Wall clock time and date at job start Wed Apr 1 2020 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 H 1.09002 * 109.43549 * 55.09006 * 3 2 1 5 5 O 1.42923 * 109.39983 * 295.19778 * 3 2 1 6 6 C 1.36020 * 116.96701 * 285.36915 * 5 3 2 7 7 C 1.38445 * 120.45119 * 148.34266 * 6 5 3 8 8 C 1.38299 * 119.89413 * 178.49566 * 7 6 5 9 9 C 1.50696 * 119.88040 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47381 * 339.99981 * 9 8 7 11 11 C 1.53000 * 109.47386 * 99.99837 * 9 8 7 12 12 N 1.46504 * 109.47179 * 219.99828 * 9 8 7 13 13 C 1.34769 * 120.00034 * 155.00039 * 12 9 8 14 14 O 1.21588 * 120.00029 * 359.97438 * 13 12 9 15 15 N 1.34776 * 120.00149 * 179.97438 * 13 12 9 16 16 C 1.46498 * 120.00455 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47119 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00400 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99938 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00350 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99837 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46838 * 89.99844 * 21 19 17 23 23 H 1.48501 * 109.46998 * 209.99567 * 21 19 17 24 24 H 1.48500 * 109.47266 * 329.99794 * 21 19 17 25 25 C 1.38279 * 120.23645 * 359.97438 * 8 7 6 26 26 C 1.38261 * 120.19454 * 0.31788 * 25 8 7 27 27 C 1.38573 * 119.84452 * 359.97438 * 26 25 8 28 28 N 1.40157 * 120.54968 * 178.57406 * 27 26 25 29 29 C 1.34942 * 119.23469 * 191.24984 * 28 27 26 30 30 O 1.21294 * 120.11187 * 186.02567 * 29 28 27 31 31 H 1.08994 * 109.46794 * 60.00405 * 1 2 3 32 32 H 1.08999 * 109.46714 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46924 * 300.00060 * 1 2 3 34 34 H 1.08999 * 109.47288 * 239.99692 * 2 1 3 35 35 H 1.09008 * 109.47119 * 120.00037 * 2 1 3 36 36 H 1.08000 * 120.05318 * 358.51330 * 7 6 5 37 37 H 1.08991 * 109.47484 * 180.02562 * 11 9 8 38 38 H 1.09006 * 109.46994 * 300.00488 * 11 9 8 39 39 H 1.09006 * 109.47200 * 59.99553 * 11 9 8 40 40 H 0.97001 * 119.99664 * 334.99614 * 12 9 8 41 41 H 0.97003 * 119.99890 * 0.02562 * 15 13 12 42 42 H 1.09005 * 109.46695 * 299.99769 * 16 15 13 43 43 H 1.08993 * 109.47206 * 59.99748 * 16 15 13 44 44 H 0.97000 * 120.00294 * 180.02562 * 20 19 17 45 45 H 1.08005 * 119.90137 * 180.29334 * 25 8 7 46 46 H 1.08006 * 120.08010 * 180.02562 * 26 25 8 47 47 H 0.97001 * 120.37793 * 11.27793 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9805 0.8429 5 8 1.6572 2.0814 -1.2198 6 6 2.3453 1.7340 -2.3405 7 6 1.7214 1.7377 -3.5764 8 6 2.4401 1.4126 -4.7123 9 6 1.7608 1.4174 -6.0575 10 1 0.6820 1.3440 -5.9200 11 6 2.0939 2.7173 -6.7925 12 7 2.2314 0.2760 -6.8463 13 6 1.4572 -0.2310 -7.8260 14 8 0.3680 0.2585 -8.0550 15 7 1.8903 -1.2807 -8.5520 16 6 1.0491 -1.8316 -9.6174 17 6 1.7587 -2.9901 -10.2694 18 1 2.7382 -3.2868 -9.9244 19 6 1.1571 -3.6721 -11.3057 20 7 1.7765 -4.6829 -11.8751 21 14 -0.5374 -3.1595 -11.9020 22 1 -0.3977 -2.1466 -12.9789 23 1 -1.2567 -4.3468 -12.4295 24 1 -1.3049 -2.5776 -10.7716 25 6 3.7800 1.0842 -4.6183 26 6 4.4084 1.0725 -3.3868 27 6 3.6922 1.3914 -2.2442 28 7 4.3067 1.3553 -0.9850 29 6 3.5428 1.4443 0.1239 30 8 4.0634 1.5247 1.2165 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 0.6751 1.9944 -3.6533 37 1 1.6022 2.7209 -7.7652 38 1 1.7438 3.5665 -6.2056 39 1 3.1727 2.7908 -6.9300 40 1 3.1002 -0.1147 -6.6634 41 1 2.7591 -1.6715 -8.3691 42 1 0.1055 -2.1757 -9.1939 43 1 0.8533 -1.0596 -10.3615 44 1 1.3534 -5.1625 -12.6044 45 1 4.3373 0.8358 -5.5095 46 1 5.4551 0.8161 -3.3156 47 1 5.2699 1.2678 -0.9116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426449778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:11 Heat of formation + Delta-G solvation = -105.581400 kcal Electronic energy + Delta-G solvation = -29976.306698 eV Core-core repulsion = 25737.048470 eV Total energy + Delta-G solvation = -4239.258228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.73507 -41.12584 -40.08325 -39.03434 -37.23738 -36.10317 -35.45275 -34.59664 -34.37805 -32.25570 -31.33525 -29.79305 -29.28478 -28.37235 -25.31122 -24.68348 -23.92680 -23.52326 -22.65055 -21.79333 -20.25078 -20.07309 -19.70691 -19.05713 -18.34095 -17.71977 -17.34218 -16.90008 -16.73877 -16.47509 -16.29081 -16.24552 -15.86491 -15.62291 -15.19868 -14.89950 -14.85828 -14.76077 -14.50332 -14.33263 -14.12487 -14.07031 -13.79925 -13.40997 -13.34354 -13.02506 -12.97991 -12.69799 -12.69054 -12.62647 -12.10010 -11.98513 -11.89797 -11.87515 -11.75700 -11.60877 -11.22696 -11.13069 -10.88239 -10.28533 -9.71955 -9.62935 -8.97481 -8.36459 -6.42739 -0.08703 0.22852 1.09147 1.36376 1.38589 1.51649 1.63175 1.87325 2.19654 2.28605 2.31952 2.61805 2.81852 2.99541 3.53143 3.54270 3.58208 3.58777 3.79188 4.00828 4.13192 4.25417 4.26964 4.34568 4.41852 4.52597 4.61780 4.73873 4.75952 4.82082 4.93541 4.97183 5.00590 5.03457 5.08084 5.10859 5.29626 5.31409 5.32858 5.36438 5.42418 5.53118 5.60902 5.68949 5.70277 6.02421 6.21038 6.32778 6.59785 6.62341 7.18569 7.31805 7.73239 8.78133 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.002060 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.526266 B =13591.468536 C =13816.929898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.081 3.919 4 H 0.164 0.836 5 O -0.302 6.302 6 C 0.071 3.929 7 C -0.099 4.099 8 C -0.077 4.077 9 C 0.205 3.795 10 H 0.079 0.921 11 C -0.153 4.153 12 N -0.727 5.727 13 C 0.697 3.303 14 O -0.641 6.641 15 N -0.722 5.722 16 C 0.252 3.748 17 C -0.543 4.543 18 H 0.060 0.940 19 C 0.026 3.974 20 N -0.932 5.932 21 Si 0.937 3.063 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.100 4.100 26 C -0.108 4.108 27 C 0.084 3.916 28 N -0.649 5.649 29 C 0.495 3.505 30 O -0.544 6.544 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.405 0.595 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.272 0.728 45 H 0.152 0.848 46 H 0.163 0.837 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 14.689 24.465 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.022 3.978 4 H 0.181 0.819 5 O -0.217 6.217 6 C 0.024 3.976 7 C -0.119 4.119 8 C -0.078 4.078 9 C 0.100 3.900 10 H 0.097 0.903 11 C -0.212 4.212 12 N -0.385 5.385 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.376 5.376 16 C 0.127 3.873 17 C -0.581 4.581 18 H 0.078 0.922 19 C -0.174 4.174 20 N -0.571 5.571 21 Si 0.760 3.240 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.011 4.011 28 N -0.296 5.296 29 C 0.283 3.717 30 O -0.421 6.421 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.163 0.837 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.246 0.754 41 H 0.240 0.760 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.081 0.919 45 H 0.170 0.830 46 H 0.181 0.819 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.761 15.172 24.776 29.295 hybrid contribution 0.739 -0.671 -0.363 1.062 sum 4.500 14.501 24.413 28.749 Atomic orbital electron populations 1.21679 0.92626 1.02912 1.03017 1.22048 0.99121 0.92956 1.03843 1.23124 0.88865 0.97982 0.87851 0.81887 1.86290 1.58562 1.62735 1.14080 1.18526 0.88739 1.02527 0.87759 1.20390 1.00921 1.01768 0.88784 1.19590 0.94530 1.00623 0.93075 1.19528 0.98489 0.85433 0.86508 0.90275 1.22148 1.02736 0.96175 1.00127 1.45072 1.21743 1.35600 1.36074 1.16161 0.83818 0.80236 0.80061 1.90840 1.23590 1.64866 1.73029 1.45099 1.22658 1.33072 1.36759 1.18926 0.90571 0.92325 0.85437 1.21286 1.04812 1.14273 1.17732 0.92198 1.25580 1.01491 0.94395 0.95976 1.69978 1.40209 1.21754 1.25163 0.85868 0.80113 0.78442 0.79530 1.19018 1.20018 1.18368 1.20992 0.93460 0.99196 0.98225 1.20874 1.01407 1.00920 0.89659 1.18159 0.91841 1.05026 0.86123 1.43623 1.11578 1.70585 1.03798 1.21710 0.91619 0.74709 0.83686 1.90796 1.75478 1.48959 1.26913 0.92423 0.91454 0.90960 0.91645 0.89034 0.83740 0.93924 0.89987 0.90799 0.75398 0.76002 0.97258 0.97255 0.91921 0.83025 0.81933 0.73531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 71.98 0.71 -0.90 16 2 C -0.14 -1.76 5.45 30.60 0.17 -1.60 16 3 C 0.08 1.15 3.20 29.88 0.10 1.24 16 4 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 5 O -0.30 -5.03 9.68 -93.77 -0.91 -5.93 16 6 C 0.07 1.17 5.83 22.58 0.13 1.30 16 7 C -0.10 -1.62 9.61 22.33 0.21 -1.41 16 8 C -0.08 -1.22 4.96 -19.84 -0.10 -1.31 16 9 C 0.21 4.31 2.77 44.24 0.12 4.44 16 10 H 0.08 2.01 7.43 -2.39 -0.02 1.99 16 11 C -0.15 -2.97 9.46 71.98 0.68 -2.29 16 12 N -0.73 -17.69 5.03 -461.42 -2.32 -20.01 16 13 C 0.70 25.33 8.53 179.06 1.53 26.86 16 14 O -0.64 -28.68 16.01 -3.99 -0.06 -28.75 16 15 N -0.72 -28.07 5.55 -482.32 -2.68 -30.75 16 16 C 0.25 12.19 4.50 85.63 0.38 12.58 16 17 C -0.54 -29.49 9.83 25.60 0.25 -29.24 16 18 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 19 C 0.03 1.44 5.47 84.66 0.46 1.90 16 20 N -0.93 -55.11 13.96 21.45 0.30 -54.81 16 21 Si 0.94 43.68 27.47 68.60 1.88 45.56 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 25 C -0.10 -1.19 9.04 22.28 0.20 -0.99 16 26 C -0.11 -1.14 9.94 22.36 0.22 -0.92 16 27 C 0.08 1.18 6.58 38.15 0.25 1.43 16 28 N -0.65 -8.92 5.46 -302.91 -1.65 -10.57 16 29 C 0.50 8.64 7.19 87.66 0.63 9.27 16 30 O -0.54 -12.77 17.95 -3.07 -0.06 -12.83 16 31 H 0.06 0.75 7.81 -2.39 -0.02 0.73 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.06 0.94 7.73 -2.39 -0.02 0.92 16 35 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.14 2.22 8.03 -2.91 -0.02 2.19 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.41 7.31 6.88 -92.71 -0.64 6.67 16 41 H 0.40 13.50 8.34 -92.71 -0.77 12.73 16 42 H 0.01 0.49 7.20 -2.38 -0.02 0.47 16 43 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.15 1.26 6.91 -2.91 -0.02 1.24 16 46 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 47 H 0.42 4.17 8.87 -92.71 -0.82 3.35 16 Total: -1.00 -74.49 391.98 -0.80 -75.28 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -1.25 Total: 22.45 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 5.95 Total: 20.36 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -6.35 Total: -116.15 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -1.03 Total: -47.51 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -74.49 -0.80 -75.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.297 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds