Wall clock time and date at job start Wed Apr 1 2020 04:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 H 1.08997 * 109.47024 * 306.17033 * 3 2 1 5 5 C 1.50701 * 109.46920 * 186.17243 * 3 2 1 6 6 H 1.07998 * 120.00076 * 245.09461 * 5 3 2 7 7 C 1.37882 * 119.99964 * 65.09432 * 5 3 2 8 8 N 1.31511 * 120.00227 * 203.89508 * 7 5 3 9 9 Si 1.86804 * 120.00084 * 23.89345 * 7 5 3 10 10 H 1.48496 * 109.47201 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47065 * 300.00177 * 9 7 5 12 12 H 1.48501 * 109.47075 * 60.00027 * 9 7 5 13 13 N 1.46496 * 109.47021 * 66.17389 * 3 2 1 14 14 C 1.34778 * 120.00118 * 274.99878 * 13 3 2 15 15 O 1.21359 * 119.99703 * 359.97438 * 14 13 3 16 16 C 1.49366 * 120.00210 * 180.02562 * 14 13 3 17 17 O 1.21365 * 119.99886 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99809 * 179.97438 * 16 14 13 19 19 C 1.39277 * 119.99795 * 184.40312 * 18 16 14 20 20 C 1.39178 * 119.92972 * 321.35987 * 19 18 16 21 21 C 1.37664 * 120.06521 * 179.72232 * 20 19 18 22 22 C 1.39751 * 119.93081 * 0.54593 * 21 20 19 23 23 C 1.47604 * 120.07144 * 179.70306 * 22 21 20 24 24 O 1.21582 * 120.00398 * 132.24818 * 23 22 21 25 25 N 1.34773 * 119.99968 * 312.25912 * 23 22 21 26 26 C 1.46500 * 120.00231 * 183.88285 * 25 23 22 27 27 C 1.46499 * 120.00191 * 3.87878 * 25 23 22 28 28 C 1.39758 * 119.86288 * 359.72376 * 22 21 20 29 29 C 1.37659 * 119.92819 * 0.02562 * 28 22 21 30 30 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47104 * 300.00409 * 1 2 3 32 32 H 1.09001 * 109.46909 * 59.99767 * 1 2 3 33 33 H 1.09001 * 109.47104 * 239.99591 * 2 1 3 34 34 H 1.09007 * 109.46740 * 119.99829 * 2 1 3 35 35 H 0.97010 * 119.99740 * 354.96963 * 8 7 5 36 36 H 0.96994 * 120.00064 * 95.00556 * 13 3 2 37 37 H 0.96999 * 120.00204 * 4.40588 * 18 16 14 38 38 H 1.07999 * 119.96903 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.03457 * 180.24933 * 21 20 19 40 40 H 1.09004 * 109.47260 * 89.99680 * 26 25 23 41 41 H 1.09002 * 109.47498 * 209.99323 * 26 25 23 42 42 H 1.09002 * 109.47044 * 329.99898 * 26 25 23 43 43 H 1.09005 * 109.47215 * 86.26304 * 27 25 23 44 44 H 1.08991 * 109.47624 * 206.26949 * 27 25 23 45 45 H 1.09007 * 109.47288 * 326.27429 * 27 25 23 46 46 H 1.08001 * 120.03247 * 179.97438 * 28 22 21 47 47 H 1.08005 * 119.96094 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5893 1.9872 -0.8296 5 6 3.5393 1.4451 -0.1528 6 1 4.1632 1.8093 0.6500 7 6 4.1144 0.9826 -1.3175 8 7 5.3530 0.5407 -1.3088 9 14 3.1342 0.9837 -2.9077 10 1 3.9727 0.4407 -4.0064 11 1 1.9247 0.1377 -2.7442 12 1 2.7257 2.3730 -3.2364 13 7 1.6768 2.0889 1.2635 14 6 0.4620 2.6549 1.4060 15 8 -0.3308 2.6296 0.4875 16 6 0.0918 3.3145 2.6940 17 8 0.8848 3.3402 3.6124 18 7 -1.1228 3.8810 2.8363 19 6 -1.4350 4.5753 4.0026 20 6 -0.9926 4.0997 5.2335 21 6 -1.2948 4.7868 6.3874 22 6 -2.0562 5.9569 6.3231 23 6 -2.3875 6.6925 7.5592 24 8 -2.2256 7.8964 7.6121 25 7 -2.8693 6.0298 8.6292 26 6 -3.2782 6.7694 9.8259 27 6 -2.9844 4.5697 8.5957 28 6 -2.5037 6.4288 5.0861 29 6 -2.1939 5.7400 3.9353 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 5.8862 0.6074 -0.5011 36 1 2.3106 2.1095 1.9974 37 1 -1.7795 3.8051 2.1265 38 1 -0.4082 3.1928 5.2830 39 1 -0.9478 4.4194 7.3419 40 1 -4.3319 7.0365 9.7456 41 1 -3.1275 6.1462 10.7074 42 1 -2.6794 7.6758 9.9150 43 1 -2.0379 4.1235 8.9013 44 1 -3.7730 4.2516 9.2775 45 1 -3.2276 4.2475 7.5831 46 1 -3.0927 7.3326 5.0333 47 1 -2.5398 6.1040 2.9791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439562204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:47 Heat of formation + Delta-G solvation = -90.543346 kcal Electronic energy + Delta-G solvation = -29795.115840 eV Core-core repulsion = 25556.509711 eV Total energy + Delta-G solvation = -4238.606129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26110 -41.34793 -40.31933 -39.02760 -37.32857 -36.69057 -36.04073 -34.48914 -33.16917 -32.22037 -31.50767 -29.37755 -28.82382 -27.50751 -26.16401 -24.39057 -24.02006 -23.59029 -21.96815 -21.32112 -20.84910 -20.38723 -19.29712 -18.58309 -18.40250 -17.70181 -17.44113 -17.26818 -16.97217 -16.55468 -15.96568 -15.70044 -15.59275 -15.32667 -15.19766 -14.89830 -14.55241 -14.54142 -14.43544 -14.28782 -14.00429 -13.79804 -13.72696 -13.56977 -13.43772 -13.38131 -12.88175 -12.82936 -12.64659 -12.49842 -12.37519 -12.26090 -11.77568 -11.55459 -11.50799 -11.25285 -11.12317 -10.71746 -10.38421 -10.08209 -10.03167 -9.77756 -9.39897 -8.84823 -6.44709 -0.37721 0.28769 0.36460 1.22015 1.47893 1.53068 1.54240 1.72191 1.96474 2.08551 2.42490 2.62372 2.64034 2.96519 3.38413 3.43047 3.75998 3.84428 4.17453 4.25874 4.30143 4.30803 4.35570 4.38783 4.42301 4.47234 4.50296 4.72025 4.79769 4.86472 4.89159 4.93274 4.96873 5.08850 5.12509 5.14536 5.19125 5.24056 5.24172 5.41069 5.43916 5.52095 5.62257 5.73405 5.89898 5.98658 6.19951 6.42791 6.49917 6.67070 6.97143 6.98129 7.30097 8.54985 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.001956 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.842152 B =14314.523925 C =14410.808415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.253 3.747 4 H 0.037 0.963 5 C -0.629 4.629 6 H 0.036 0.964 7 C 0.000 4.000 8 N -0.917 5.917 9 Si 1.071 2.929 10 H -0.283 1.283 11 H -0.244 1.244 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.499 3.501 15 O -0.537 6.537 16 C 0.517 3.483 17 O -0.518 6.518 18 N -0.634 5.634 19 C 0.151 3.849 20 C -0.131 4.131 21 C -0.062 4.062 22 C -0.152 4.152 23 C 0.557 3.443 24 O -0.580 6.580 25 N -0.613 5.613 26 C 0.079 3.921 27 C 0.066 3.934 28 C -0.054 4.054 29 C -0.133 4.133 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.258 0.742 36 H 0.408 0.592 37 H 0.434 0.566 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.143 0.857 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.519 6.192 18.576 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.149 3.851 4 H 0.055 0.945 5 C -0.667 4.667 6 H 0.054 0.946 7 C -0.202 4.202 8 N -0.550 5.550 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.168 1.168 12 H -0.195 1.195 13 N -0.318 5.318 14 C 0.279 3.721 15 O -0.416 6.416 16 C 0.299 3.701 17 O -0.393 6.393 18 N -0.281 5.281 19 C 0.057 3.943 20 C -0.151 4.151 21 C -0.081 4.081 22 C -0.156 4.156 23 C 0.346 3.654 24 O -0.461 6.461 25 N -0.345 5.345 26 C -0.062 4.062 27 C -0.075 4.075 28 C -0.073 4.073 29 C -0.153 4.153 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.243 0.757 37 H 0.275 0.725 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.161 0.839 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.316 6.301 17.003 28.754 hybrid contribution 0.854 0.508 1.704 1.972 sum -21.462 6.809 18.706 29.273 Atomic orbital electron populations 1.21810 0.94978 1.00926 1.01658 1.22178 0.95767 0.97650 1.01523 1.18975 0.93946 0.90098 0.82052 0.94526 1.22153 0.91372 1.49460 1.03699 0.94600 1.26891 0.97705 0.90942 1.04691 1.71000 1.11846 1.39330 1.32846 0.83692 0.75760 0.78713 0.72634 1.20892 1.16815 1.19455 1.46056 1.14363 1.53440 1.17989 1.19925 0.83544 0.80605 0.88011 1.90730 1.50046 1.59350 1.41454 1.20319 0.82458 0.79173 0.88114 1.90765 1.50458 1.56671 1.41374 1.42961 1.14721 1.51268 1.19192 1.18097 0.98112 0.92451 0.85634 1.21211 1.01524 1.01562 0.90840 1.21338 0.95277 0.92318 0.99175 1.19882 1.04335 0.97753 0.93617 1.18562 0.76540 0.86355 0.83948 1.90774 1.55329 1.16165 1.83859 1.47823 1.62630 1.09242 1.14793 1.21833 1.00416 0.97546 0.86445 1.22275 1.03701 0.77105 1.04466 1.21081 0.97463 0.98697 0.90045 1.21106 1.01079 0.92797 1.00325 0.92198 0.93347 0.93176 0.92198 0.92927 0.93212 0.75712 0.72516 0.84784 0.82992 0.91672 0.88065 0.92277 0.90887 0.88270 0.90479 0.83890 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 8.54 71.98 0.61 -4.09 16 2 C -0.13 -5.41 5.33 30.59 0.16 -5.25 16 3 C 0.25 11.37 1.83 44.25 0.08 11.45 16 4 H 0.04 1.73 6.17 -2.39 -0.01 1.72 16 5 C -0.63 -33.54 8.95 25.60 0.23 -33.31 16 6 H 0.04 2.07 7.96 -2.91 -0.02 2.05 16 7 C 0.00 -0.01 5.19 84.66 0.44 0.43 16 8 N -0.92 -54.29 13.70 21.45 0.29 -53.99 16 9 Si 1.07 47.83 26.47 68.60 1.82 49.64 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.24 -9.76 6.15 99.48 0.61 -9.15 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 N -0.67 -26.21 5.03 -447.52 -2.25 -28.46 16 14 C 0.50 17.16 6.51 87.24 0.57 17.73 16 15 O -0.54 -19.28 13.63 -3.27 -0.04 -19.33 16 16 C 0.52 15.09 7.70 87.24 0.67 15.76 16 17 O -0.52 -16.96 14.13 -3.29 -0.05 -17.00 16 18 N -0.63 -13.95 5.29 -304.81 -1.61 -15.56 16 19 C 0.15 3.11 6.23 38.41 0.24 3.35 16 20 C -0.13 -2.72 8.65 22.36 0.19 -2.52 16 21 C -0.06 -1.08 7.72 22.50 0.17 -0.90 16 22 C -0.15 -2.91 4.92 -20.07 -0.10 -3.01 16 23 C 0.56 11.84 7.24 86.72 0.63 12.47 16 24 O -0.58 -17.05 16.57 -3.97 -0.07 -17.11 16 25 N -0.61 -8.63 3.27 -875.62 -2.87 -11.50 16 26 C 0.08 0.85 10.45 127.77 1.34 2.18 16 27 C 0.07 0.47 9.04 127.77 1.15 1.63 16 28 C -0.05 -0.96 9.70 22.50 0.22 -0.74 16 29 C -0.13 -2.24 9.95 22.36 0.22 -2.02 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.62 5.62 -2.39 -0.01 1.61 16 32 H 0.05 1.76 7.91 -2.39 -0.02 1.74 16 33 H 0.06 2.56 5.46 -2.39 -0.01 2.54 16 34 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.26 15.46 8.73 -92.70 -0.81 14.65 16 36 H 0.41 15.72 8.00 -92.71 -0.74 14.98 16 37 H 0.43 7.82 8.30 -92.71 -0.77 7.05 16 38 H 0.13 3.06 6.49 -2.91 -0.02 3.04 16 39 H 0.15 1.95 6.23 -2.91 -0.02 1.93 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.10 0.47 8.07 -2.39 -0.02 0.45 16 42 H 0.06 0.89 7.37 -2.39 -0.02 0.87 16 43 H 0.07 0.38 7.08 -2.38 -0.02 0.36 16 44 H 0.10 0.25 8.04 -2.39 -0.02 0.23 16 45 H 0.08 0.62 6.17 -2.38 -0.01 0.60 16 46 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -71.14 384.51 1.45 -69.69 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.61 Total: 30.46 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.83 Total: 13.16 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -6.43 Total: -109.51 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.16 Total: -53.44 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.82 Total: 49.64 kcal Total: -71.14 1.45 -69.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439562204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.853 kcal (2) G-P(sol) polarization free energy of solvation -71.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds