Wall clock time and date at job start Wed Apr 1 2020 04:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47089 * 2 1 4 4 H 1.08999 * 109.44036 * 304.91461 * 3 2 1 5 5 O 1.42931 * 109.40535 * 64.81241 * 3 2 1 6 6 C 1.36016 * 116.98491 * 74.62144 * 5 3 2 7 7 C 1.38444 * 120.43814 * 211.23866 * 6 5 3 8 8 C 1.38299 * 119.89659 * 181.45758 * 7 6 5 9 9 C 1.50699 * 119.88039 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47247 * 340.00168 * 9 8 7 11 11 C 1.53006 * 109.46866 * 99.99999 * 9 8 7 12 12 N 1.46500 * 109.46939 * 219.99886 * 9 8 7 13 13 C 1.34781 * 119.99732 * 155.00269 * 12 9 8 14 14 O 1.21587 * 119.99810 * 359.97438 * 13 12 9 15 15 N 1.34776 * 119.99746 * 180.02562 * 13 12 9 16 16 C 1.46502 * 119.99458 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.46701 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00131 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99827 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99996 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47018 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47003 * 120.00113 * 21 19 17 24 24 H 1.48499 * 109.47287 * 240.00452 * 21 19 17 25 25 C 1.38274 * 120.23875 * 0.28530 * 8 7 6 26 26 C 1.38275 * 120.19164 * 359.20315 * 25 8 7 27 27 C 1.38576 * 119.84048 * 0.54617 * 26 25 8 28 28 N 1.40158 * 120.54492 * 180.59711 * 27 26 25 29 29 C 1.34957 * 119.20409 * 168.82982 * 28 27 26 30 30 O 1.21300 * 120.12764 * 174.01713 * 29 28 27 31 31 H 1.08993 * 109.47192 * 299.99941 * 1 2 3 32 32 H 1.08994 * 109.46909 * 60.00162 * 1 2 3 33 33 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47054 * 239.99604 * 2 1 3 35 35 H 1.09003 * 109.47313 * 120.00552 * 2 1 3 36 36 H 1.07994 * 120.05144 * 1.48678 * 7 6 5 37 37 H 1.09001 * 109.47002 * 179.97438 * 11 9 8 38 38 H 1.08993 * 109.46955 * 300.00219 * 11 9 8 39 39 H 1.09000 * 109.47050 * 60.00048 * 11 9 8 40 40 H 0.96998 * 120.00364 * 334.99781 * 12 9 8 41 41 H 0.96998 * 120.00350 * 359.97438 * 15 13 12 42 42 H 1.08999 * 109.47215 * 299.99256 * 16 15 13 43 43 H 1.09001 * 109.47148 * 59.99849 * 16 15 13 44 44 H 0.97000 * 119.99874 * 179.97438 * 20 19 17 45 45 H 1.07998 * 119.90499 * 179.47419 * 25 8 7 46 46 H 1.07996 * 120.07971 * 180.28692 * 26 25 8 47 47 H 0.96997 * 120.39863 * 348.80163 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9806 -0.8428 5 8 1.6574 2.0814 1.2199 6 6 2.3453 1.7341 2.3407 7 6 1.7234 1.7466 3.5775 8 6 2.4415 1.4206 4.7136 9 6 1.7640 1.4338 6.0596 10 1 0.8611 2.0420 6.0060 11 6 1.3927 0.0038 6.4576 12 7 2.6744 1.9981 7.0590 13 6 2.1794 2.5743 8.1724 14 8 0.9772 2.6260 8.3470 15 7 3.0169 3.0940 9.0916 16 6 2.4787 3.7207 10.3015 17 6 3.6151 4.2167 11.1582 18 1 4.6360 4.0792 10.8336 19 6 3.3513 4.8470 12.3558 20 7 2.1081 5.0149 12.7508 21 14 4.7598 5.4612 13.4180 22 1 6.0518 5.1512 12.7546 23 1 4.6377 6.9298 13.6012 24 1 4.7097 4.7913 14.7424 25 6 3.7803 1.0879 4.6195 26 6 4.4057 1.0630 3.3865 27 6 3.6902 1.3836 2.2438 28 7 4.3060 1.3511 0.9852 29 6 3.5427 1.4433 -0.1239 30 8 4.0635 1.5262 -1.2163 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.6789 2.0101 3.6550 37 1 0.9031 0.0132 7.4314 38 1 0.7155 -0.4161 5.7140 39 1 2.2956 -0.6045 6.5113 40 1 3.6334 1.9571 6.9196 41 1 3.9759 3.0530 8.9521 42 1 1.8403 4.5592 10.0231 43 1 1.8950 2.9895 10.8606 44 1 1.9226 5.4579 13.5935 45 1 4.3381 0.8424 5.5111 46 1 5.4502 0.7983 3.3146 47 1 5.2693 1.2638 0.9122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:15 Heat of formation + Delta-G solvation = -83.518682 kcal Electronic energy + Delta-G solvation = -29830.509611 eV Core-core repulsion = 25592.208095 eV Total energy + Delta-G solvation = -4238.301516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06536 -39.87759 -39.05312 -38.21844 -36.29592 -34.66922 -34.11086 -33.87661 -32.39303 -31.18338 -30.43105 -28.87518 -27.76915 -26.96433 -24.47810 -23.77072 -23.02461 -22.67408 -21.67601 -20.26691 -19.45468 -19.14696 -18.41856 -18.13029 -16.94399 -16.51581 -16.20054 -16.09459 -15.79520 -15.37032 -15.06546 -14.79457 -14.73822 -14.57098 -14.28509 -14.12536 -13.81632 -13.58157 -13.31980 -13.04788 -13.01854 -12.80066 -12.77917 -12.40765 -11.98630 -11.97291 -11.88771 -11.75442 -11.56968 -11.39929 -11.02296 -11.00055 -10.92165 -10.88771 -10.43838 -10.30203 -9.42478 -9.34896 -9.07524 -8.81822 -8.70204 -8.28840 -7.76899 -6.15256 -4.21575 0.61231 0.87345 1.80723 2.26266 2.79400 3.15335 3.24020 3.30938 3.33705 3.44184 3.49428 3.94146 4.11320 4.17262 4.29899 4.33039 4.42516 4.60141 4.72773 4.83384 4.88911 4.97378 5.08007 5.10946 5.20972 5.27743 5.36195 5.40253 5.43270 5.48348 5.58529 5.62185 5.75855 5.78268 5.88754 6.03748 6.11550 6.20792 6.32916 6.35084 6.84426 6.88093 7.11129 7.28049 7.51622 7.55359 7.57911 7.90356 8.04262 8.76964 8.93949 9.33174 9.48263 10.94986 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.001913 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.826534 B =14631.046878 C =15336.614367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.081 3.919 4 H 0.150 0.850 5 O -0.294 6.294 6 C 0.083 3.917 7 C -0.094 4.094 8 C -0.072 4.072 9 C 0.204 3.796 10 H 0.098 0.902 11 C -0.158 4.158 12 N -0.752 5.752 13 C 0.695 3.305 14 O -0.599 6.599 15 N -0.729 5.729 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.102 4.102 26 C -0.118 4.118 27 C 0.088 3.912 28 N -0.657 5.657 29 C 0.496 3.504 30 O -0.512 6.512 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.143 0.857 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.390 0.610 41 H 0.386 0.614 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.265 0.735 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -12.590 -25.801 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.022 3.978 4 H 0.167 0.833 5 O -0.208 6.208 6 C 0.037 3.963 7 C -0.114 4.114 8 C -0.073 4.073 9 C 0.098 3.902 10 H 0.116 0.884 11 C -0.217 4.217 12 N -0.410 5.410 13 C 0.394 3.606 14 O -0.478 6.478 15 N -0.381 5.381 16 C 0.146 3.854 17 C -0.579 4.579 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.121 4.121 26 C -0.139 4.139 27 C -0.008 4.008 28 N -0.303 5.303 29 C 0.283 3.717 30 O -0.386 6.386 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.224 0.776 41 H 0.218 0.782 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.984 -12.227 -26.112 28.850 hybrid contribution 2.392 0.193 0.426 2.438 sum 3.376 -12.034 -25.687 28.566 Atomic orbital electron populations 1.21690 0.93213 1.02525 1.03014 1.22080 0.98692 0.93704 1.03961 1.22981 0.89751 0.97175 0.87924 0.83307 1.86312 1.58277 1.62456 1.13792 1.18426 0.88295 1.01922 0.87687 1.20361 1.00898 1.01359 0.88767 1.19873 0.93997 0.98772 0.94684 1.19472 0.92816 0.95382 0.82486 0.88373 1.22198 1.01663 0.95098 1.02693 1.45308 1.09052 1.65044 1.21633 1.16124 0.85947 0.78596 0.79899 1.90873 1.13517 1.64797 1.78612 1.45722 1.08392 1.61430 1.22560 1.18984 0.94648 0.92628 0.79168 1.21267 0.92750 1.39158 1.04773 0.91920 1.24951 0.95958 0.95648 0.97533 1.69989 1.18170 1.41980 1.22103 0.86366 0.81863 0.78531 0.80142 1.19693 1.20831 1.20832 1.20791 0.94224 0.99969 0.97113 1.20595 1.00178 1.02505 0.90598 1.18005 0.92017 1.05050 0.85711 1.43673 1.11063 1.71427 1.04160 1.21452 0.90929 0.75415 0.83917 1.90812 1.74818 1.47204 1.25809 0.91434 0.92108 0.91865 0.89705 0.90715 0.83882 0.91075 0.91850 0.92517 0.77588 0.78208 0.95726 0.95715 0.92527 0.84847 0.84775 0.74558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.81 37.16 0.36 -0.40 16 2 C -0.15 -0.89 5.44 -26.73 -0.15 -1.03 16 3 C 0.08 0.61 3.20 -27.85 -0.09 0.53 16 4 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 5 O -0.29 -2.68 9.68 -19.79 -0.19 -2.87 16 6 C 0.08 0.77 5.84 -39.10 -0.23 0.54 16 7 C -0.09 -0.87 9.61 -39.48 -0.38 -1.25 16 8 C -0.07 -0.67 4.96 -104.59 -0.52 -1.19 16 9 C 0.20 2.41 2.77 -69.08 -0.19 2.22 16 10 H 0.10 1.34 7.43 -51.93 -0.39 0.96 16 11 C -0.16 -1.71 9.46 37.16 0.35 -1.36 16 12 N -0.75 -10.34 5.03 -59.81 -0.30 -10.64 16 13 C 0.69 13.67 8.53 -86.91 -0.74 12.93 16 14 O -0.60 -14.34 16.01 5.29 0.08 -14.25 16 15 N -0.73 -15.15 5.55 -66.41 -0.37 -15.52 16 16 C 0.27 7.04 5.43 -5.19 -0.03 7.01 16 17 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 18 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.88 -25.96 13.29 55.43 0.74 -25.23 16 21 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 C -0.10 -0.80 9.05 -39.55 -0.36 -1.16 16 26 C -0.12 -0.83 9.94 -39.44 -0.39 -1.23 16 27 C 0.09 0.73 6.57 -83.52 -0.55 0.18 16 28 N -0.66 -5.17 5.46 -9.70 -0.05 -5.22 16 29 C 0.50 4.62 7.19 -10.87 -0.08 4.55 16 30 O -0.51 -6.21 17.95 5.54 0.10 -6.11 16 31 H 0.07 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.49 7.73 -51.93 -0.40 0.09 16 36 H 0.14 1.20 8.03 -52.49 -0.42 0.78 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.39 4.23 6.85 -40.82 -0.28 3.95 16 41 H 0.39 6.80 8.34 -40.82 -0.34 6.46 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.13 0.86 6.88 -52.49 -0.36 0.50 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.42 2.52 8.87 -40.82 -0.36 2.15 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -34.77 395.53 -9.17 -43.95 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.72 Total: 7.15 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -3.40 Total: 7.08 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.01 Total: -56.61 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.01 Total: -23.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.77 -9.17 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.573 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds