Wall clock time and date at job start Wed Apr 1 2020 04:07:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52996 * 109.47089 * 2 1
4 4 H 1.08999 * 109.44036 * 304.91461 * 3 2 1
5 5 O 1.42931 * 109.40535 * 64.81241 * 3 2 1
6 6 C 1.36016 * 116.98491 * 74.62144 * 5 3 2
7 7 C 1.38444 * 120.43814 * 211.23866 * 6 5 3
8 8 C 1.38299 * 119.89659 * 181.45758 * 7 6 5
9 9 C 1.50699 * 119.88039 * 180.02562 * 8 7 6
10 10 H 1.09000 * 109.47247 * 340.00168 * 9 8 7
11 11 C 1.53006 * 109.46866 * 99.99999 * 9 8 7
12 12 N 1.46500 * 109.46939 * 219.99886 * 9 8 7
13 13 C 1.34781 * 119.99732 * 155.00269 * 12 9 8
14 14 O 1.21587 * 119.99810 * 359.97438 * 13 12 9
15 15 N 1.34776 * 119.99746 * 180.02562 * 13 12 9
16 16 C 1.46502 * 119.99458 * 179.97438 * 15 13 12
17 17 C 1.50705 * 109.46701 * 179.97438 * 16 15 13
18 18 H 1.08003 * 120.00131 * 0.02562 * 17 16 15
19 19 C 1.37882 * 119.99827 * 179.97438 * 17 16 15
20 20 N 1.31519 * 119.99996 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99991 * 179.97438 * 19 17 16
22 22 H 1.48510 * 109.47018 * 0.02562 * 21 19 17
23 23 H 1.48502 * 109.47003 * 120.00113 * 21 19 17
24 24 H 1.48499 * 109.47287 * 240.00452 * 21 19 17
25 25 C 1.38274 * 120.23875 * 0.28530 * 8 7 6
26 26 C 1.38275 * 120.19164 * 359.20315 * 25 8 7
27 27 C 1.38576 * 119.84048 * 0.54617 * 26 25 8
28 28 N 1.40158 * 120.54492 * 180.59711 * 27 26 25
29 29 C 1.34957 * 119.20409 * 168.82982 * 28 27 26
30 30 O 1.21300 * 120.12764 * 174.01713 * 29 28 27
31 31 H 1.08993 * 109.47192 * 299.99941 * 1 2 3
32 32 H 1.08994 * 109.46909 * 60.00162 * 1 2 3
33 33 H 1.09004 * 109.47043 * 179.97438 * 1 2 3
34 34 H 1.09005 * 109.47054 * 239.99604 * 2 1 3
35 35 H 1.09003 * 109.47313 * 120.00552 * 2 1 3
36 36 H 1.07994 * 120.05144 * 1.48678 * 7 6 5
37 37 H 1.09001 * 109.47002 * 179.97438 * 11 9 8
38 38 H 1.08993 * 109.46955 * 300.00219 * 11 9 8
39 39 H 1.09000 * 109.47050 * 60.00048 * 11 9 8
40 40 H 0.96998 * 120.00364 * 334.99781 * 12 9 8
41 41 H 0.96998 * 120.00350 * 359.97438 * 15 13 12
42 42 H 1.08999 * 109.47215 * 299.99256 * 16 15 13
43 43 H 1.09001 * 109.47148 * 59.99849 * 16 15 13
44 44 H 0.97000 * 119.99874 * 179.97438 * 20 19 17
45 45 H 1.07998 * 119.90499 * 179.47419 * 25 8 7
46 46 H 1.07996 * 120.07971 * 180.28692 * 26 25 8
47 47 H 0.96997 * 120.39863 * 348.80163 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6063 1.9806 -0.8428
5 8 1.6574 2.0814 1.2199
6 6 2.3453 1.7341 2.3407
7 6 1.7234 1.7466 3.5775
8 6 2.4415 1.4206 4.7136
9 6 1.7640 1.4338 6.0596
10 1 0.8611 2.0420 6.0060
11 6 1.3927 0.0038 6.4576
12 7 2.6744 1.9981 7.0590
13 6 2.1794 2.5743 8.1724
14 8 0.9772 2.6260 8.3470
15 7 3.0169 3.0940 9.0916
16 6 2.4787 3.7207 10.3015
17 6 3.6151 4.2167 11.1582
18 1 4.6360 4.0792 10.8336
19 6 3.3513 4.8470 12.3558
20 7 2.1081 5.0149 12.7508
21 14 4.7598 5.4612 13.4180
22 1 6.0518 5.1512 12.7546
23 1 4.6377 6.9298 13.6012
24 1 4.7097 4.7913 14.7424
25 6 3.7803 1.0879 4.6195
26 6 4.4057 1.0630 3.3865
27 6 3.6902 1.3836 2.2438
28 7 4.3060 1.3511 0.9852
29 6 3.5427 1.4433 -0.1239
30 8 4.0635 1.5262 -1.2163
31 1 -0.3633 0.5138 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8934 -0.5139 -0.8900
35 1 1.8934 -0.5139 0.8899
36 1 0.6789 2.0101 3.6550
37 1 0.9031 0.0132 7.4314
38 1 0.7155 -0.4161 5.7140
39 1 2.2956 -0.6045 6.5113
40 1 3.6334 1.9571 6.9196
41 1 3.9759 3.0530 8.9521
42 1 1.8403 4.5592 10.0231
43 1 1.8950 2.9895 10.8606
44 1 1.9226 5.4579 13.5935
45 1 4.3381 0.8424 5.5111
46 1 5.4502 0.7983 3.3146
47 1 5.2693 1.2638 0.9122
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000426449779.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:07:14
Heat of formation + Delta-G solvation = -109.305923 kcal
Electronic energy + Delta-G solvation = -29831.627830 eV
Core-core repulsion = 25592.208095 eV
Total energy + Delta-G solvation = -4239.419735 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.73271 -41.09938 -40.07077 -39.02735 -37.21988 -36.08947 -35.44817 -34.58157
-34.32477 -32.17103 -31.29266 -29.67868 -28.88662 -28.36436 -25.36943 -24.85476
-24.14099 -23.50948 -22.68157 -21.75717 -20.23500 -20.02013 -19.65285 -19.04434
-18.11163 -17.64981 -17.32371 -16.91349 -16.72926 -16.53261 -16.29075 -16.20270
-15.82488 -15.65031 -15.10283 -14.94067 -14.77720 -14.73415 -14.42987 -14.16357
-14.00309 -13.89150 -13.70637 -13.46158 -13.30891 -13.05801 -12.85039 -12.74120
-12.66353 -12.65786 -12.18926 -12.07355 -11.95816 -11.86800 -11.74544 -11.40942
-11.18029 -11.13231 -10.78481 -10.25208 -9.70843 -9.55308 -8.97792 -8.25617
-6.41382 -0.09023 0.23615 1.10929 1.45549 1.46803 1.59818 1.62803
1.90664 2.18560 2.31375 2.41629 2.63039 2.83003 3.09587 3.54441
3.58053 3.59891 3.60209 3.80372 4.01215 4.13587 4.26467 4.27610
4.36113 4.42152 4.53393 4.64191 4.74710 4.78259 4.93593 4.97474
4.99094 5.04803 5.08672 5.14566 5.31592 5.32784 5.34586 5.37596
5.42889 5.53144 5.54248 5.68955 5.70044 5.74498 5.89428 6.21611
6.31118 6.62838 6.71115 7.28066 7.37030 7.79123 8.86828
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.021194 B = 0.001913 C = 0.001825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1320.826534 B =14631.046878 C =15336.614367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.140 4.140
3 C 0.079 3.921
4 H 0.161 0.839
5 O -0.304 6.304
6 C 0.072 3.928
7 C -0.101 4.101
8 C -0.076 4.076
9 C 0.204 3.796
10 H 0.074 0.926
11 C -0.152 4.152
12 N -0.726 5.726
13 C 0.694 3.306
14 O -0.646 6.646
15 N -0.724 5.724
16 C 0.286 3.714
17 C -0.552 4.552
18 H 0.084 0.916
19 C 0.002 3.998
20 N -0.931 5.931
21 Si 0.985 3.015
22 H -0.252 1.252
23 H -0.281 1.281
24 H -0.280 1.280
25 C -0.099 4.099
26 C -0.107 4.107
27 C 0.084 3.916
28 N -0.649 5.649
29 C 0.495 3.505
30 O -0.545 6.545
31 H 0.057 0.943
32 H 0.068 0.932
33 H 0.071 0.929
34 H 0.092 0.908
35 H 0.069 0.931
36 H 0.143 0.857
37 H 0.038 0.962
38 H 0.083 0.917
39 H 0.075 0.925
40 H 0.409 0.591
41 H 0.405 0.595
42 H -0.016 1.016
43 H -0.014 1.014
44 H 0.268 0.732
45 H 0.153 0.847
46 H 0.165 0.835
47 H 0.424 0.576
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.144 -13.485 -26.709 30.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.178 4.178
3 C 0.020 3.980
4 H 0.178 0.822
5 O -0.219 6.219
6 C 0.026 3.974
7 C -0.121 4.121
8 C -0.077 4.077
9 C 0.099 3.901
10 H 0.092 0.908
11 C -0.210 4.210
12 N -0.385 5.385
13 C 0.394 3.606
14 O -0.528 6.528
15 N -0.378 5.378
16 C 0.162 3.838
17 C -0.590 4.590
18 H 0.102 0.898
19 C -0.197 4.197
20 N -0.569 5.569
21 Si 0.808 3.192
22 H -0.176 1.176
23 H -0.206 1.206
24 H -0.205 1.205
25 C -0.118 4.118
26 C -0.127 4.127
27 C -0.011 4.011
28 N -0.296 5.296
29 C 0.282 3.718
30 O -0.422 6.422
31 H 0.076 0.924
32 H 0.087 0.913
33 H 0.090 0.910
34 H 0.110 0.890
35 H 0.088 0.912
36 H 0.160 0.840
37 H 0.057 0.943
38 H 0.102 0.898
39 H 0.094 0.906
40 H 0.246 0.754
41 H 0.240 0.760
42 H 0.002 0.998
43 H 0.004 0.996
44 H 0.077 0.923
45 H 0.171 0.829
46 H 0.183 0.817
47 H 0.265 0.735
Dipole moment (debyes) X Y Z Total
from point charges 3.909 -13.164 -27.074 30.358
hybrid contribution 1.453 0.433 0.613 1.635
sum 5.362 -12.731 -26.461 29.850
Atomic orbital electron populations
1.21681 0.92580 1.03057 1.02922 1.22044 0.99133 0.92577 1.04028
1.23147 0.88850 0.98301 0.87703 0.82163 1.86299 1.58534 1.62884
1.14157 1.18516 0.88871 1.02366 0.87663 1.20371 1.01110 1.01639
0.88969 1.19575 0.94786 1.00414 0.92966 1.19522 0.91897 0.95377
0.83288 0.90798 1.22135 1.02717 0.94727 1.01452 1.45062 1.10440
1.63168 1.19796 1.16267 0.85074 0.78469 0.80838 1.90844 1.15745
1.66430 1.79801 1.45289 1.09422 1.61562 1.21480 1.18391 0.94157
0.90430 0.80796 1.21645 0.93516 1.38885 1.04932 0.89762 1.26061
0.98840 0.95661 0.99169 1.70151 1.20956 1.43001 1.22842 0.85110
0.78646 0.77590 0.77832 1.17580 1.20645 1.20534 1.20993 0.93404
0.99137 0.98256 1.20880 1.01398 1.00888 0.89520 1.18148 0.91820
1.04978 0.86191 1.43619 1.11562 1.70596 1.03776 1.21729 0.91655
0.74694 0.83675 1.90797 1.75485 1.48964 1.26954 0.92426 0.91310
0.91018 0.88986 0.91197 0.83969 0.94316 0.89824 0.90576 0.75351
0.76020 0.99770 0.99580 0.92320 0.82925 0.81745 0.73508
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.35 9.81 71.98 0.71 -0.64 16
2 C -0.14 -1.52 5.44 30.59 0.17 -1.35 16
3 C 0.08 1.12 3.20 29.87 0.10 1.21 16
4 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16
5 O -0.30 -5.29 9.68 -93.73 -0.91 -6.20 16
6 C 0.07 1.24 5.84 22.58 0.13 1.37 16
7 C -0.10 -1.78 9.61 22.33 0.21 -1.56 16
8 C -0.08 -1.29 4.96 -19.84 -0.10 -1.39 16
9 C 0.20 4.70 2.77 44.25 0.12 4.82 16
10 H 0.07 2.10 7.43 -2.39 -0.02 2.08 16
11 C -0.15 -3.16 9.46 71.98 0.68 -2.48 16
12 N -0.73 -19.24 5.03 -461.40 -2.32 -21.56 16
13 C 0.69 27.72 8.53 179.05 1.53 29.25 16
14 O -0.65 -32.35 16.01 -3.99 -0.06 -32.41 16
15 N -0.72 -30.27 5.55 -482.28 -2.68 -32.95 16
16 C 0.29 15.64 5.43 85.63 0.46 16.11 16
17 C -0.55 -29.70 9.28 25.60 0.24 -29.46 16
18 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16
19 C 0.00 0.12 5.46 84.66 0.46 0.58 16
20 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16
21 Si 0.98 41.96 29.54 68.60 2.03 43.98 16
22 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16
23 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16
24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16
25 C -0.10 -1.23 9.05 22.29 0.20 -1.02 16
26 C -0.11 -1.13 9.94 22.36 0.22 -0.91 16
27 C 0.08 1.20 6.57 38.15 0.25 1.45 16
28 N -0.65 -8.96 5.46 -302.89 -1.65 -10.61 16
29 C 0.49 8.66 7.19 87.65 0.63 9.29 16
30 O -0.54 -12.84 17.95 -3.09 -0.06 -12.90 16
31 H 0.06 0.66 7.81 -2.39 -0.02 0.64 16
32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16
33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16
35 H 0.07 0.83 7.73 -2.39 -0.02 0.81 16
36 H 0.14 2.41 8.03 -2.91 -0.02 2.39 16
37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16
38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
40 H 0.41 7.81 6.85 -92.71 -0.64 7.17 16
41 H 0.40 13.69 8.34 -92.71 -0.77 12.92 16
42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16
43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
44 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16
45 H 0.15 1.30 6.88 -2.91 -0.02 1.28 16
46 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16
47 H 0.42 4.18 8.87 -92.71 -0.82 3.36 16
Total: -1.00 -78.60 395.53 -0.55 -79.15
By element:
Atomic # 1 Polarization: 25.11 SS G_CDS: -1.20 Total: 23.91 kcal
Atomic # 6 Polarization: 19.25 SS G_CDS: 6.02 Total: 25.27 kcal
Atomic # 7 Polarization: -114.43 SS G_CDS: -6.37 Total: -120.80 kcal
Atomic # 8 Polarization: -50.48 SS G_CDS: -1.03 Total: -51.51 kcal
Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal
Total: -78.60 -0.55 -79.15 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426449779.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.155 kcal
(2) G-P(sol) polarization free energy of solvation -78.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.306 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds