Wall clock time and date at job start Wed Apr 1 2020 04:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.46802 * 2 1 4 4 C 1.34226 * 117.00005 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00286 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99918 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47386 * 60.00338 * 6 4 3 8 8 N 1.46508 * 109.47106 * 180.02562 * 6 4 3 9 9 S 1.65598 * 120.00068 * 215.00260 * 8 6 4 10 10 O 1.42104 * 104.27569 * 308.92569 * 9 8 6 11 11 O 1.42102 * 104.27715 * 181.07232 * 9 8 6 12 12 C 1.81394 * 104.44995 * 64.99872 * 9 8 6 13 13 C 1.52996 * 109.47274 * 181.13237 * 12 9 8 14 14 C 1.50705 * 115.55119 * 294.68831 * 13 12 9 15 15 H 1.07997 * 120.00204 * 95.18736 * 14 13 12 16 16 C 1.37880 * 119.99717 * 274.91575 * 14 13 12 17 17 N 1.31515 * 120.00002 * 6.44517 * 16 14 13 18 18 Si 1.86796 * 119.99995 * 186.45182 * 16 14 13 19 19 H 1.48502 * 109.47056 * 89.99686 * 18 16 14 20 20 H 1.48497 * 109.47236 * 209.99611 * 18 16 14 21 21 H 1.48494 * 109.47246 * 330.00105 * 18 16 14 22 22 C 1.53001 * 117.50097 * 80.35449 * 13 12 9 23 23 C 1.52998 * 117.50418 * 149.01490 * 13 12 9 24 24 C 1.52998 * 109.47586 * 300.00139 * 6 4 3 25 25 H 1.09002 * 109.47463 * 184.99929 * 24 6 4 26 26 C 1.53001 * 109.46975 * 64.99981 * 24 6 4 27 27 C 1.53006 * 109.47273 * 305.00329 * 24 6 4 28 28 C 1.52994 * 109.47277 * 184.99465 * 27 24 6 29 29 H 1.08990 * 109.47377 * 60.00262 * 1 2 3 30 30 H 1.09006 * 109.46727 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46891 * 299.99725 * 1 2 3 32 32 H 1.08994 * 109.47310 * 240.00137 * 2 1 3 33 33 H 1.09001 * 109.47071 * 119.99427 * 2 1 3 34 34 H 0.97001 * 119.99685 * 35.00197 * 8 6 4 35 35 H 1.08998 * 109.47196 * 61.13562 * 12 9 8 36 36 H 1.08995 * 109.47433 * 301.13458 * 12 9 8 37 37 H 0.97007 * 120.00067 * 185.08509 * 17 16 14 38 38 H 1.09004 * 117.50150 * 215.00633 * 22 13 12 39 39 H 1.09005 * 117.49603 * 0.02562 * 22 13 12 40 40 H 1.09008 * 117.49820 * 359.97438 * 23 13 12 41 41 H 1.08995 * 117.50619 * 144.97093 * 23 13 12 42 42 H 1.09002 * 109.46983 * 300.00242 * 26 24 6 43 43 H 1.08997 * 109.47345 * 60.00083 * 26 24 6 44 44 H 1.08999 * 109.47224 * 180.02562 * 26 24 6 45 45 H 1.08998 * 109.46863 * 304.99446 * 27 24 6 46 46 H 1.09004 * 109.47082 * 64.99360 * 27 24 6 47 47 H 1.08997 * 109.47060 * 179.97438 * 28 27 24 48 48 H 1.09004 * 109.47346 * 300.00219 * 28 27 24 49 49 H 1.09004 * 109.47150 * 59.99937 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5869 0.0005 6 6 3.9205 2.9376 0.0000 7 1 3.5842 3.4702 0.8895 8 7 5.3836 2.8610 0.0001 9 16 6.2718 3.9912 0.8223 10 8 5.7621 5.2368 0.3664 11 8 7.6219 3.6194 0.5806 12 6 5.8406 3.7260 2.5642 13 6 6.5851 4.7409 3.4341 14 6 8.0858 4.6039 3.4528 15 1 8.6908 5.1989 2.7847 16 6 8.6867 3.7229 4.3268 17 7 7.9495 2.9117 5.0535 18 14 10.5480 3.6817 4.4789 19 1 10.9798 4.6346 5.5329 20 1 10.9847 2.3099 4.8430 21 1 11.1594 4.0680 3.1820 22 6 6.0035 6.1530 3.5271 23 6 5.9019 5.2027 4.7228 24 6 3.4496 3.6838 -1.2499 25 1 3.9358 4.6583 -1.2961 26 6 1.9325 3.8732 -1.1894 27 6 3.8130 2.8729 -2.4954 28 6 3.4548 3.6745 -3.7483 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 5.8320 2.1482 -0.4814 35 1 6.1256 2.7163 2.8594 36 1 4.7662 3.8535 2.6960 37 1 8.3663 2.3445 5.7209 38 1 6.7063 6.9829 3.6017 39 1 5.0902 6.3588 2.9688 40 1 4.9216 4.7839 4.9507 41 1 6.5376 5.4070 5.5842 42 1 1.4463 2.8988 -1.1431 43 1 1.6736 4.4509 -0.3021 44 1 1.5969 4.4045 -2.0800 45 1 4.8824 2.6620 -2.4923 46 1 3.2576 1.9349 -2.4931 47 1 3.7142 3.0970 -4.6356 48 1 2.3854 3.8855 -3.7514 49 1 4.0102 4.6125 -3.7507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451287129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:08 Heat of formation + Delta-G solvation = -149.863247 kcal Electronic energy + Delta-G solvation = -30827.395827 eV Core-core repulsion = 26689.368594 eV Total energy + Delta-G solvation = -4138.027232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92063 -37.70122 -36.78802 -36.67023 -36.23016 -35.15636 -33.62569 -32.03588 -31.99665 -30.04023 -28.23614 -26.86604 -25.46288 -24.49221 -23.26570 -21.71708 -21.24421 -20.21227 -19.73186 -18.66916 -17.78974 -17.38629 -16.84448 -16.54222 -16.44737 -15.53690 -15.08467 -14.98265 -14.72848 -14.67951 -14.41390 -13.85454 -13.79575 -13.58574 -13.18201 -13.14319 -13.01052 -12.75775 -12.21622 -12.09663 -11.99114 -11.92581 -11.85471 -11.72382 -11.38880 -11.36151 -11.26178 -11.19256 -11.07914 -10.90911 -10.89136 -10.69139 -10.64920 -10.61543 -10.48608 -10.35175 -10.13366 -9.77761 -9.39742 -8.96614 -8.55316 -8.13178 -6.14030 -4.24458 0.95443 2.06412 2.39256 3.30605 3.31452 3.37759 3.45578 4.35803 4.39047 4.45252 4.52295 4.62042 4.68305 4.72701 4.84754 4.96544 4.99756 5.01910 5.13940 5.16699 5.27361 5.36867 5.45067 5.50647 5.52583 5.55218 5.63203 5.68270 5.73567 5.88335 5.93605 5.95371 5.98357 6.04890 6.20168 6.21915 6.29038 6.34593 6.40908 6.57980 6.68613 6.96323 7.13079 7.21753 7.37170 7.61382 7.81086 8.18550 8.81989 9.47467 10.94343 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.003611 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.321702 B = 7753.278326 C = 8306.979444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.349 6.349 4 C 0.462 3.538 5 O -0.494 6.494 6 C 0.172 3.828 7 H 0.119 0.881 8 N -1.115 6.115 9 S 2.605 3.395 10 O -0.967 6.967 11 O -0.939 6.939 12 C -0.556 4.556 13 C 0.042 3.958 14 C -0.512 4.512 15 H 0.070 0.930 16 C 0.080 3.920 17 N -0.874 5.874 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.209 4.209 23 C -0.139 4.139 24 C -0.106 4.106 25 H 0.108 0.892 26 C -0.159 4.159 27 C -0.123 4.123 28 C -0.150 4.150 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.420 0.580 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.263 0.737 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.660 -3.251 -11.541 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.266 6.266 4 C 0.302 3.698 5 O -0.380 6.380 6 C 0.061 3.939 7 H 0.136 0.864 8 N -0.871 5.871 9 S 2.702 3.298 10 O -0.957 6.957 11 O -0.929 6.929 12 C -0.689 4.689 13 C 0.039 3.961 14 C -0.549 4.549 15 H 0.088 0.912 16 C -0.124 4.124 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.247 4.247 23 C -0.178 4.178 24 C -0.126 4.126 25 H 0.126 0.874 26 C -0.217 4.217 27 C -0.161 4.161 28 C -0.208 4.208 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.255 0.745 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.936 -3.038 -11.799 20.060 hybrid contribution 0.786 -1.166 0.679 1.562 sum -15.150 -4.204 -11.120 19.258 Atomic orbital electron populations 1.21803 0.92544 1.02931 1.03587 1.23072 0.95407 0.80522 1.02748 1.86581 1.24057 1.32004 1.83908 1.23822 0.80900 0.92630 0.72413 1.90678 1.60335 1.42532 1.44451 1.20347 0.81567 0.90024 1.01935 0.86354 1.56140 1.12551 1.49167 1.69273 1.05353 0.73727 0.73280 0.77455 1.93507 1.80843 1.41561 1.79817 1.93580 1.32447 1.82337 1.84554 1.30034 1.06674 1.11522 1.20679 1.18291 0.93811 0.87899 0.96072 1.20548 0.88203 1.23437 1.22753 0.91233 1.24946 0.98521 0.93681 0.95300 1.70010 1.35819 1.22852 1.22291 0.86587 0.85380 0.77409 0.78909 1.20459 1.21021 1.19067 1.23231 1.01991 0.95140 1.04316 1.22540 0.99689 1.02703 0.92889 1.21743 0.97760 1.00697 0.92444 0.87371 1.22081 0.93983 1.03281 1.02314 1.21606 1.01900 0.98249 0.94331 1.21785 1.01670 1.00400 0.96917 0.91462 0.90351 0.91326 0.91256 0.91068 0.74470 0.84525 0.88608 0.92766 0.89423 0.90589 0.91537 0.89489 0.90595 0.92083 0.91841 0.91347 0.92526 0.92904 0.92375 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.35 -3.81 7.36 -39.25 -0.29 -4.10 16 4 C 0.46 6.13 5.89 36.01 0.21 6.34 16 5 O -0.49 -7.81 15.74 -18.75 -0.30 -8.11 16 6 C 0.17 2.28 2.39 -69.08 -0.17 2.11 16 7 H 0.12 1.40 7.13 -51.93 -0.37 1.03 16 8 N -1.11 -17.53 4.61 -5.88 -0.03 -17.56 16 9 S 2.60 51.92 5.18 -107.50 -0.56 51.36 16 10 O -0.97 -19.78 17.05 -57.54 -0.98 -20.76 16 11 O -0.94 -22.51 17.48 -57.54 -1.01 -23.52 16 12 C -0.56 -11.63 5.83 37.16 0.22 -11.41 16 13 C 0.04 1.01 1.33 -155.66 -0.21 0.80 16 14 C -0.51 -14.01 7.97 -34.44 -0.27 -14.29 16 15 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 16 C 0.08 2.21 5.39 -17.82 -0.10 2.11 16 17 N -0.87 -24.26 12.93 55.43 0.72 -23.54 16 18 Si 0.89 21.55 29.55 -169.99 -5.02 16.53 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.21 -4.47 9.96 -26.69 -0.27 -4.74 16 23 C -0.14 -3.12 9.43 -26.70 -0.25 -3.37 16 24 C -0.11 -1.24 2.37 -90.62 -0.21 -1.45 16 25 H 0.11 1.40 7.36 -51.93 -0.38 1.02 16 26 C -0.16 -1.48 8.59 37.16 0.32 -1.16 16 27 C -0.12 -1.35 4.91 -26.73 -0.13 -1.48 16 28 C -0.15 -1.39 9.67 37.15 0.36 -1.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 33 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.42 6.36 7.89 -34.47 -0.27 6.09 16 35 H 0.14 3.06 8.14 -51.93 -0.42 2.64 16 36 H 0.10 1.64 7.36 -51.93 -0.38 1.26 16 37 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 38 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 41 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.08 0.68 5.46 -51.93 -0.28 0.40 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.52 6.56 -51.93 -0.34 0.17 16 45 H 0.07 0.81 7.41 -51.93 -0.38 0.43 16 46 H 0.06 0.60 7.28 -51.93 -0.38 0.22 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 406.41 15.07 6.12 6.12 Total: -1.00 -33.03 406.41 -9.40 -42.43 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.18 Total: 8.51 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 0.11 Total: -27.38 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.69 Total: -41.10 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -2.57 Total: -56.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 51.92 SS G_CDS: -0.56 Total: 51.36 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.03 -9.40 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451287129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.433 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds