Wall clock time and date at job start Wed Apr 1 2020 04:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46773 * 2 1 4 4 C 1.34227 * 116.99845 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00296 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99816 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47092 * 299.99907 * 6 4 3 8 8 N 1.46496 * 109.46916 * 180.02562 * 6 4 3 9 9 S 1.65596 * 120.00438 * 98.23178 * 8 6 4 10 10 O 1.42093 * 104.27861 * 178.49548 * 9 8 6 11 11 O 1.42106 * 104.27357 * 306.35284 * 9 8 6 12 12 C 1.81398 * 104.44971 * 62.42201 * 9 8 6 13 13 C 1.52999 * 109.47031 * 178.89506 * 12 9 8 14 14 C 1.50700 * 115.54997 * 58.70225 * 13 12 9 15 15 H 1.08004 * 119.99674 * 264.61283 * 14 13 12 16 16 C 1.37873 * 120.00251 * 84.62154 * 14 13 12 17 17 N 1.31514 * 120.00316 * 2.10733 * 16 14 13 18 18 Si 1.86803 * 120.00136 * 182.11594 * 16 14 13 19 19 H 1.48497 * 109.47318 * 89.99314 * 18 16 14 20 20 H 1.48502 * 109.46970 * 209.99688 * 18 16 14 21 21 H 1.48506 * 109.46764 * 329.99504 * 18 16 14 22 22 C 1.53000 * 117.49710 * 273.02932 * 13 12 9 23 23 C 1.53006 * 117.49884 * 204.36970 * 13 12 9 24 24 C 1.52998 * 109.47031 * 60.00247 * 6 4 3 25 25 H 1.08997 * 109.47481 * 304.81025 * 24 6 4 26 26 C 1.53002 * 109.47000 * 184.81288 * 24 6 4 27 27 C 1.52997 * 109.47326 * 64.81183 * 24 6 4 28 28 C 1.53001 * 109.47408 * 184.99792 * 27 24 6 29 29 H 1.09001 * 109.46460 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46860 * 299.99352 * 1 2 3 31 31 H 1.08994 * 109.47324 * 59.99564 * 1 2 3 32 32 H 1.08995 * 109.46860 * 240.00648 * 2 1 3 33 33 H 1.08993 * 109.47434 * 119.99893 * 2 1 3 34 34 H 0.97004 * 119.99714 * 278.22901 * 8 6 4 35 35 H 1.09007 * 109.47270 * 298.89244 * 12 9 8 36 36 H 1.08996 * 109.47050 * 58.89574 * 12 9 8 37 37 H 0.97003 * 120.00416 * 185.02769 * 17 16 14 38 38 H 1.08998 * 117.49783 * 359.97438 * 22 13 12 39 39 H 1.09003 * 117.49800 * 145.02330 * 22 13 12 40 40 H 1.08999 * 117.49977 * 214.97847 * 23 13 12 41 41 H 1.09003 * 117.49734 * 359.97438 * 23 13 12 42 42 H 1.09003 * 109.46921 * 179.77746 * 26 24 6 43 43 H 1.09002 * 109.47185 * 299.77519 * 26 24 6 44 44 H 1.08996 * 109.46993 * 59.78054 * 26 24 6 45 45 H 1.09001 * 109.46847 * 304.99986 * 27 24 6 46 46 H 1.09004 * 109.47077 * 64.99971 * 27 24 6 47 47 H 1.08996 * 109.47293 * 179.97438 * 28 27 24 48 48 H 1.08992 * 109.47101 * 299.99991 * 28 27 24 49 49 H 1.09004 * 109.46856 * 60.00043 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0015 6 6 3.9206 2.9376 0.0000 7 1 3.5842 3.4702 -0.8895 8 7 5.3836 2.8610 -0.0014 9 16 6.2200 3.0238 -1.4212 10 8 7.5848 2.9327 -1.0364 11 8 5.6361 2.0578 -2.2846 12 6 5.8288 4.7023 -1.9871 13 6 6.5732 4.9865 -3.2932 14 6 6.2705 4.0467 -4.4317 15 1 6.9122 3.1978 -4.6163 16 6 5.1744 4.2705 -5.2376 17 7 4.4168 5.3269 -5.0389 18 14 4.7654 3.0730 -6.6117 19 1 3.8583 2.0171 -6.0945 20 1 4.0966 3.8009 -7.7199 21 1 6.0162 2.4489 -7.1131 22 6 7.9978 5.5349 -3.1895 23 6 6.8563 6.4494 -3.6411 24 6 3.4497 3.6837 1.2499 25 1 2.3607 3.6666 1.2947 26 6 3.9349 5.1336 1.1915 27 6 4.0220 3.0042 2.4955 28 6 3.4522 3.6725 3.7484 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8623 2.7149 0.8296 35 1 4.7552 4.7883 -2.1547 36 1 6.1371 5.4223 -1.2291 37 1 3.6055 5.4464 -5.5571 38 1 8.4045 5.6935 -2.1908 39 1 8.7160 5.2161 -3.9450 40 1 6.8240 6.7319 -4.6934 41 1 6.5118 7.2093 -2.9396 42 1 3.5960 5.6662 2.0801 43 1 5.0240 5.1509 1.1508 44 1 3.5303 5.6165 0.3021 45 1 3.7498 1.9487 2.4910 46 1 5.1078 3.0994 2.4949 47 1 3.8596 3.1881 4.6358 48 1 3.7244 4.7279 3.7529 49 1 2.3664 3.5773 3.7491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451287135.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:18 Heat of formation + Delta-G solvation = -149.817254 kcal Electronic energy + Delta-G solvation = -31140.316831 eV Core-core repulsion = 27002.291593 eV Total energy + Delta-G solvation = -4138.025238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.59176 -37.87632 -36.76386 -36.35943 -36.21608 -35.04804 -33.44264 -32.03250 -31.81061 -29.88351 -28.26906 -27.48024 -25.45844 -24.30694 -23.15796 -21.30771 -21.20069 -20.16849 -19.72822 -18.70398 -17.67706 -17.13274 -16.87816 -16.43416 -16.22635 -15.77694 -15.02534 -14.98830 -14.75076 -14.44611 -14.37029 -13.87576 -13.78245 -13.58536 -13.13786 -13.04059 -12.90216 -12.59446 -12.15135 -12.09262 -11.93797 -11.85596 -11.82797 -11.66688 -11.58001 -11.27451 -11.13055 -11.01210 -10.95009 -10.89473 -10.86601 -10.76988 -10.54200 -10.53128 -10.49241 -10.43660 -10.10127 -9.69969 -9.36754 -9.05348 -8.53053 -8.10625 -6.14287 -4.25535 0.98640 2.35051 2.65132 3.33280 3.37664 3.39100 3.44915 4.37689 4.39874 4.47463 4.50647 4.67648 4.83653 4.85693 4.93281 5.00251 5.03117 5.13902 5.19340 5.21170 5.29259 5.32108 5.39059 5.42524 5.49834 5.60550 5.67975 5.77507 5.81529 5.84192 5.85726 5.88181 5.91681 5.96473 6.17671 6.21348 6.25976 6.33648 6.50949 6.58500 6.70758 6.95996 7.10873 7.20384 7.43317 7.80212 7.90062 8.18307 8.80859 9.47229 10.93229 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.004725 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.362549 B = 5924.126931 C = 7298.474257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.449 3.551 5 O -0.485 6.485 6 C 0.172 3.828 7 H 0.126 0.874 8 N -1.108 6.108 9 S 2.602 3.398 10 O -0.970 6.970 11 O -0.935 6.935 12 C -0.555 4.555 13 C 0.040 3.960 14 C -0.514 4.514 15 H 0.068 0.932 16 C 0.084 3.916 17 N -0.876 5.876 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.270 1.270 22 C -0.210 4.210 23 C -0.133 4.133 24 C -0.091 4.091 25 H 0.097 0.903 26 C -0.154 4.154 27 C -0.126 4.126 28 C -0.150 4.150 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.414 0.586 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.854 -1.349 15.857 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.288 3.712 5 O -0.370 6.370 6 C 0.061 3.939 7 H 0.144 0.856 8 N -0.864 5.864 9 S 2.699 3.301 10 O -0.960 6.960 11 O -0.924 6.924 12 C -0.688 4.688 13 C 0.037 3.963 14 C -0.551 4.551 15 H 0.086 0.914 16 C -0.121 4.121 17 N -0.511 5.511 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.247 4.247 23 C -0.172 4.172 24 C -0.111 4.111 25 H 0.115 0.885 26 C -0.211 4.211 27 C -0.164 4.164 28 C -0.207 4.207 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.329 -2.233 15.201 17.023 hybrid contribution -0.508 -0.309 -0.317 0.674 sum -7.837 -2.542 14.884 17.012 Atomic orbital electron populations 1.21796 0.92725 1.02784 1.03521 1.23006 0.95225 0.80558 1.02622 1.86483 1.24580 1.32173 1.84333 1.24276 0.80681 0.93384 0.72835 1.90665 1.60309 1.42501 1.43535 1.20296 0.81366 0.89585 1.02658 0.85602 1.56066 1.12406 1.89525 1.28358 1.05444 0.73710 0.78614 0.72355 1.93511 1.33057 1.87667 1.81805 1.93578 1.77586 1.56797 1.64466 1.30002 1.11352 1.20102 1.07364 1.18275 0.91363 0.95980 0.90671 1.20543 1.12331 1.10211 1.11989 0.91400 1.24906 0.95902 0.94454 0.96808 1.69999 1.13760 1.25990 1.41386 0.86603 0.79206 0.81286 0.81261 1.19912 1.21198 1.19444 1.23200 0.92869 1.07895 1.00750 1.22512 1.00777 0.93203 1.00703 1.21464 1.01764 0.95785 0.92111 0.88500 1.21951 1.02221 0.94152 1.02789 1.21633 1.01034 0.99564 0.94164 1.21784 1.00959 1.00988 0.96975 0.90445 0.91604 0.91292 0.91055 0.91490 0.75115 0.85309 0.87852 0.92787 0.90876 0.89567 0.89295 0.91592 0.91580 0.91838 0.91522 0.92109 0.91248 0.92794 0.92108 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.01 10.03 -39.25 -0.39 -5.40 16 4 C 0.45 7.22 6.22 36.01 0.22 7.44 16 5 O -0.49 -9.29 16.18 -18.75 -0.30 -9.59 16 6 C 0.17 2.42 2.31 -69.08 -0.16 2.26 16 7 H 0.13 1.76 7.01 -51.93 -0.36 1.39 16 8 N -1.11 -17.23 4.24 -5.88 -0.02 -17.26 16 9 S 2.60 53.71 5.07 -107.50 -0.54 53.16 16 10 O -0.97 -21.83 18.08 -57.54 -1.04 -22.87 16 11 O -0.93 -23.29 17.02 -57.54 -0.98 -24.27 16 12 C -0.56 -11.10 5.78 37.16 0.21 -10.88 16 13 C 0.04 0.94 1.47 -155.66 -0.23 0.71 16 14 C -0.51 -13.97 7.57 -34.44 -0.26 -14.23 16 15 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 16 C 0.08 2.28 5.43 -17.82 -0.10 2.18 16 17 N -0.88 -23.61 12.72 55.43 0.71 -22.90 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.21 -4.55 9.94 -26.69 -0.27 -4.81 16 23 C -0.13 -2.96 9.26 -26.69 -0.25 -3.21 16 24 C -0.09 -0.93 2.18 -90.62 -0.20 -1.13 16 25 H 0.10 0.88 8.00 -51.93 -0.42 0.47 16 26 C -0.15 -1.43 8.83 37.16 0.33 -1.10 16 27 C -0.13 -1.20 4.88 -26.73 -0.13 -1.33 16 28 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 34 H 0.41 5.55 6.88 -34.47 -0.24 5.31 16 35 H 0.13 2.55 7.37 -51.92 -0.38 2.17 16 36 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 37 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 0.50 6.58 -51.93 -0.34 0.16 16 43 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.65 7.22 -51.93 -0.37 0.27 16 46 H 0.07 0.65 6.63 -51.93 -0.34 0.31 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 410.16 15.07 6.18 6.18 Total: -1.00 -34.60 410.16 -9.51 -44.11 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.24 Total: 6.99 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 0.15 Total: -24.83 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.68 Total: -40.16 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -2.72 Total: -62.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.54 Total: 53.16 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.60 -9.51 -44.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451287135.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.709 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds