Wall clock time and date at job start Wed Apr 1 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 H 1.09002 * 109.43549 * 55.09006 * 3 2 1 5 5 O 1.42923 * 109.39983 * 295.19778 * 3 2 1 6 6 C 1.36020 * 116.96701 * 285.36915 * 5 3 2 7 7 C 1.38445 * 120.45119 * 148.34266 * 6 5 3 8 8 C 1.38299 * 119.89413 * 178.49566 * 7 6 5 9 9 C 1.50696 * 119.88040 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47381 * 339.99981 * 9 8 7 11 11 C 1.53000 * 109.47386 * 99.99837 * 9 8 7 12 12 N 1.46504 * 109.47179 * 219.99828 * 9 8 7 13 13 C 1.34769 * 120.00034 * 155.00039 * 12 9 8 14 14 O 1.21588 * 120.00029 * 359.97438 * 13 12 9 15 15 N 1.34776 * 120.00149 * 179.97438 * 13 12 9 16 16 C 1.46498 * 120.00455 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47119 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00400 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99938 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00350 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99837 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46838 * 89.99844 * 21 19 17 23 23 H 1.48501 * 109.46998 * 209.99567 * 21 19 17 24 24 H 1.48500 * 109.47266 * 329.99794 * 21 19 17 25 25 C 1.38279 * 120.23645 * 359.97438 * 8 7 6 26 26 C 1.38261 * 120.19454 * 0.31788 * 25 8 7 27 27 C 1.38573 * 119.84452 * 359.97438 * 26 25 8 28 28 N 1.40157 * 120.54968 * 178.57406 * 27 26 25 29 29 C 1.34942 * 119.23469 * 191.24984 * 28 27 26 30 30 O 1.21294 * 120.11187 * 186.02567 * 29 28 27 31 31 H 1.08994 * 109.46794 * 60.00405 * 1 2 3 32 32 H 1.08999 * 109.46714 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46924 * 300.00060 * 1 2 3 34 34 H 1.08999 * 109.47288 * 239.99692 * 2 1 3 35 35 H 1.09008 * 109.47119 * 120.00037 * 2 1 3 36 36 H 1.08000 * 120.05318 * 358.51330 * 7 6 5 37 37 H 1.08991 * 109.47484 * 180.02562 * 11 9 8 38 38 H 1.09006 * 109.46994 * 300.00488 * 11 9 8 39 39 H 1.09006 * 109.47200 * 59.99553 * 11 9 8 40 40 H 0.97001 * 119.99664 * 334.99614 * 12 9 8 41 41 H 0.97003 * 119.99890 * 0.02562 * 15 13 12 42 42 H 1.09005 * 109.46695 * 299.99769 * 16 15 13 43 43 H 1.08993 * 109.47206 * 59.99748 * 16 15 13 44 44 H 0.97000 * 120.00294 * 180.02562 * 20 19 17 45 45 H 1.08005 * 119.90137 * 180.29334 * 25 8 7 46 46 H 1.08006 * 120.08010 * 180.02562 * 26 25 8 47 47 H 0.97001 * 120.37793 * 11.27793 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9805 0.8429 5 8 1.6572 2.0814 -1.2198 6 6 2.3453 1.7340 -2.3405 7 6 1.7214 1.7377 -3.5764 8 6 2.4401 1.4126 -4.7123 9 6 1.7608 1.4174 -6.0575 10 1 0.6820 1.3440 -5.9200 11 6 2.0939 2.7173 -6.7925 12 7 2.2314 0.2760 -6.8463 13 6 1.4572 -0.2310 -7.8260 14 8 0.3680 0.2585 -8.0550 15 7 1.8903 -1.2807 -8.5520 16 6 1.0491 -1.8316 -9.6174 17 6 1.7587 -2.9901 -10.2694 18 1 2.7382 -3.2868 -9.9244 19 6 1.1571 -3.6721 -11.3057 20 7 1.7765 -4.6829 -11.8751 21 14 -0.5374 -3.1595 -11.9020 22 1 -0.3977 -2.1466 -12.9789 23 1 -1.2567 -4.3468 -12.4295 24 1 -1.3049 -2.5776 -10.7716 25 6 3.7800 1.0842 -4.6183 26 6 4.4084 1.0725 -3.3868 27 6 3.6922 1.3914 -2.2442 28 7 4.3067 1.3553 -0.9850 29 6 3.5428 1.4443 0.1239 30 8 4.0634 1.5247 1.2165 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 0.6751 1.9944 -3.6533 37 1 1.6022 2.7209 -7.7652 38 1 1.7438 3.5665 -6.2056 39 1 3.1727 2.7908 -6.9300 40 1 3.1002 -0.1147 -6.6634 41 1 2.7591 -1.6715 -8.3691 42 1 0.1055 -2.1757 -9.1939 43 1 0.8533 -1.0596 -10.3615 44 1 1.3534 -5.1625 -12.6044 45 1 4.3373 0.8358 -5.5095 46 1 5.4551 0.8161 -3.3156 47 1 5.2699 1.2678 -0.9116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:12 Heat of formation + Delta-G solvation = -80.098398 kcal Electronic energy + Delta-G solvation = -29975.201672 eV Core-core repulsion = 25737.048470 eV Total energy + Delta-G solvation = -4238.153202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08059 -39.95548 -39.13111 -38.26282 -36.35067 -34.73993 -34.17044 -33.92914 -32.42329 -31.27045 -30.52652 -28.93288 -27.76865 -27.56331 -24.51211 -23.78235 -22.99571 -22.44622 -21.57753 -20.37691 -19.49398 -19.18867 -18.46859 -18.26364 -16.92766 -16.56322 -16.42479 -16.10201 -15.96684 -15.40078 -15.11640 -14.90697 -14.83137 -14.40566 -14.29909 -14.12348 -13.90969 -13.62240 -13.39394 -13.21765 -13.05412 -12.81779 -12.79218 -12.37281 -12.35628 -12.14888 -11.97834 -11.85189 -11.54903 -11.41896 -11.10177 -11.03691 -10.96378 -10.75335 -10.44756 -9.96680 -9.61977 -9.45951 -9.10217 -8.93599 -8.76137 -8.30933 -8.03883 -6.21009 -4.22914 0.59037 0.84252 1.78410 2.25657 2.75128 3.16441 3.27454 3.31506 3.36733 3.43405 3.45466 3.78315 4.12626 4.15478 4.30102 4.34197 4.38900 4.59826 4.71179 4.84810 4.87481 4.93393 4.95083 5.13705 5.14643 5.23371 5.30258 5.37864 5.46674 5.50349 5.56316 5.59503 5.74005 5.80223 5.83537 6.01456 6.08330 6.15316 6.27887 6.33253 6.73332 6.74737 6.85304 7.11610 7.23226 7.26900 7.39791 7.54905 8.27583 8.67812 8.80806 9.18975 9.40446 10.90925 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.002060 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.526266 B =13591.468536 C =13816.929898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.082 3.918 4 H 0.150 0.850 5 O -0.295 6.295 6 C 0.083 3.917 7 C -0.094 4.094 8 C -0.073 4.073 9 C 0.205 3.795 10 H 0.098 0.902 11 C -0.159 4.159 12 N -0.750 5.750 13 C 0.697 3.303 14 O -0.602 6.602 15 N -0.722 5.722 16 C 0.239 3.761 17 C -0.542 4.542 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C -0.102 4.102 26 C -0.118 4.118 27 C 0.089 3.911 28 N -0.657 5.657 29 C 0.497 3.503 30 O -0.512 6.512 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.392 0.608 41 H 0.392 0.608 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.267 0.733 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 13.877 23.586 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 H 0.167 0.833 5 O -0.209 6.209 6 C 0.036 3.964 7 C -0.113 4.113 8 C -0.075 4.075 9 C 0.099 3.901 10 H 0.116 0.884 11 C -0.217 4.217 12 N -0.408 5.408 13 C 0.396 3.604 14 O -0.481 6.481 15 N -0.374 5.374 16 C 0.116 3.884 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 C -0.121 4.121 26 C -0.138 4.138 27 C -0.007 4.007 28 N -0.303 5.303 29 C 0.283 3.717 30 O -0.386 6.386 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.226 0.774 41 H 0.225 0.775 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.077 0.923 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.161 14.345 23.872 28.029 hybrid contribution 0.821 -0.442 -0.163 0.947 sum 3.982 13.903 23.708 27.771 Atomic orbital electron populations 1.21689 0.93178 1.02667 1.02898 1.22087 0.98737 0.93619 1.04066 1.22989 0.89711 0.97256 0.87831 0.83298 1.86300 1.58371 1.62429 1.13813 1.18415 0.88211 1.02047 0.87715 1.20359 1.00663 1.01588 0.88707 1.19846 0.93907 0.99219 0.94515 1.19483 0.99200 0.85974 0.85457 0.88364 1.22204 1.01968 0.96039 1.01514 1.45264 1.21847 1.35768 1.37896 1.16082 0.83962 0.80794 0.79521 1.90865 1.21631 1.63851 1.71773 1.45398 1.22473 1.32391 1.37171 1.19355 0.90817 0.93528 0.84706 1.21092 1.05410 1.13693 1.17823 0.90328 1.24788 0.97881 0.94361 0.95634 1.69878 1.38424 1.20499 1.24276 0.86811 0.84430 0.78436 0.79983 1.19860 1.20972 1.18403 1.20791 0.94101 0.99981 0.97208 1.20600 1.00236 1.02393 0.90619 1.18015 0.91962 1.04983 0.85711 1.43675 1.11085 1.71435 1.04145 1.21451 0.90925 0.75392 0.83914 1.90811 1.74824 1.47189 1.25776 0.91480 0.91761 0.92143 0.90656 0.89654 0.83915 0.91129 0.91737 0.92403 0.77368 0.77500 0.95913 0.96342 0.92282 0.84811 0.84723 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.81 37.16 0.36 -0.53 16 2 C -0.15 -0.99 5.45 -26.73 -0.15 -1.14 16 3 C 0.08 0.62 3.20 -27.84 -0.09 0.53 16 4 H 0.15 0.90 8.14 -51.93 -0.42 0.48 16 5 O -0.29 -2.60 9.68 -19.80 -0.19 -2.79 16 6 C 0.08 0.74 5.83 -39.11 -0.23 0.51 16 7 C -0.09 -0.83 9.61 -39.48 -0.38 -1.21 16 8 C -0.07 -0.65 4.96 -104.59 -0.52 -1.17 16 9 C 0.20 2.28 2.77 -69.08 -0.19 2.09 16 10 H 0.10 1.26 7.43 -51.93 -0.39 0.87 16 11 C -0.16 -1.65 9.46 37.16 0.35 -1.30 16 12 N -0.75 -9.72 5.03 -59.81 -0.30 -10.02 16 13 C 0.70 12.91 8.53 -86.93 -0.74 12.17 16 14 O -0.60 -13.47 16.01 5.29 0.08 -13.38 16 15 N -0.72 -14.27 5.55 -66.42 -0.37 -14.64 16 16 C 0.24 5.80 4.50 -5.20 -0.02 5.78 16 17 C -0.54 -14.67 9.83 -34.44 -0.34 -15.01 16 18 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 19 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 20 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 21 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 25 C -0.10 -0.77 9.04 -39.56 -0.36 -1.12 16 26 C -0.12 -0.81 9.94 -39.45 -0.39 -1.20 16 27 C 0.09 0.72 6.58 -83.53 -0.55 0.17 16 28 N -0.66 -5.08 5.46 -9.70 -0.05 -5.13 16 29 C 0.50 4.60 7.19 -10.87 -0.08 4.52 16 30 O -0.51 -6.17 17.95 5.55 0.10 -6.07 16 31 H 0.07 0.46 7.81 -51.93 -0.41 0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.58 7.73 -51.93 -0.40 0.18 16 35 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 36 H 0.14 1.13 8.03 -52.49 -0.42 0.71 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.39 4.01 6.88 -40.82 -0.28 3.73 16 41 H 0.39 6.74 8.34 -40.82 -0.34 6.40 16 42 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 43 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.13 0.82 6.91 -52.48 -0.36 0.46 16 46 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 47 H 0.42 2.45 8.87 -40.82 -0.36 2.09 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -34.51 391.98 -8.82 -43.33 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.69 Total: 6.59 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -3.41 Total: 5.15 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.05 Total: -55.31 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.01 Total: -22.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.51 -8.82 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.773 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds