Wall clock time and date at job start Wed Apr 1 2020 04:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47089 * 2 1 4 4 H 1.08999 * 109.44036 * 304.91461 * 3 2 1 5 5 O 1.42931 * 109.40535 * 64.81241 * 3 2 1 6 6 C 1.36016 * 116.98491 * 74.62144 * 5 3 2 7 7 C 1.38444 * 120.43814 * 211.23866 * 6 5 3 8 8 C 1.38299 * 119.89659 * 181.45758 * 7 6 5 9 9 C 1.50699 * 119.88039 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47247 * 340.00168 * 9 8 7 11 11 C 1.53006 * 109.46866 * 99.99999 * 9 8 7 12 12 N 1.46500 * 109.46939 * 219.99886 * 9 8 7 13 13 C 1.34781 * 119.99732 * 155.00269 * 12 9 8 14 14 O 1.21587 * 119.99810 * 359.97438 * 13 12 9 15 15 N 1.34776 * 119.99746 * 180.02562 * 13 12 9 16 16 C 1.46502 * 119.99458 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.46701 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00131 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99827 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99996 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47018 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47003 * 120.00113 * 21 19 17 24 24 H 1.48499 * 109.47287 * 240.00452 * 21 19 17 25 25 C 1.38274 * 120.23875 * 0.28530 * 8 7 6 26 26 C 1.38275 * 120.19164 * 359.20315 * 25 8 7 27 27 C 1.38576 * 119.84048 * 0.54617 * 26 25 8 28 28 N 1.40158 * 120.54492 * 180.59711 * 27 26 25 29 29 C 1.34957 * 119.20409 * 168.82982 * 28 27 26 30 30 O 1.21300 * 120.12764 * 174.01713 * 29 28 27 31 31 H 1.08993 * 109.47192 * 299.99941 * 1 2 3 32 32 H 1.08994 * 109.46909 * 60.00162 * 1 2 3 33 33 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47054 * 239.99604 * 2 1 3 35 35 H 1.09003 * 109.47313 * 120.00552 * 2 1 3 36 36 H 1.07994 * 120.05144 * 1.48678 * 7 6 5 37 37 H 1.09001 * 109.47002 * 179.97438 * 11 9 8 38 38 H 1.08993 * 109.46955 * 300.00219 * 11 9 8 39 39 H 1.09000 * 109.47050 * 60.00048 * 11 9 8 40 40 H 0.96998 * 120.00364 * 334.99781 * 12 9 8 41 41 H 0.96998 * 120.00350 * 359.97438 * 15 13 12 42 42 H 1.08999 * 109.47215 * 299.99256 * 16 15 13 43 43 H 1.09001 * 109.47148 * 59.99849 * 16 15 13 44 44 H 0.97000 * 119.99874 * 179.97438 * 20 19 17 45 45 H 1.07998 * 119.90499 * 179.47419 * 25 8 7 46 46 H 1.07996 * 120.07971 * 180.28692 * 26 25 8 47 47 H 0.96997 * 120.39863 * 348.80163 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9806 -0.8428 5 8 1.6574 2.0814 1.2199 6 6 2.3453 1.7341 2.3407 7 6 1.7234 1.7466 3.5775 8 6 2.4415 1.4206 4.7136 9 6 1.7640 1.4338 6.0596 10 1 0.8611 2.0420 6.0060 11 6 1.3927 0.0038 6.4576 12 7 2.6744 1.9981 7.0590 13 6 2.1794 2.5743 8.1724 14 8 0.9772 2.6260 8.3470 15 7 3.0169 3.0940 9.0916 16 6 2.4787 3.7207 10.3015 17 6 3.6151 4.2167 11.1582 18 1 4.6360 4.0792 10.8336 19 6 3.3513 4.8470 12.3558 20 7 2.1081 5.0149 12.7508 21 14 4.7598 5.4612 13.4180 22 1 6.0518 5.1512 12.7546 23 1 4.6377 6.9298 13.6012 24 1 4.7097 4.7913 14.7424 25 6 3.7803 1.0879 4.6195 26 6 4.4057 1.0630 3.3865 27 6 3.6902 1.3836 2.2438 28 7 4.3060 1.3511 0.9852 29 6 3.5427 1.4433 -0.1239 30 8 4.0635 1.5262 -1.2163 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.6789 2.0101 3.6550 37 1 0.9031 0.0132 7.4314 38 1 0.7155 -0.4161 5.7140 39 1 2.2956 -0.6045 6.5113 40 1 3.6334 1.9571 6.9196 41 1 3.9759 3.0530 8.9521 42 1 1.8403 4.5592 10.0231 43 1 1.8950 2.9895 10.8606 44 1 1.9226 5.4579 13.5935 45 1 4.3381 0.8424 5.5111 46 1 5.4502 0.7983 3.3146 47 1 5.2693 1.2638 0.9122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426449779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:14 Heat of formation + Delta-G solvation = -109.305923 kcal Electronic energy + Delta-G solvation = -29831.627830 eV Core-core repulsion = 25592.208095 eV Total energy + Delta-G solvation = -4239.419735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.73271 -41.09938 -40.07077 -39.02735 -37.21988 -36.08947 -35.44817 -34.58157 -34.32477 -32.17103 -31.29266 -29.67868 -28.88662 -28.36436 -25.36943 -24.85476 -24.14099 -23.50948 -22.68157 -21.75717 -20.23500 -20.02013 -19.65285 -19.04434 -18.11163 -17.64981 -17.32371 -16.91349 -16.72926 -16.53261 -16.29075 -16.20270 -15.82488 -15.65031 -15.10283 -14.94067 -14.77720 -14.73415 -14.42987 -14.16357 -14.00309 -13.89150 -13.70637 -13.46158 -13.30891 -13.05801 -12.85039 -12.74120 -12.66353 -12.65786 -12.18926 -12.07355 -11.95816 -11.86800 -11.74544 -11.40942 -11.18029 -11.13231 -10.78481 -10.25208 -9.70843 -9.55308 -8.97792 -8.25617 -6.41382 -0.09023 0.23615 1.10929 1.45549 1.46803 1.59818 1.62803 1.90664 2.18560 2.31375 2.41629 2.63039 2.83003 3.09587 3.54441 3.58053 3.59891 3.60209 3.80372 4.01215 4.13587 4.26467 4.27610 4.36113 4.42152 4.53393 4.64191 4.74710 4.78259 4.93593 4.97474 4.99094 5.04803 5.08672 5.14566 5.31592 5.32784 5.34586 5.37596 5.42889 5.53144 5.54248 5.68955 5.70044 5.74498 5.89428 6.21611 6.31118 6.62838 6.71115 7.28066 7.37030 7.79123 8.86828 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.001913 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.826534 B =14631.046878 C =15336.614367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.079 3.921 4 H 0.161 0.839 5 O -0.304 6.304 6 C 0.072 3.928 7 C -0.101 4.101 8 C -0.076 4.076 9 C 0.204 3.796 10 H 0.074 0.926 11 C -0.152 4.152 12 N -0.726 5.726 13 C 0.694 3.306 14 O -0.646 6.646 15 N -0.724 5.724 16 C 0.286 3.714 17 C -0.552 4.552 18 H 0.084 0.916 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.985 3.015 22 H -0.252 1.252 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.099 4.099 26 C -0.107 4.107 27 C 0.084 3.916 28 N -0.649 5.649 29 C 0.495 3.505 30 O -0.545 6.545 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.409 0.591 41 H 0.405 0.595 42 H -0.016 1.016 43 H -0.014 1.014 44 H 0.268 0.732 45 H 0.153 0.847 46 H 0.165 0.835 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 -13.485 -26.709 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.020 3.980 4 H 0.178 0.822 5 O -0.219 6.219 6 C 0.026 3.974 7 C -0.121 4.121 8 C -0.077 4.077 9 C 0.099 3.901 10 H 0.092 0.908 11 C -0.210 4.210 12 N -0.385 5.385 13 C 0.394 3.606 14 O -0.528 6.528 15 N -0.378 5.378 16 C 0.162 3.838 17 C -0.590 4.590 18 H 0.102 0.898 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.808 3.192 22 H -0.176 1.176 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.011 4.011 28 N -0.296 5.296 29 C 0.282 3.718 30 O -0.422 6.422 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.246 0.754 41 H 0.240 0.760 42 H 0.002 0.998 43 H 0.004 0.996 44 H 0.077 0.923 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.909 -13.164 -27.074 30.358 hybrid contribution 1.453 0.433 0.613 1.635 sum 5.362 -12.731 -26.461 29.850 Atomic orbital electron populations 1.21681 0.92580 1.03057 1.02922 1.22044 0.99133 0.92577 1.04028 1.23147 0.88850 0.98301 0.87703 0.82163 1.86299 1.58534 1.62884 1.14157 1.18516 0.88871 1.02366 0.87663 1.20371 1.01110 1.01639 0.88969 1.19575 0.94786 1.00414 0.92966 1.19522 0.91897 0.95377 0.83288 0.90798 1.22135 1.02717 0.94727 1.01452 1.45062 1.10440 1.63168 1.19796 1.16267 0.85074 0.78469 0.80838 1.90844 1.15745 1.66430 1.79801 1.45289 1.09422 1.61562 1.21480 1.18391 0.94157 0.90430 0.80796 1.21645 0.93516 1.38885 1.04932 0.89762 1.26061 0.98840 0.95661 0.99169 1.70151 1.20956 1.43001 1.22842 0.85110 0.78646 0.77590 0.77832 1.17580 1.20645 1.20534 1.20993 0.93404 0.99137 0.98256 1.20880 1.01398 1.00888 0.89520 1.18148 0.91820 1.04978 0.86191 1.43619 1.11562 1.70596 1.03776 1.21729 0.91655 0.74694 0.83675 1.90797 1.75485 1.48964 1.26954 0.92426 0.91310 0.91018 0.88986 0.91197 0.83969 0.94316 0.89824 0.90576 0.75351 0.76020 0.99770 0.99580 0.92320 0.82925 0.81745 0.73508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.81 71.98 0.71 -0.64 16 2 C -0.14 -1.52 5.44 30.59 0.17 -1.35 16 3 C 0.08 1.12 3.20 29.87 0.10 1.21 16 4 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 5 O -0.30 -5.29 9.68 -93.73 -0.91 -6.20 16 6 C 0.07 1.24 5.84 22.58 0.13 1.37 16 7 C -0.10 -1.78 9.61 22.33 0.21 -1.56 16 8 C -0.08 -1.29 4.96 -19.84 -0.10 -1.39 16 9 C 0.20 4.70 2.77 44.25 0.12 4.82 16 10 H 0.07 2.10 7.43 -2.39 -0.02 2.08 16 11 C -0.15 -3.16 9.46 71.98 0.68 -2.48 16 12 N -0.73 -19.24 5.03 -461.40 -2.32 -21.56 16 13 C 0.69 27.72 8.53 179.05 1.53 29.25 16 14 O -0.65 -32.35 16.01 -3.99 -0.06 -32.41 16 15 N -0.72 -30.27 5.55 -482.28 -2.68 -32.95 16 16 C 0.29 15.64 5.43 85.63 0.46 16.11 16 17 C -0.55 -29.70 9.28 25.60 0.24 -29.46 16 18 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 19 C 0.00 0.12 5.46 84.66 0.46 0.58 16 20 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 21 Si 0.98 41.96 29.54 68.60 2.03 43.98 16 22 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 C -0.10 -1.23 9.05 22.29 0.20 -1.02 16 26 C -0.11 -1.13 9.94 22.36 0.22 -0.91 16 27 C 0.08 1.20 6.57 38.15 0.25 1.45 16 28 N -0.65 -8.96 5.46 -302.89 -1.65 -10.61 16 29 C 0.49 8.66 7.19 87.65 0.63 9.29 16 30 O -0.54 -12.84 17.95 -3.09 -0.06 -12.90 16 31 H 0.06 0.66 7.81 -2.39 -0.02 0.64 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 0.83 7.73 -2.39 -0.02 0.81 16 36 H 0.14 2.41 8.03 -2.91 -0.02 2.39 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.41 7.81 6.85 -92.71 -0.64 7.17 16 41 H 0.40 13.69 8.34 -92.71 -0.77 12.92 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.15 1.30 6.88 -2.91 -0.02 1.28 16 46 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 47 H 0.42 4.18 8.87 -92.71 -0.82 3.36 16 Total: -1.00 -78.60 395.53 -0.55 -79.15 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -1.20 Total: 23.91 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 6.02 Total: 25.27 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.37 Total: -120.80 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -1.03 Total: -51.51 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -78.60 -0.55 -79.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.155 kcal (2) G-P(sol) polarization free energy of solvation -78.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds