Wall clock time and date at job start Wed Apr 1 2020 04:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46773 * 2 1 4 4 C 1.34227 * 116.99845 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00296 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99816 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47092 * 299.99907 * 6 4 3 8 8 N 1.46496 * 109.46916 * 180.02562 * 6 4 3 9 9 S 1.65596 * 120.00438 * 98.23178 * 8 6 4 10 10 O 1.42093 * 104.27861 * 178.49548 * 9 8 6 11 11 O 1.42106 * 104.27357 * 306.35284 * 9 8 6 12 12 C 1.81398 * 104.44971 * 62.42201 * 9 8 6 13 13 C 1.52999 * 109.47031 * 178.89506 * 12 9 8 14 14 C 1.50700 * 115.54997 * 58.70225 * 13 12 9 15 15 H 1.08004 * 119.99674 * 264.61283 * 14 13 12 16 16 C 1.37873 * 120.00251 * 84.62154 * 14 13 12 17 17 N 1.31514 * 120.00316 * 2.10733 * 16 14 13 18 18 Si 1.86803 * 120.00136 * 182.11594 * 16 14 13 19 19 H 1.48497 * 109.47318 * 89.99314 * 18 16 14 20 20 H 1.48502 * 109.46970 * 209.99688 * 18 16 14 21 21 H 1.48506 * 109.46764 * 329.99504 * 18 16 14 22 22 C 1.53000 * 117.49710 * 273.02932 * 13 12 9 23 23 C 1.53006 * 117.49884 * 204.36970 * 13 12 9 24 24 C 1.52998 * 109.47031 * 60.00247 * 6 4 3 25 25 H 1.08997 * 109.47481 * 304.81025 * 24 6 4 26 26 C 1.53002 * 109.47000 * 184.81288 * 24 6 4 27 27 C 1.52997 * 109.47326 * 64.81183 * 24 6 4 28 28 C 1.53001 * 109.47408 * 184.99792 * 27 24 6 29 29 H 1.09001 * 109.46460 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46860 * 299.99352 * 1 2 3 31 31 H 1.08994 * 109.47324 * 59.99564 * 1 2 3 32 32 H 1.08995 * 109.46860 * 240.00648 * 2 1 3 33 33 H 1.08993 * 109.47434 * 119.99893 * 2 1 3 34 34 H 0.97004 * 119.99714 * 278.22901 * 8 6 4 35 35 H 1.09007 * 109.47270 * 298.89244 * 12 9 8 36 36 H 1.08996 * 109.47050 * 58.89574 * 12 9 8 37 37 H 0.97003 * 120.00416 * 185.02769 * 17 16 14 38 38 H 1.08998 * 117.49783 * 359.97438 * 22 13 12 39 39 H 1.09003 * 117.49800 * 145.02330 * 22 13 12 40 40 H 1.08999 * 117.49977 * 214.97847 * 23 13 12 41 41 H 1.09003 * 117.49734 * 359.97438 * 23 13 12 42 42 H 1.09003 * 109.46921 * 179.77746 * 26 24 6 43 43 H 1.09002 * 109.47185 * 299.77519 * 26 24 6 44 44 H 1.08996 * 109.46993 * 59.78054 * 26 24 6 45 45 H 1.09001 * 109.46847 * 304.99986 * 27 24 6 46 46 H 1.09004 * 109.47077 * 64.99971 * 27 24 6 47 47 H 1.08996 * 109.47293 * 179.97438 * 28 27 24 48 48 H 1.08992 * 109.47101 * 299.99991 * 28 27 24 49 49 H 1.09004 * 109.46856 * 60.00043 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0015 6 6 3.9206 2.9376 0.0000 7 1 3.5842 3.4702 -0.8895 8 7 5.3836 2.8610 -0.0014 9 16 6.2200 3.0238 -1.4212 10 8 7.5848 2.9327 -1.0364 11 8 5.6361 2.0578 -2.2846 12 6 5.8288 4.7023 -1.9871 13 6 6.5732 4.9865 -3.2932 14 6 6.2705 4.0467 -4.4317 15 1 6.9122 3.1978 -4.6163 16 6 5.1744 4.2705 -5.2376 17 7 4.4168 5.3269 -5.0389 18 14 4.7654 3.0730 -6.6117 19 1 3.8583 2.0171 -6.0945 20 1 4.0966 3.8009 -7.7199 21 1 6.0162 2.4489 -7.1131 22 6 7.9978 5.5349 -3.1895 23 6 6.8563 6.4494 -3.6411 24 6 3.4497 3.6837 1.2499 25 1 2.3607 3.6666 1.2947 26 6 3.9349 5.1336 1.1915 27 6 4.0220 3.0042 2.4955 28 6 3.4522 3.6725 3.7484 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8623 2.7149 0.8296 35 1 4.7552 4.7883 -2.1547 36 1 6.1371 5.4223 -1.2291 37 1 3.6055 5.4464 -5.5571 38 1 8.4045 5.6935 -2.1908 39 1 8.7160 5.2161 -3.9450 40 1 6.8240 6.7319 -4.6934 41 1 6.5118 7.2093 -2.9396 42 1 3.5960 5.6662 2.0801 43 1 5.0240 5.1509 1.1508 44 1 3.5303 5.6165 0.3021 45 1 3.7498 1.9487 2.4910 46 1 5.1078 3.0994 2.4949 47 1 3.8596 3.1881 4.6358 48 1 3.7244 4.7279 3.7529 49 1 2.3664 3.5773 3.7491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451287135.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:17 Heat of formation + Delta-G solvation = -172.475110 kcal Electronic energy + Delta-G solvation = -31141.299350 eV Core-core repulsion = 27002.291593 eV Total energy + Delta-G solvation = -4139.007756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78677 -38.87933 -38.55005 -37.97158 -37.53249 -36.80386 -34.49936 -34.06578 -32.68966 -30.70418 -29.91091 -28.48999 -27.47184 -25.06936 -24.04625 -22.93841 -22.40073 -21.60970 -21.04401 -20.22112 -18.96162 -18.62185 -18.31225 -17.89513 -17.56076 -16.98400 -16.73565 -16.67506 -16.06142 -15.75996 -15.48482 -15.43128 -14.88393 -14.81307 -14.48075 -14.02304 -13.79426 -13.70528 -13.62349 -13.37050 -13.12782 -13.09343 -12.94183 -12.91595 -12.90149 -12.85871 -12.74405 -12.54761 -12.50236 -12.43002 -12.21827 -12.04185 -11.86204 -11.74908 -11.58637 -11.54148 -11.47754 -11.42854 -10.98279 -10.68551 -10.48115 -9.89151 -8.19906 -6.33424 -0.62284 1.10548 1.35017 1.39557 1.46718 1.52147 1.96647 2.39602 2.89432 3.08117 3.36897 3.40510 3.45747 3.59962 3.69917 3.89501 3.97591 4.05511 4.07220 4.15875 4.28708 4.31594 4.45357 4.55217 4.56645 4.62259 4.67543 4.69245 4.79461 4.84940 4.86424 4.91841 5.01226 5.11938 5.12781 5.19179 5.22222 5.23026 5.25143 5.41272 5.44184 5.49312 5.58478 5.66096 5.71777 5.94159 6.22602 6.67743 6.71866 7.39387 8.87009 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.004725 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.362549 B = 5924.126931 C = 7298.474257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.355 6.355 4 C 0.446 3.554 5 O -0.525 6.525 6 C 0.163 3.837 7 H 0.127 0.873 8 N -1.092 6.092 9 S 2.610 3.390 10 O -0.995 6.995 11 O -0.988 6.988 12 C -0.542 4.542 13 C 0.005 3.995 14 C -0.531 4.531 15 H 0.042 0.958 16 C 0.052 3.948 17 N -0.886 5.886 18 Si 0.922 3.078 19 H -0.281 1.281 20 H -0.269 1.269 21 H -0.275 1.275 22 C -0.201 4.201 23 C -0.124 4.124 24 C -0.081 4.081 25 H 0.112 0.888 26 C -0.157 4.157 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.425 0.575 35 H 0.131 0.869 36 H 0.147 0.853 37 H 0.266 0.734 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 0.288 17.842 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.287 3.713 5 O -0.414 6.414 6 C 0.053 3.947 7 H 0.145 0.855 8 N -0.852 5.852 9 S 2.708 3.292 10 O -0.985 6.985 11 O -0.977 6.977 12 C -0.676 4.676 13 C 0.003 3.997 14 C -0.568 4.568 15 H 0.060 0.940 16 C -0.152 4.152 17 N -0.522 5.522 18 Si 0.749 3.251 19 H -0.208 1.208 20 H -0.194 1.194 21 H -0.199 1.199 22 C -0.238 4.238 23 C -0.163 4.163 24 C -0.101 4.101 25 H 0.130 0.870 26 C -0.214 4.214 27 C -0.166 4.166 28 C -0.203 4.203 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.263 0.737 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.588 -0.595 17.187 19.222 hybrid contribution -0.136 -0.868 -0.914 1.267 sum -8.724 -1.462 16.273 18.522 Atomic orbital electron populations 1.21813 0.89761 1.04422 1.03978 1.23314 0.97537 0.79481 1.02134 1.86485 1.23425 1.33516 1.83705 1.24742 0.81123 0.93766 0.71673 1.90645 1.61238 1.43858 1.45610 1.20683 0.80055 0.89016 1.04944 0.85527 1.55497 1.13236 1.89279 1.27157 1.04883 0.73126 0.78623 0.72553 1.93463 1.34686 1.88092 1.82258 1.93516 1.78350 1.59126 1.66749 1.29808 1.11053 1.20058 1.06700 1.18400 0.93572 0.96364 0.91381 1.20666 1.12190 1.10267 1.13708 0.94021 1.25327 0.96110 0.95574 0.98145 1.70004 1.13952 1.26269 1.41970 0.86100 0.78682 0.80088 0.80275 1.20753 1.19424 1.19947 1.23271 0.91960 1.06591 1.02009 1.22460 1.00817 0.92926 1.00144 1.21501 1.02562 0.95959 0.90093 0.87005 1.22020 1.02249 0.93221 1.03945 1.21654 1.01166 0.98840 0.94918 1.21759 1.01250 1.01412 0.95833 0.88227 0.90229 0.91670 0.92875 0.90806 0.73749 0.85067 0.83505 0.92461 0.88052 0.90404 0.91564 0.88827 0.89292 0.91906 0.91587 0.93686 0.91262 0.92434 0.90961 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.15 6.19 71.98 0.45 1.59 16 3 O -0.36 -9.80 10.03 -51.39 -0.52 -10.31 16 4 C 0.45 14.42 6.22 71.24 0.44 14.86 16 5 O -0.53 -20.73 16.18 21.97 0.36 -20.38 16 6 C 0.16 4.46 2.31 44.25 0.10 4.56 16 7 H 0.13 3.45 7.01 -2.39 -0.02 3.43 16 8 N -1.09 -33.27 4.24 -172.52 -0.73 -34.00 16 9 S 2.61 107.65 5.07 -56.49 -0.29 107.36 16 10 O -0.99 -44.63 18.08 -127.65 -2.31 -46.94 16 11 O -0.99 -50.83 17.02 -127.65 -2.17 -53.00 16 12 C -0.54 -20.77 5.78 71.98 0.42 -20.35 16 13 C 0.01 0.24 1.47 -52.93 -0.08 0.16 16 14 C -0.53 -29.32 7.57 25.60 0.19 -29.13 16 15 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 16 C 0.05 2.82 5.43 84.65 0.46 3.28 16 17 N -0.89 -47.36 12.72 21.45 0.27 -47.08 16 18 Si 0.92 44.81 29.54 68.60 2.03 46.84 16 19 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 22 C -0.20 -8.40 9.94 30.62 0.30 -8.09 16 23 C -0.12 -5.33 9.26 30.62 0.28 -5.04 16 24 C -0.08 -1.47 2.18 -10.79 -0.02 -1.49 16 25 H 0.11 1.73 8.00 -2.39 -0.02 1.71 16 26 C -0.16 -2.39 8.83 71.98 0.64 -1.75 16 27 C -0.13 -2.19 4.88 30.59 0.15 -2.04 16 28 C -0.15 -1.78 9.67 71.98 0.70 -1.09 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 34 H 0.42 11.04 6.88 -96.74 -0.67 10.37 16 35 H 0.13 4.99 7.37 -2.39 -0.02 4.97 16 36 H 0.15 4.25 8.11 -2.39 -0.02 4.23 16 37 H 0.27 13.53 8.32 -92.71 -0.77 12.76 16 38 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.09 0.97 6.58 -2.39 -0.02 0.95 16 43 H 0.06 0.97 7.75 -2.39 -0.02 0.95 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.04 0.91 7.22 -2.39 -0.02 0.89 16 46 H 0.07 1.17 6.63 -2.38 -0.02 1.15 16 47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.73 6.57 -2.39 -0.02 0.72 16 49 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -76.18 410.16 1.68 -74.50 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.27 Total: 28.99 kcal Atomic # 6 Polarization: -50.74 SS G_CDS: 4.77 Total: -45.97 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -0.46 Total: -81.09 kcal Atomic # 8 Polarization: -125.99 SS G_CDS: -4.64 Total: -130.63 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 107.65 SS G_CDS: -0.29 Total: 107.36 kcal Total: -76.18 1.68 -74.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451287135.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.979 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds