Wall clock time and date at job start Wed Apr 1 2020 04:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47075 * 2 1 4 4 N 1.46500 * 109.46560 * 177.00886 * 3 2 1 5 5 C 1.46492 * 120.00345 * 78.56974 * 4 3 2 6 6 H 1.09004 * 109.47397 * 186.90134 * 5 4 3 7 7 C 1.52993 * 109.47218 * 306.90028 * 5 4 3 8 8 C 1.50703 * 109.47343 * 66.89724 * 5 4 3 9 9 O 1.20832 * 119.99682 * 0.02562 * 8 5 4 10 10 O 1.34232 * 120.00262 * 179.97438 * 8 5 4 11 11 C 1.45202 * 116.99899 * 180.02562 * 10 8 5 12 12 C 1.52994 * 109.47036 * 180.02562 * 11 10 8 13 13 S 1.65604 * 119.99801 * 258.28729 * 4 3 2 14 14 O 1.42101 * 104.27429 * 26.35168 * 13 4 3 15 15 O 1.42103 * 104.27734 * 154.20816 * 13 4 3 16 16 C 1.81400 * 104.45315 * 270.28122 * 13 4 3 17 17 C 1.52998 * 109.47198 * 172.61564 * 16 13 4 18 18 C 1.50708 * 115.54863 * 62.90900 * 17 16 13 19 19 H 1.07997 * 119.99682 * 264.46813 * 18 17 16 20 20 C 1.37870 * 119.99718 * 84.47621 * 18 17 16 21 21 N 1.31515 * 120.00495 * 1.89559 * 20 18 17 22 22 Si 1.86803 * 119.99687 * 181.90047 * 20 18 17 23 23 H 1.48490 * 109.47525 * 59.99392 * 22 20 18 24 24 H 1.48504 * 109.47158 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46962 * 299.99465 * 22 20 18 26 26 C 1.52994 * 117.49823 * 277.23947 * 17 16 13 27 27 C 1.52999 * 117.49872 * 208.57567 * 17 16 13 28 28 H 1.09005 * 109.47054 * 299.99824 * 1 2 3 29 29 H 1.08995 * 109.47386 * 59.99844 * 1 2 3 30 30 H 1.09001 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46537 * 240.00074 * 2 1 3 32 32 H 1.09005 * 109.46793 * 120.00634 * 2 1 3 33 33 H 1.09000 * 109.46846 * 57.01077 * 3 2 1 34 34 H 1.09002 * 109.47202 * 297.00571 * 3 2 1 35 35 H 1.09006 * 109.47589 * 183.96631 * 7 5 4 36 36 H 1.09007 * 109.47177 * 303.96360 * 7 5 4 37 37 H 1.09004 * 109.47644 * 63.96179 * 7 5 4 38 38 H 1.09002 * 109.47089 * 300.00425 * 11 10 8 39 39 H 1.08997 * 109.46928 * 60.00505 * 11 10 8 40 40 H 1.09005 * 109.47473 * 300.00523 * 12 11 10 41 41 H 1.09005 * 109.47141 * 59.99969 * 12 11 10 42 42 H 1.09002 * 109.47515 * 180.02562 * 12 11 10 43 43 H 1.08996 * 109.47140 * 292.61601 * 16 13 4 44 44 H 1.09000 * 109.47024 * 52.61501 * 16 13 4 45 45 H 0.97007 * 120.00102 * 185.02701 * 21 20 18 46 46 H 1.08994 * 117.50399 * 0.02562 * 26 17 16 47 47 H 1.09007 * 117.50189 * 145.02283 * 26 17 16 48 48 H 1.09000 * 117.49962 * 214.97616 * 27 17 16 49 49 H 1.09001 * 117.49563 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4430 0.0721 5 6 4.2959 1.1702 -1.1293 6 1 5.3492 1.0920 -0.8597 7 6 3.8318 -0.1447 -1.7589 8 6 4.1124 2.2928 -2.1179 9 8 3.3935 3.2253 -1.8464 10 8 4.7483 2.2573 -3.2995 11 6 4.5252 3.3727 -4.2019 12 6 5.3262 3.1567 -5.4874 13 16 4.2613 1.7588 1.5102 14 8 3.3181 1.3647 2.4973 15 8 5.5177 1.1051 1.3950 16 6 4.4793 3.5596 1.5212 17 6 5.0076 4.0010 2.8875 18 6 6.3648 3.4646 3.2638 19 1 6.4444 2.5758 3.8720 20 6 7.5046 4.1087 2.8317 21 7 7.4078 5.2120 2.1225 22 14 9.1867 3.4141 3.2534 23 1 9.3125 2.0458 2.6907 24 1 10.2412 4.2862 2.6766 25 1 9.3435 3.3588 4.7292 26 6 3.9872 4.1925 4.0112 27 6 4.6488 5.4107 3.3619 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5140 0.8900 33 1 1.6336 1.9715 0.8620 34 1 1.7212 1.9406 -0.9156 35 1 4.4673 -0.3835 -2.6117 36 1 3.8984 -0.9443 -1.0210 37 1 2.7990 -0.0432 -2.0925 38 1 3.4641 3.4390 -4.4422 39 1 4.8479 4.2973 -3.7234 40 1 6.3874 3.0900 -5.2475 41 1 5.0031 2.2321 -5.9658 42 1 5.1591 3.9942 -6.1647 43 1 5.1918 3.8440 0.7469 44 1 3.5213 4.0427 1.3286 45 1 8.2057 5.6252 1.7568 46 1 2.9396 4.0036 3.7774 47 1 4.2976 3.9309 5.0229 48 1 5.3941 5.9499 3.9466 49 1 4.0367 6.0237 2.7003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451474269.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:42 Heat of formation + Delta-G solvation = -154.136171 kcal Electronic energy + Delta-G solvation = -31224.478885 eV Core-core repulsion = 27086.266365 eV Total energy + Delta-G solvation = -4138.212520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73997 -38.83918 -38.60791 -38.14569 -37.37106 -36.85143 -34.27178 -34.12158 -32.71772 -31.49679 -29.93506 -27.57367 -27.23881 -25.71210 -23.73118 -23.02975 -22.46381 -22.06331 -21.38336 -19.98846 -19.19213 -18.48150 -18.37956 -17.83548 -17.51203 -17.07266 -16.74721 -16.65182 -16.10926 -15.68202 -15.28925 -15.24135 -14.96789 -14.70503 -14.41385 -14.14804 -13.86006 -13.76276 -13.60440 -13.51138 -13.33269 -13.15807 -13.11643 -12.99986 -12.93778 -12.84761 -12.78975 -12.65456 -12.47272 -12.45833 -12.44373 -12.29015 -12.04311 -11.93530 -11.64316 -11.53033 -11.45259 -11.18309 -11.02921 -10.54809 -10.31919 -9.86758 -8.22418 -6.40054 -0.68664 1.06020 1.37243 1.40048 1.40425 1.48054 1.87550 2.37637 2.86702 3.02913 3.19823 3.34795 3.37369 3.70834 3.87033 3.94260 3.99264 4.01700 4.08988 4.14162 4.18959 4.25653 4.35090 4.44138 4.47004 4.54900 4.68444 4.74077 4.75286 4.78652 4.82771 4.92743 4.93996 4.96393 5.02586 5.11657 5.15018 5.15588 5.23698 5.34570 5.37753 5.41842 5.46702 5.55911 5.56084 5.65927 6.16963 6.64422 6.67643 7.33731 8.84715 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.004947 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.850410 B = 5658.850743 C = 7201.700225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 C 0.116 3.884 4 N -0.981 5.981 5 C 0.146 3.854 6 H 0.130 0.870 7 C -0.150 4.150 8 C 0.451 3.549 9 O -0.518 6.518 10 O -0.354 6.354 11 C 0.051 3.949 12 C -0.145 4.145 13 S 2.621 3.379 14 O -0.974 6.974 15 O -0.979 6.979 16 C -0.551 4.551 17 C 0.007 3.993 18 C -0.535 4.535 19 H 0.052 0.948 20 C 0.041 3.959 21 N -0.895 5.895 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.266 1.266 26 C -0.192 4.192 27 C -0.135 4.135 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.265 0.735 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.397 -7.943 -15.524 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C -0.008 4.008 4 N -0.817 5.817 5 C 0.038 3.962 6 H 0.148 0.852 7 C -0.208 4.208 8 C 0.292 3.708 9 O -0.407 6.407 10 O -0.270 6.270 11 C -0.023 4.023 12 C -0.202 4.202 13 S 2.719 3.281 14 O -0.964 6.964 15 O -0.969 6.969 16 C -0.683 4.683 17 C 0.005 3.995 18 C -0.572 4.572 19 H 0.070 0.930 20 C -0.162 4.162 21 N -0.531 5.531 22 Si 0.759 3.241 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.190 1.190 26 C -0.229 4.229 27 C -0.174 4.174 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.139 0.861 45 H 0.074 0.926 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.256 -8.121 -14.894 19.823 hybrid contribution 1.032 1.133 0.131 1.538 sum -9.223 -6.988 -14.762 18.757 Atomic orbital electron populations 1.21704 0.93858 1.02760 1.02217 1.22367 0.97439 0.95857 1.03723 1.21578 0.76513 0.98882 1.03864 1.57683 1.15437 1.85121 1.23475 1.20664 0.98830 0.93377 0.83343 0.85217 1.22343 1.03645 0.92528 1.02314 1.24510 0.76676 0.87492 0.82129 1.90640 1.37186 1.35581 1.77252 1.86503 1.65598 1.48063 1.26884 1.23324 1.01966 0.86989 0.89989 1.21821 1.00244 1.04428 0.93711 1.04662 0.72794 0.77851 0.72797 1.93475 1.62928 1.81818 1.58181 1.93477 1.44570 1.73396 1.85447 1.29920 1.08009 1.24069 1.06341 1.18445 0.93741 0.99427 0.87883 1.20696 0.90056 1.11660 1.34780 0.92963 1.25583 1.02129 0.94098 0.94384 1.70076 1.30360 1.18184 1.34503 0.85963 0.79877 0.78951 0.79322 1.19693 1.19763 1.19025 1.23222 0.97263 1.04202 0.98187 1.22441 1.01271 0.90815 1.02905 0.93131 0.91554 0.91150 0.88449 0.92781 0.90388 0.89255 0.88044 0.89566 0.89401 0.90468 0.92448 0.91790 0.90409 0.88276 0.87407 0.86082 0.92570 0.88510 0.89565 0.91267 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 71.98 0.71 -1.82 16 2 C -0.16 -3.34 5.62 30.59 0.17 -3.17 16 3 C 0.12 3.07 4.68 86.38 0.40 3.47 16 4 N -0.98 -31.10 2.41 -497.31 -1.20 -32.30 16 5 C 0.15 4.06 3.15 44.25 0.14 4.20 16 6 H 0.13 3.92 6.77 -2.39 -0.02 3.91 16 7 C -0.15 -2.77 7.57 71.98 0.55 -2.23 16 8 C 0.45 12.87 7.09 71.24 0.50 13.38 16 9 O -0.52 -17.09 14.65 21.95 0.32 -16.76 16 10 O -0.35 -8.72 10.15 -51.43 -0.52 -9.24 16 11 C 0.05 1.03 6.19 71.98 0.45 1.47 16 12 C -0.15 -1.96 10.29 71.98 0.74 -1.21 16 13 S 2.62 109.99 5.05 -56.49 -0.29 109.70 16 14 O -0.97 -42.79 16.86 -127.65 -2.15 -44.94 16 15 O -0.98 -46.80 16.16 -127.65 -2.06 -48.86 16 16 C -0.55 -24.93 6.04 71.98 0.43 -24.49 16 17 C 0.01 0.37 1.41 -52.93 -0.07 0.29 16 18 C -0.53 -30.35 8.10 25.60 0.21 -30.14 16 19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 20 C 0.04 2.29 5.43 84.65 0.46 2.75 16 21 N -0.90 -51.03 12.73 21.44 0.27 -50.76 16 22 Si 0.93 44.51 29.54 68.60 2.03 46.54 16 23 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 C -0.19 -8.61 9.96 30.62 0.30 -8.30 16 27 C -0.14 -6.45 9.25 30.62 0.28 -6.17 16 28 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.67 4.41 -2.38 -0.01 1.66 16 32 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.08 2.18 7.38 -2.39 -0.02 2.16 16 34 H 0.09 2.17 6.67 -2.39 -0.02 2.15 16 35 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.09 1.55 7.81 -2.38 -0.02 1.53 16 37 H 0.09 1.34 5.94 -2.39 -0.01 1.33 16 38 H 0.08 1.42 8.13 -2.39 -0.02 1.40 16 39 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.11 5.24 8.14 -2.39 -0.02 5.22 16 44 H 0.12 4.81 8.11 -2.39 -0.02 4.79 16 45 H 0.27 14.35 8.32 -92.70 -0.77 13.58 16 46 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 47 H 0.09 3.82 8.14 -2.38 -0.02 3.80 16 48 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 49 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -71.67 408.89 2.60 -69.06 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.92 Total: 29.53 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 5.28 Total: -51.97 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -0.93 Total: -83.06 kcal Atomic # 8 Polarization: -115.39 SS G_CDS: -4.42 Total: -119.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 109.99 SS G_CDS: -0.29 Total: 109.70 kcal Total: -71.67 2.60 -69.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451474269.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.072 kcal (2) G-P(sol) polarization free energy of solvation -71.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds