Wall clock time and date at job start Wed Apr 1 2020 04:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 H 1.08997 * 109.47024 * 306.17033 * 3 2 1 5 5 C 1.50701 * 109.46920 * 186.17243 * 3 2 1 6 6 H 1.07998 * 120.00076 * 245.09461 * 5 3 2 7 7 C 1.37882 * 119.99964 * 65.09432 * 5 3 2 8 8 N 1.31511 * 120.00227 * 203.89508 * 7 5 3 9 9 Si 1.86804 * 120.00084 * 23.89345 * 7 5 3 10 10 H 1.48496 * 109.47201 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47065 * 300.00177 * 9 7 5 12 12 H 1.48501 * 109.47075 * 60.00027 * 9 7 5 13 13 N 1.46496 * 109.47021 * 66.17389 * 3 2 1 14 14 C 1.34778 * 120.00118 * 274.99878 * 13 3 2 15 15 O 1.21359 * 119.99703 * 359.97438 * 14 13 3 16 16 C 1.49366 * 120.00210 * 180.02562 * 14 13 3 17 17 O 1.21365 * 119.99886 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99809 * 179.97438 * 16 14 13 19 19 C 1.39277 * 119.99795 * 184.40312 * 18 16 14 20 20 C 1.39178 * 119.92972 * 321.35987 * 19 18 16 21 21 C 1.37664 * 120.06521 * 179.72232 * 20 19 18 22 22 C 1.39751 * 119.93081 * 0.54593 * 21 20 19 23 23 C 1.47604 * 120.07144 * 179.70306 * 22 21 20 24 24 O 1.21582 * 120.00398 * 132.24818 * 23 22 21 25 25 N 1.34773 * 119.99968 * 312.25912 * 23 22 21 26 26 C 1.46500 * 120.00231 * 183.88285 * 25 23 22 27 27 C 1.46499 * 120.00191 * 3.87878 * 25 23 22 28 28 C 1.39758 * 119.86288 * 359.72376 * 22 21 20 29 29 C 1.37659 * 119.92819 * 0.02562 * 28 22 21 30 30 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47104 * 300.00409 * 1 2 3 32 32 H 1.09001 * 109.46909 * 59.99767 * 1 2 3 33 33 H 1.09001 * 109.47104 * 239.99591 * 2 1 3 34 34 H 1.09007 * 109.46740 * 119.99829 * 2 1 3 35 35 H 0.97010 * 119.99740 * 354.96963 * 8 7 5 36 36 H 0.96994 * 120.00064 * 95.00556 * 13 3 2 37 37 H 0.96999 * 120.00204 * 4.40588 * 18 16 14 38 38 H 1.07999 * 119.96903 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.03457 * 180.24933 * 21 20 19 40 40 H 1.09004 * 109.47260 * 89.99680 * 26 25 23 41 41 H 1.09002 * 109.47498 * 209.99323 * 26 25 23 42 42 H 1.09002 * 109.47044 * 329.99898 * 26 25 23 43 43 H 1.09005 * 109.47215 * 86.26304 * 27 25 23 44 44 H 1.08991 * 109.47624 * 206.26949 * 27 25 23 45 45 H 1.09007 * 109.47288 * 326.27429 * 27 25 23 46 46 H 1.08001 * 120.03247 * 179.97438 * 28 22 21 47 47 H 1.08005 * 119.96094 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5893 1.9872 -0.8296 5 6 3.5393 1.4451 -0.1528 6 1 4.1632 1.8093 0.6500 7 6 4.1144 0.9826 -1.3175 8 7 5.3530 0.5407 -1.3088 9 14 3.1342 0.9837 -2.9077 10 1 3.9727 0.4407 -4.0064 11 1 1.9247 0.1377 -2.7442 12 1 2.7257 2.3730 -3.2364 13 7 1.6768 2.0889 1.2635 14 6 0.4620 2.6549 1.4060 15 8 -0.3308 2.6296 0.4875 16 6 0.0918 3.3145 2.6940 17 8 0.8848 3.3402 3.6124 18 7 -1.1228 3.8810 2.8363 19 6 -1.4350 4.5753 4.0026 20 6 -0.9926 4.0997 5.2335 21 6 -1.2948 4.7868 6.3874 22 6 -2.0562 5.9569 6.3231 23 6 -2.3875 6.6925 7.5592 24 8 -2.2256 7.8964 7.6121 25 7 -2.8693 6.0298 8.6292 26 6 -3.2782 6.7694 9.8259 27 6 -2.9844 4.5697 8.5957 28 6 -2.5037 6.4288 5.0861 29 6 -2.1939 5.7400 3.9353 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 5.8862 0.6074 -0.5011 36 1 2.3106 2.1095 1.9974 37 1 -1.7795 3.8051 2.1265 38 1 -0.4082 3.1928 5.2830 39 1 -0.9478 4.4194 7.3419 40 1 -4.3319 7.0365 9.7456 41 1 -3.1275 6.1462 10.7074 42 1 -2.6794 7.6758 9.9150 43 1 -2.0379 4.1235 8.9013 44 1 -3.7730 4.2516 9.2775 45 1 -3.2276 4.2475 7.5831 46 1 -3.0927 7.3326 5.0333 47 1 -2.5398 6.1040 2.9791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439562204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:48 Heat of formation + Delta-G solvation = -67.160645 kcal Electronic energy + Delta-G solvation = -29794.101890 eV Core-core repulsion = 25556.509711 eV Total energy + Delta-G solvation = -4237.592179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16822 -40.41259 -39.09624 -37.96133 -35.96837 -35.74775 -34.91124 -32.54662 -31.56652 -31.43368 -30.64917 -28.33431 -27.59864 -26.74247 -25.00206 -23.25226 -22.85711 -22.30944 -20.60315 -20.09328 -19.74748 -18.94521 -17.83890 -17.68036 -17.23731 -16.75714 -16.28265 -16.10197 -15.89315 -15.33357 -14.89440 -14.84104 -14.37750 -14.34228 -13.85635 -13.70285 -13.48719 -13.46723 -13.12892 -13.05970 -12.85186 -12.78500 -12.74246 -12.57054 -12.41561 -12.35548 -11.84279 -11.68688 -11.40558 -10.96877 -10.82934 -10.58547 -10.52270 -10.25639 -9.97767 -9.85493 -9.42666 -9.30896 -9.23228 -9.13976 -8.52590 -8.38957 -8.30223 -6.70265 -4.29875 0.51577 1.06018 1.59222 2.32626 2.46660 2.59668 3.31883 3.33402 3.38533 3.52283 3.53773 3.86113 4.11887 4.34075 4.46580 4.61143 4.65078 4.82570 4.83267 4.87401 4.96722 5.03327 5.11059 5.13799 5.22227 5.24966 5.37838 5.64295 5.75840 5.92977 5.94563 5.96334 5.96837 6.04321 6.07624 6.11884 6.50988 6.56738 6.64509 6.73812 6.84570 6.86854 6.87907 7.11586 7.22430 7.45963 7.66177 7.74911 8.12843 8.20171 8.41603 8.72233 9.37460 10.70933 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.001956 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.842152 B =14314.523925 C =14410.808415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.248 3.752 4 H 0.045 0.955 5 C -0.631 4.631 6 H 0.065 0.935 7 C 0.045 3.955 8 N -0.885 5.885 9 Si 1.037 2.963 10 H -0.282 1.282 11 H -0.272 1.272 12 H -0.279 1.279 13 N -0.659 5.659 14 C 0.495 3.505 15 O -0.530 6.530 16 C 0.509 3.491 17 O -0.500 6.500 18 N -0.653 5.653 19 C 0.171 3.829 20 C -0.123 4.123 21 C -0.070 4.070 22 C -0.149 4.149 23 C 0.563 3.437 24 O -0.534 6.534 25 N -0.619 5.619 26 C 0.084 3.916 27 C 0.073 3.927 28 C -0.048 4.048 29 C -0.144 4.144 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.272 0.728 36 H 0.406 0.594 37 H 0.425 0.575 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.660 6.409 17.880 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.146 3.854 4 H 0.063 0.937 5 C -0.668 4.668 6 H 0.083 0.917 7 C -0.164 4.164 8 N -0.517 5.517 9 Si 0.864 3.136 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.205 1.205 13 N -0.308 5.308 14 C 0.274 3.726 15 O -0.409 6.409 16 C 0.292 3.708 17 O -0.372 6.372 18 N -0.300 5.300 19 C 0.076 3.924 20 C -0.143 4.143 21 C -0.089 4.089 22 C -0.153 4.153 23 C 0.352 3.648 24 O -0.411 6.411 25 N -0.353 5.353 26 C -0.058 4.058 27 C -0.069 4.069 28 C -0.068 4.068 29 C -0.165 4.165 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.264 0.736 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.152 0.848 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.387 6.533 16.255 26.130 hybrid contribution 0.025 0.378 1.747 1.788 sum -19.361 6.911 18.002 27.326 Atomic orbital electron populations 1.21913 0.97385 0.99273 1.01737 1.22285 0.93689 0.99277 1.02074 1.19248 0.96492 0.88780 0.80911 0.93690 1.21975 0.89313 1.50739 1.04763 0.91730 1.25669 0.97584 0.91489 1.01625 1.70887 1.10706 1.36697 1.33399 0.84106 0.75828 0.77652 0.75986 1.20704 1.19770 1.20543 1.46236 1.13213 1.52489 1.18857 1.19615 0.84532 0.81395 0.87089 1.90742 1.50016 1.59344 1.40759 1.20961 0.81531 0.78798 0.89537 1.90759 1.49594 1.55590 1.41293 1.43174 1.15883 1.52375 1.18615 1.17940 0.96804 0.91578 0.86088 1.21203 1.01362 1.01536 0.90246 1.21228 0.96009 0.92896 0.98781 1.19766 1.04337 0.97692 0.93505 1.18380 0.76509 0.86815 0.83064 1.90798 1.52947 1.14350 1.82998 1.47661 1.64396 1.07892 1.15311 1.21675 1.00346 0.97719 0.86079 1.22038 1.02039 0.79112 1.03753 1.20889 0.97417 0.98378 0.90098 1.20940 1.02302 0.93832 0.99398 0.94680 0.93630 0.92807 0.91172 0.92769 0.91805 0.75853 0.73642 0.83863 0.84901 0.92574 0.91052 0.90308 0.92133 0.90777 0.90272 0.84785 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.54 37.16 0.32 -2.38 16 2 C -0.13 -2.84 5.33 -26.73 -0.14 -2.98 16 3 C 0.25 5.64 1.83 -69.08 -0.13 5.51 16 4 H 0.05 1.09 6.17 -51.93 -0.32 0.77 16 5 C -0.63 -16.50 8.95 -34.44 -0.31 -16.81 16 6 H 0.06 1.79 7.96 -52.49 -0.42 1.37 16 7 C 0.04 1.22 5.19 -17.82 -0.09 1.12 16 8 N -0.89 -25.56 13.70 55.43 0.76 -24.80 16 9 Si 1.04 24.00 26.47 -169.99 -4.50 19.50 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -5.85 6.15 56.52 0.35 -5.50 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.66 -13.01 5.03 -55.39 -0.28 -13.29 16 14 C 0.50 8.81 6.51 -11.62 -0.08 8.73 16 15 O -0.53 -10.01 13.63 5.49 0.07 -9.93 16 16 C 0.51 7.74 7.70 -11.63 -0.09 7.65 16 17 O -0.50 -8.35 14.13 5.48 0.08 -8.27 16 18 N -0.65 -7.80 5.29 -10.28 -0.05 -7.86 16 19 C 0.17 1.91 6.23 -83.78 -0.52 1.39 16 20 C -0.12 -1.37 8.65 -39.44 -0.34 -1.71 16 21 C -0.07 -0.66 7.72 -39.23 -0.30 -0.97 16 22 C -0.15 -1.53 4.92 -104.94 -0.52 -2.05 16 23 C 0.56 6.25 7.24 -12.44 -0.09 6.16 16 24 O -0.53 -7.81 16.57 5.29 0.09 -7.73 16 25 N -0.62 -4.92 3.27 -190.73 -0.62 -5.54 16 26 C 0.08 0.52 10.45 59.85 0.63 1.15 16 27 C 0.07 0.36 9.04 59.85 0.54 0.90 16 28 C -0.05 -0.47 9.70 -39.22 -0.38 -0.85 16 29 C -0.14 -1.38 9.95 -39.45 -0.39 -1.77 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.82 5.62 -51.93 -0.29 0.53 16 32 H 0.05 1.02 7.91 -51.93 -0.41 0.61 16 33 H 0.07 1.55 5.46 -51.93 -0.28 1.27 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 36 H 0.41 7.74 8.00 -40.82 -0.33 7.42 16 37 H 0.43 4.32 8.30 -40.82 -0.34 3.99 16 38 H 0.14 1.70 6.49 -52.49 -0.34 1.36 16 39 H 0.13 0.99 6.23 -52.49 -0.33 0.67 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 42 H 0.08 0.61 7.37 -51.93 -0.38 0.23 16 43 H 0.06 0.25 7.08 -51.93 -0.37 -0.12 16 44 H 0.07 0.23 8.04 -51.93 -0.42 -0.19 16 45 H 0.08 0.41 6.17 -51.93 -0.32 0.09 16 46 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 47 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -32.37 384.51 -6.84 -39.21 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.28 Total: 9.81 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.90 Total: 3.10 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.20 Total: -51.49 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: 0.24 Total: -25.93 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -4.50 Total: 19.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.37 -6.84 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439562204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.950 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds