 O -0.544 6.544 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.142 0.858 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.409 0.591 41 H 0.405 0.595 42 H -0.014 1.014 43 H -0.015 1.015 44 H 0.268 0.732 45 H 0.153 0.847 46 H 0.165 0.835 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.147 9.543 -23.999 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.021 3.979 4 H 0.181 0.819 5 O -0.217 6.217 6 C 0.026 3.974 7 C -0.121 4.121 8 C -0.077 4.077 9 C 0.100 3.900 10 H 0.093 0.907 11 C -0.211 4.211 12 N -0.384 5.384 13 C 0.394 3.606 14 O -0.528 6.528 15 N -0.377 5.377 16 C 0.163 3.837 17 C -0.592 4.592 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.213 1.213 24 H -0.187 1.187 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.012 4.012 28 N -0.295 5.295 29 C 0.283 3.717 30 O -0.421 6.421 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.160 0.840 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.247 0.753 41 H 0.240 0.760 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.077 0.923 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 9.978 10.147 -24.321 28.179 hybrid contribution 1.086 -1.029 0.449 1.561 sum 11.064 9.119 -23.872 27.847 Atomic orbital electron populations 1.21680 0.92706 1.02913 1.02981 1.22046 0.99066 0.92969 1.03876 1.23133 0.89004 0.97991 0.87749 0.81891 1.86285 1.58610 1.62673 1.14149 1.18537 0.88913 1.02312 0.87687 1.20381 1.00853 1.01987 0.88852 1.19575 0.94641 1.00626 0.92890 1.19507 0.98434 0.85520 0.86567 0.90714 1.22141 1.02745 0.96210 1.00047 1.45045 1.22233 1.35679 1.35453 1.16260 0.83736 0.80465 0.80166 1.90845 1.24385 1.64379 1.73206 1.45287 1.23157 1.32885 1.36419 1.18378 0.89450 0.92291 0.83583 1.21578 1.05067 1.14968 1.17547 0.89783 1.26051 0.95547 1.00787 0.97243 1.70133 1.16432 1.42446 1.27911 0.85218 0.78211 0.78053 0.77780 1.18634 1.21280 1.18722 1.20994 0.93411 0.99144 0.98268 1.20859 1.01400 1.00889 0.89518 1.18138 0.91864 1.05018 0.86150 1.43609 1.11521 1.70617 1.03766 1.21689 0.91560 0.74726 0.83706 1.90796 1.75575 1.48961 1.26778 0.92541 0.90933 0.91439 0.88946 0.91626 0.83975 0.90583 0.89985 0.94258 0.75346 0.76019 0.99649 0.99747 0.92312 0.82899 0.81746 0.73484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.81 71.98 0.71 -0.99 16 2 C -0.14 -1.82 5.44 30.59 0.17 -1.65 16 3 C 0.08 1.17 3.19 29.87 0.10 1.27 16 4 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 5 O -0.30 -5.24 9.69 -93.53 -0.91 -6.15 16 6 C 0.07 1.23 5.84 22.59 0.13 1.36 16 7 C -0.10 -1.78 9.61 22.33 0.21 -1.56 16 8 C -0.08 -1.29 4.96 -19.84 -0.10 -1.39 16 9 C 0.20 4.72 2.77 44.24 0.12 4.84 16 10 H 0.07 2.11 7.43 -2.39 -0.02 2.09 16 11 C -0.15 -3.26 9.46 71.98 0.68 -2.58 16 12 N -0.73 -19.06 5.03 -461.41 -2.32 -21.38 16 13 C 0.69 27.54 8.53 179.06 1.53 29.07 16 14 O -0.65 -32.20 16.01 -3.99 -0.06 -32.26 16 15 N -0.72 -30.06 5.55 -482.31 -2.68 -32.74 16 16 C 0.29 15.61 5.43 85.63 0.46 16.08 16 17 C -0.55 -29.65 9.28 25.60 0.24 -29.41 16 18 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 19 C 0.00 0.18 5.46 84.66 0.46 0.64 16 20 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 21 Si 0.98 41.69 29.54 68.60 2.03 43.72 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 C -0.10 -1.23 9.04 22.29 0.20 -1.03 16 26 C -0.11 -1.13 9.93 22.34 0.22 -0.91 16 27 C 0.08 1.20 6.57 38.15 0.25 1.45 16 28 N -0.65 -8.94 5.46 -302.90 -1.65 -10.59 16 29 C 0.50 8.72 7.18 87.65 0.63 9.35 16 30 O -0.54 -12.80 17.95 -3.08 -0.06 -12.86 16 31 H 0.06 0.79 7.82 -2.39 -0.02 0.77 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.97 7.72 -2.38 -0.02 0.95 16 36 H 0.14 2.42 8.03 -2.91 -0.02 2.39 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.41 7.71 6.88 -92.71 -0.64 7.07 16 41 H 0.40 13.56 8.33 -92.71 -0.77 12.79 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.15 1.30 6.91 -2.91 -0.02 1.28 16 46 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 47 H 0.42 4.12 8.87 -92.71 -0.82 3.30 16 Total: -1.00 -77.86 395.58 -0.55 -78.42 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -1.20 Total: 24.80 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 6.02 Total: 24.54 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -6.37 Total: -120.21 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -1.02 Total: -51.27 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -77.86 -0.55 -78.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.741 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds