Wall clock time and date at job start Wed Apr 1 2020 04:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 N 1.46494 * 109.47126 * 119.99987 * 2 1 3 5 5 C 1.34774 * 120.00320 * 155.00555 * 4 2 1 6 6 O 1.21513 * 119.99744 * 359.97438 * 5 4 2 7 7 O 1.34638 * 120.00737 * 180.02562 * 5 4 2 8 8 C 1.45193 * 117.00270 * 179.97438 * 7 5 4 9 9 C 1.53501 * 114.20547 * 209.99450 * 8 7 5 10 10 N 1.47065 * 87.98729 * 220.14768 * 9 8 7 11 11 C 1.34775 * 136.05849 * 207.08629 * 10 9 8 12 12 O 1.21586 * 120.00016 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99877 * 180.02562 * 11 10 9 14 14 C 1.39960 * 119.99968 * 185.14503 * 13 11 10 15 15 C 1.39282 * 119.94501 * 213.03830 * 14 13 11 16 16 C 1.38495 * 120.42603 * 179.74469 * 15 14 13 17 17 C 1.37678 * 120.32319 * 0.25095 * 16 15 14 18 18 C 1.40744 * 119.88095 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.21024 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00675 * 209.19286 * 19 18 17 21 21 C 1.39938 * 119.99798 * 29.19038 * 19 18 17 22 22 N 1.30837 * 119.99899 * 15.62875 * 21 19 18 23 23 Si 1.86791 * 120.00173 * 195.62436 * 21 19 18 24 24 H 1.48502 * 109.47057 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47386 * 119.99992 * 23 21 19 26 26 H 1.48498 * 109.47566 * 240.00449 * 23 21 19 27 27 C 1.38234 * 119.94472 * 33.28946 * 14 13 11 28 28 C 1.47069 * 87.88177 * 27.34515 * 10 9 8 29 29 H 1.09004 * 109.47393 * 299.99746 * 1 2 3 30 30 H 1.08994 * 109.47372 * 60.00392 * 1 2 3 31 31 H 1.09005 * 109.46696 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47260 * 239.99862 * 2 1 3 33 33 H 1.09003 * 109.47541 * 299.99967 * 3 2 1 34 34 H 1.08997 * 109.47238 * 59.99848 * 3 2 1 35 35 H 1.09004 * 109.47433 * 179.97438 * 3 2 1 36 36 H 0.97001 * 120.00296 * 334.99894 * 4 2 1 37 37 H 1.08998 * 113.28715 * 343.06761 * 8 7 5 38 38 H 1.09000 * 113.46621 * 105.37089 * 9 8 7 39 39 H 1.09000 * 113.52303 * 334.94314 * 9 8 7 40 40 H 0.97003 * 120.00169 * 5.14713 * 13 11 10 41 41 H 1.08002 * 119.78977 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.83537 * 180.27468 * 16 15 14 43 43 H 1.07995 * 120.06055 * 179.97438 * 17 16 15 44 44 H 0.96998 * 120.00100 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.16084 * 359.97438 * 27 14 13 46 46 H 1.09004 * 113.46920 * 87.43952 * 28 10 9 47 47 H 1.09006 * 113.46488 * 217.87374 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2590 1.1944 6 8 3.9368 -1.1992 0.2006 7 8 3.6890 -1.8942 2.2935 8 6 5.0139 -2.4834 2.2197 9 6 5.1989 -3.7285 3.0982 10 7 6.5399 -3.2278 3.4353 11 6 7.7142 -3.7739 3.8086 12 8 7.8120 -4.9795 3.9322 13 7 8.7798 -2.9835 4.0459 14 6 10.0258 -3.5549 4.3281 15 6 10.9040 -2.9130 5.1982 16 6 12.1373 -3.4721 5.4886 17 6 12.5111 -4.6670 4.9158 18 6 11.6365 -5.3240 4.0302 19 6 12.0135 -6.5513 3.4376 20 1 11.6286 -6.8225 2.4656 21 6 12.8855 -7.4145 4.1105 22 7 13.1114 -7.2504 5.3887 23 14 13.7267 -8.8012 3.1839 24 1 13.3068 -8.7711 1.7598 25 1 15.1995 -8.6314 3.2689 26 1 13.3430 -10.1033 3.7861 27 6 10.3851 -4.7526 3.7389 28 6 6.0339 -1.8685 3.1922 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4426 0.0005 36 1 1.4622 -0.7387 1.9894 37 1 5.3781 -2.5985 1.1989 38 1 5.2129 -4.6603 2.5328 39 1 4.5214 -3.7636 3.9513 40 1 8.6830 -2.0186 4.0211 41 1 10.6194 -1.9756 5.6528 42 1 12.8090 -2.9685 6.1680 43 1 13.4740 -5.0989 5.1449 44 1 13.7161 -7.8485 5.8551 45 1 9.7064 -5.2491 3.0614 46 1 5.5763 -1.4122 4.0700 47 1 6.7595 -1.2156 2.7070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496849652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:28 Heat of formation + Delta-G solvation = -40.652884 kcal Electronic energy + Delta-G solvation = -29154.339180 eV Core-core repulsion = 24917.896464 eV Total energy + Delta-G solvation = -4236.442716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.17494 -40.21634 -38.73893 -37.34463 -36.68940 -35.79239 -34.37056 -32.97784 -31.98565 -29.77168 -29.66574 -27.76475 -27.45298 -26.27415 -25.23070 -23.77741 -22.08195 -21.20918 -20.99063 -20.70028 -19.51370 -19.11553 -18.05975 -17.52784 -17.22410 -16.62415 -16.16002 -15.68776 -15.39429 -15.01119 -14.88935 -14.68291 -14.50156 -13.99909 -13.88084 -13.82959 -13.31765 -13.07356 -12.99200 -12.87577 -12.82280 -12.72908 -12.27986 -12.09316 -11.98042 -11.87679 -11.63183 -11.51238 -11.32778 -11.06810 -10.97629 -10.61135 -10.54084 -10.47189 -10.16593 -9.71362 -9.70368 -9.60172 -9.18915 -8.89094 -8.76107 -7.36963 -6.83789 -6.65395 -4.28124 1.62261 2.43837 2.56237 2.77805 2.94297 3.14403 3.20746 3.23739 3.58915 3.81902 3.87718 4.02439 4.11264 4.28139 4.49124 4.59051 4.69238 4.71845 4.82595 5.03251 5.09562 5.13235 5.16954 5.24448 5.30619 5.36942 5.42915 5.52648 5.59755 5.74484 5.74865 5.93374 6.16192 6.25749 6.42127 6.79261 6.89149 6.96815 7.07787 7.13790 7.29057 7.40900 7.70813 7.83429 7.94895 8.00860 8.14688 8.28465 8.38990 8.70676 8.91406 9.01676 9.04590 10.31202 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.001754 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.469734 B =15958.192645 C =16568.008139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.706 5.706 5 C 0.648 3.352 6 O -0.567 6.567 7 O -0.353 6.353 8 C 0.069 3.931 9 C 0.131 3.869 10 N -0.664 5.664 11 C 0.736 3.264 12 O -0.551 6.551 13 N -0.675 5.675 14 C 0.167 3.833 15 C -0.260 4.260 16 C -0.091 4.091 17 C -0.169 4.169 18 C 0.122 3.878 19 C -0.461 4.461 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.208 4.208 28 C 0.088 3.912 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.406 0.594 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.394 0.606 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.279 0.721 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.181 15.828 -6.762 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 C -0.226 4.226 4 N -0.366 5.366 5 C 0.400 3.600 6 O -0.455 6.455 7 O -0.266 6.266 8 C 0.012 3.988 9 C 0.007 3.993 10 N -0.407 5.407 11 C 0.439 3.561 12 O -0.425 6.425 13 N -0.321 5.321 14 C 0.075 3.925 15 C -0.282 4.282 16 C -0.110 4.110 17 C -0.188 4.188 18 C 0.119 3.881 19 C -0.491 4.491 20 H 0.096 0.904 21 C -0.141 4.141 22 N -0.424 5.424 23 Si 0.733 3.267 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.229 4.229 28 C -0.036 4.036 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.228 0.772 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.110 0.890 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.368 14.681 -6.899 27.631 hybrid contribution 0.038 -0.059 0.234 0.244 sum -22.330 14.622 -6.665 27.511 Atomic orbital electron populations 1.22100 0.93466 1.03043 1.03322 1.20992 0.94062 0.92835 0.87166 1.22242 1.02473 0.95470 1.02414 1.44836 1.15409 1.58166 1.18200 1.18164 0.82626 0.77388 0.81790 1.91019 1.56975 1.63708 1.33789 1.86282 1.35241 1.66774 1.38269 1.24761 0.78466 0.94144 1.01469 1.22918 0.81984 0.96962 0.97426 1.48174 1.09119 1.09161 1.74290 1.15102 0.78114 0.84995 0.77853 1.91031 1.81989 1.12141 1.57330 1.42500 1.07496 1.08663 1.73391 1.17256 0.82331 0.95404 0.97508 1.19992 0.97865 1.02996 1.07334 1.20432 0.95143 0.96235 0.99210 1.21248 1.00451 0.94527 1.02624 1.17493 0.88950 0.91758 0.89871 1.19552 1.23723 1.01618 1.04186 0.90440 1.25869 0.95018 0.98759 0.94460 1.69840 1.28831 1.35374 1.08309 0.86270 0.79294 0.80253 0.80926 1.18453 1.19804 1.20067 1.21022 0.97169 0.97767 1.06985 1.23420 0.94792 0.87239 0.98119 0.91760 0.90395 0.91661 0.88946 0.91194 0.92243 0.91794 0.75868 0.84961 0.89057 0.88931 0.77224 0.89301 0.88962 0.86788 0.91072 0.87349 0.88959 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 9.38 37.16 0.35 -0.09 16 2 C 0.15 0.81 3.18 -67.94 -0.22 0.60 16 3 C -0.17 -0.87 9.48 37.16 0.35 -0.51 16 4 N -0.71 -4.47 5.08 -58.74 -0.30 -4.76 16 5 C 0.65 6.36 8.71 54.05 0.47 6.83 16 6 O -0.57 -7.42 15.21 -19.28 -0.29 -7.71 16 7 O -0.35 -3.27 10.33 -40.32 -0.42 -3.68 16 8 C 0.07 0.69 4.64 -26.08 -0.12 0.57 16 9 C 0.13 1.48 8.46 -8.51 -0.07 1.41 16 10 N -0.66 -9.49 3.69 -190.88 -0.70 -10.19 16 11 C 0.74 14.46 8.53 -86.92 -0.74 13.72 16 12 O -0.55 -13.57 14.79 5.29 0.08 -13.49 16 13 N -0.67 -12.86 5.35 -14.27 -0.08 -12.93 16 14 C 0.17 3.92 6.28 -83.76 -0.53 3.40 16 15 C -0.26 -5.86 9.97 -39.10 -0.39 -6.25 16 16 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 17 C -0.17 -4.51 8.66 -38.84 -0.34 -4.84 16 18 C 0.12 3.45 5.52 -106.85 -0.59 2.86 16 19 C -0.46 -12.98 9.04 -37.74 -0.34 -13.32 16 20 H 0.08 2.13 7.89 -52.49 -0.41 1.72 16 21 C 0.08 2.00 5.15 -17.34 -0.09 1.92 16 22 N -0.80 -21.62 11.15 55.55 0.62 -21.00 16 23 Si 0.91 19.63 29.59 -169.99 -5.03 14.60 16 24 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 C -0.21 -5.57 8.39 -38.69 -0.32 -5.90 16 28 C 0.09 0.88 8.16 -8.38 -0.07 0.82 16 29 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.65 7.58 -51.93 -0.39 0.26 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.41 1.61 8.71 -40.82 -0.36 1.25 16 37 H 0.13 1.49 7.06 -51.93 -0.37 1.12 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.39 5.93 8.54 -40.82 -0.35 5.58 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.11 3.11 6.43 -52.49 -0.34 2.77 16 44 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 45 H 0.11 3.03 6.39 -52.49 -0.34 2.69 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -35.17 398.52 -9.92 -45.08 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.76 Total: 9.45 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.04 Total: -1.37 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.46 Total: -48.89 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.63 Total: -24.89 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.17 -9.92 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496849652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.432 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds