Wall clock time and date at job start Wed Apr 1 2020 04:53:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.46979 * 2 1
4 4 N 1.46494 * 109.47126 * 119.99987 * 2 1 3
5 5 C 1.34774 * 120.00320 * 155.00555 * 4 2 1
6 6 O 1.21513 * 119.99744 * 359.97438 * 5 4 2
7 7 O 1.34638 * 120.00737 * 180.02562 * 5 4 2
8 8 C 1.45193 * 117.00270 * 179.97438 * 7 5 4
9 9 C 1.53501 * 114.20547 * 209.99450 * 8 7 5
10 10 N 1.47065 * 87.98729 * 220.14768 * 9 8 7
11 11 C 1.34775 * 136.05849 * 207.08629 * 10 9 8
12 12 O 1.21586 * 120.00016 * 359.97438 * 11 10 9
13 13 N 1.34777 * 119.99877 * 180.02562 * 11 10 9
14 14 C 1.39960 * 119.99968 * 185.14503 * 13 11 10
15 15 C 1.39282 * 119.94501 * 213.03830 * 14 13 11
16 16 C 1.38495 * 120.42603 * 179.74469 * 15 14 13
17 17 C 1.37678 * 120.32319 * 0.25095 * 16 15 14
18 18 C 1.40744 * 119.88095 * 0.02562 * 17 16 15
19 19 C 1.41408 * 120.21024 * 179.97438 * 18 17 16
20 20 H 1.07997 * 120.00675 * 209.19286 * 19 18 17
21 21 C 1.39938 * 119.99798 * 29.19038 * 19 18 17
22 22 N 1.30837 * 119.99899 * 15.62875 * 21 19 18
23 23 Si 1.86791 * 120.00173 * 195.62436 * 21 19 18
24 24 H 1.48502 * 109.47057 * 0.02562 * 23 21 19
25 25 H 1.48501 * 109.47386 * 119.99992 * 23 21 19
26 26 H 1.48498 * 109.47566 * 240.00449 * 23 21 19
27 27 C 1.38234 * 119.94472 * 33.28946 * 14 13 11
28 28 C 1.47069 * 87.88177 * 27.34515 * 10 9 8
29 29 H 1.09004 * 109.47393 * 299.99746 * 1 2 3
30 30 H 1.08994 * 109.47372 * 60.00392 * 1 2 3
31 31 H 1.09005 * 109.46696 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.47260 * 239.99862 * 2 1 3
33 33 H 1.09003 * 109.47541 * 299.99967 * 3 2 1
34 34 H 1.08997 * 109.47238 * 59.99848 * 3 2 1
35 35 H 1.09004 * 109.47433 * 179.97438 * 3 2 1
36 36 H 0.97001 * 120.00296 * 334.99894 * 4 2 1
37 37 H 1.08998 * 113.28715 * 343.06761 * 8 7 5
38 38 H 1.09000 * 113.46621 * 105.37089 * 9 8 7
39 39 H 1.09000 * 113.52303 * 334.94314 * 9 8 7
40 40 H 0.97003 * 120.00169 * 5.14713 * 13 11 10
41 41 H 1.08002 * 119.78977 * 0.02562 * 15 14 13
42 42 H 1.08000 * 119.83537 * 180.27468 * 16 15 14
43 43 H 1.07995 * 120.06055 * 179.97438 * 17 16 15
44 44 H 0.96998 * 120.00100 * 180.02562 * 22 21 19
45 45 H 1.07999 * 120.16084 * 359.97438 * 27 14 13
46 46 H 1.09004 * 113.46920 * 87.43952 * 28 10 9
47 47 H 1.09006 * 113.46488 * 217.87374 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 3.2403 -1.2590 1.1944
6 8 3.9368 -1.1992 0.2006
7 8 3.6890 -1.8942 2.2935
8 6 5.0139 -2.4834 2.2197
9 6 5.1989 -3.7285 3.0982
10 7 6.5399 -3.2278 3.4353
11 6 7.7142 -3.7739 3.8086
12 8 7.8120 -4.9795 3.9322
13 7 8.7798 -2.9835 4.0459
14 6 10.0258 -3.5549 4.3281
15 6 10.9040 -2.9130 5.1982
16 6 12.1373 -3.4721 5.4886
17 6 12.5111 -4.6670 4.9158
18 6 11.6365 -5.3240 4.0302
19 6 12.0135 -6.5513 3.4376
20 1 11.6286 -6.8225 2.4656
21 6 12.8855 -7.4145 4.1105
22 7 13.1114 -7.2504 5.3887
23 14 13.7267 -8.8012 3.1839
24 1 13.3068 -8.7711 1.7598
25 1 15.1995 -8.6314 3.2689
26 1 13.3430 -10.1033 3.7861
27 6 10.3851 -4.7526 3.7389
28 6 6.0339 -1.8685 3.1922
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8899
33 1 1.6766 1.9564 -0.8900
34 1 1.6766 1.9563 0.8899
35 1 3.1300 1.4426 0.0005
36 1 1.4622 -0.7387 1.9894
37 1 5.3781 -2.5985 1.1989
38 1 5.2129 -4.6603 2.5328
39 1 4.5214 -3.7636 3.9513
40 1 8.6830 -2.0186 4.0211
41 1 10.6194 -1.9756 5.6528
42 1 12.8090 -2.9685 6.1680
43 1 13.4740 -5.0989 5.1449
44 1 13.7161 -7.8485 5.8551
45 1 9.7064 -5.2491 3.0614
46 1 5.5763 -1.4122 4.0700
47 1 6.7595 -1.2156 2.7070
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000496849652.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:53:27
Heat of formation + Delta-G solvation = -65.317362 kcal
Electronic energy + Delta-G solvation = -29155.408712 eV
Core-core repulsion = 24917.896464 eV
Total energy + Delta-G solvation = -4237.512248 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.14704 -41.37163 -40.05230 -38.78957 -37.70073 -36.61090 -36.19853 -34.84659
-32.55198 -31.75311 -31.09124 -29.02037 -28.08320 -27.28789 -27.15642 -24.70644
-23.30855 -22.76826 -22.24301 -21.75813 -20.74299 -20.07360 -19.62599 -18.99985
-18.12713 -17.65490 -17.35212 -17.11682 -16.77819 -16.48843 -16.15485 -16.13508
-15.45366 -15.19709 -14.97268 -14.84874 -14.72386 -14.57881 -14.03463 -13.99357
-13.75322 -13.62299 -13.20353 -13.18680 -13.10515 -13.04033 -12.84840 -12.82549
-12.55971 -12.31799 -12.22522 -12.05809 -11.93980 -11.80697 -11.58718 -11.44690
-11.36084 -11.08247 -10.77466 -10.30269 -9.97696 -9.36682 -8.70331 -8.61823
-6.37462 0.73051 0.93411 1.03131 1.35768 1.43862 1.47297 1.51756
1.66124 2.06845 2.22194 2.74202 2.76789 3.03222 3.09247 3.67628
3.72678 3.91959 3.92568 4.12984 4.19049 4.31670 4.36346 4.42908
4.45961 4.53427 4.56899 4.62510 4.75491 4.78050 4.95409 5.00342
5.01138 5.08858 5.11611 5.18888 5.26059 5.31733 5.34699 5.36971
5.46731 5.73000 5.81828 6.04214 6.08937 6.15454 6.36877 6.37733
6.67848 6.84591 6.93992 7.00387 7.25305 7.46374 8.36822
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.022226 B = 0.001754 C = 0.001690
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1259.469734 B =15958.192645 C =16568.008139
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.148 3.852
3 C -0.164 4.164
4 N -0.689 5.689
5 C 0.643 3.357
6 O -0.604 6.604
7 O -0.342 6.342
8 C 0.081 3.919
9 C 0.127 3.873
10 N -0.665 5.665
11 C 0.732 3.268
12 O -0.611 6.611
13 N -0.663 5.663
14 C 0.173 3.827
15 C -0.246 4.246
16 C -0.088 4.088
17 C -0.192 4.192
18 C 0.091 3.909
19 C -0.506 4.506
20 H 0.064 0.936
21 C 0.035 3.965
22 N -0.829 5.829
23 Si 0.984 3.016
24 H -0.263 1.263
25 H -0.256 1.256
26 H -0.266 1.266
27 C -0.235 4.235
28 C 0.095 3.905
29 H 0.078 0.922
30 H 0.089 0.911
31 H 0.064 0.936
32 H 0.071 0.929
33 H 0.083 0.917
34 H 0.071 0.929
35 H 0.036 0.964
36 H 0.420 0.580
37 H 0.119 0.881
38 H 0.082 0.918
39 H 0.116 0.884
40 H 0.417 0.583
41 H 0.134 0.866
42 H 0.127 0.873
43 H 0.100 0.900
44 H 0.288 0.712
45 H 0.083 0.917
46 H 0.122 0.878
47 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.907 18.234 -5.989 31.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.045 3.955
3 C -0.222 4.222
4 N -0.350 5.350
5 C 0.395 3.605
6 O -0.495 6.495
7 O -0.254 6.254
8 C 0.023 3.977
9 C 0.004 3.996
10 N -0.407 5.407
11 C 0.436 3.564
12 O -0.490 6.490
13 N -0.311 5.311
14 C 0.079 3.921
15 C -0.267 4.267
16 C -0.107 4.107
17 C -0.212 4.212
18 C 0.088 3.912
19 C -0.536 4.536
20 H 0.082 0.918
21 C -0.179 4.179
22 N -0.456 5.456
23 Si 0.804 3.196
24 H -0.187 1.187
25 H -0.180 1.180
26 H -0.191 1.191
27 C -0.257 4.257
28 C -0.028 4.028
29 H 0.097 0.903
30 H 0.107 0.893
31 H 0.083 0.917
32 H 0.090 0.910
33 H 0.102 0.898
34 H 0.090 0.910
35 H 0.055 0.945
36 H 0.258 0.742
37 H 0.137 0.863
38 H 0.100 0.900
39 H 0.134 0.866
40 H 0.254 0.746
41 H 0.152 0.848
42 H 0.145 0.855
43 H 0.118 0.882
44 H 0.099 0.901
45 H 0.101 0.899
46 H 0.140 0.860
47 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -24.193 17.187 -6.120 30.301
hybrid contribution 0.345 -0.615 -0.003 0.705
sum -23.849 16.572 -6.122 29.680
Atomic orbital electron populations
1.22060 0.90954 1.03475 1.04622 1.21138 0.95879 0.92515 0.85941
1.22210 1.00679 0.95533 1.03774 1.44896 1.14135 1.56829 1.19114
1.18412 0.83303 0.77441 0.81299 1.91005 1.58230 1.65182 1.35060
1.86272 1.34519 1.66671 1.37961 1.24352 0.79133 0.93637 1.00577
1.23168 0.80723 0.97246 0.98479 1.48007 1.08495 1.11881 1.72311
1.15215 0.79309 0.84273 0.77612 1.90995 1.83352 1.14859 1.59783
1.42224 1.06036 1.09712 1.73115 1.17323 0.84013 0.94310 0.96408
1.20436 0.96697 1.03966 1.05633 1.20829 0.96160 0.95054 0.98659
1.21213 1.00018 0.96117 1.03825 1.17835 0.89911 0.92457 0.90989
1.19742 1.26293 1.03098 1.04442 0.91791 1.26716 0.94890 1.01073
0.95194 1.69875 1.29420 1.36768 1.09523 0.85150 0.78621 0.76752
0.79062 1.18694 1.18042 1.19109 1.20950 0.96742 0.99740 1.08224
1.23690 0.94665 0.85223 0.99173 0.90285 0.89253 0.91670 0.91034
0.89807 0.90956 0.94470 0.74210 0.86299 0.89988 0.86564 0.74563
0.84802 0.85487 0.88198 0.90133 0.89909 0.86011 0.88242
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.46 9.38 71.98 0.68 0.22 16
2 C 0.15 1.37 3.18 44.99 0.14 1.51 16
3 C -0.16 -1.45 9.48 71.98 0.68 -0.76 16
4 N -0.69 -7.50 5.08 -570.15 -2.90 -10.39 16
5 C 0.64 11.86 8.71 129.79 1.13 13.00 16
6 O -0.60 -15.75 15.21 19.80 0.30 -15.45 16
7 O -0.34 -5.65 10.33 -55.48 -0.57 -6.23 16
8 C 0.08 1.51 4.64 31.02 0.14 1.65 16
9 C 0.13 2.73 8.46 83.17 0.70 3.44 16
10 N -0.67 -18.31 3.69 -876.56 -3.23 -21.54 16
11 C 0.73 28.89 8.53 179.05 1.53 30.42 16
12 O -0.61 -31.42 14.79 -3.99 -0.06 -31.48 16
13 N -0.66 -24.57 5.35 -317.33 -1.70 -26.26 16
14 C 0.17 8.11 6.28 38.09 0.24 8.35 16
15 C -0.25 -10.51 9.97 22.58 0.23 -10.28 16
16 C -0.09 -4.07 10.02 22.20 0.22 -3.85 16
17 C -0.19 -10.51 8.66 22.75 0.20 -10.31 16
18 C 0.09 5.39 5.52 -21.31 -0.12 5.27 16
19 C -0.51 -30.27 9.04 23.46 0.21 -30.06 16
20 H 0.06 3.81 7.89 -2.91 -0.02 3.79 16
21 C 0.04 1.93 5.15 85.25 0.44 2.36 16
22 N -0.83 -46.34 11.15 21.83 0.24 -46.10 16
23 Si 0.98 41.48 29.59 68.60 2.03 43.51 16
24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16
25 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16
26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16
27 C -0.23 -13.20 8.39 22.85 0.19 -13.01 16
28 C 0.09 1.64 8.16 83.26 0.68 2.32 16
29 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16
30 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16
31 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16
32 H 0.07 0.99 7.58 -2.39 -0.02 0.97 16
33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16
34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16
35 H 0.04 0.53 8.14 -2.38 -0.02 0.52 16
36 H 0.42 2.22 8.71 -92.71 -0.81 1.41 16
37 H 0.12 2.65 7.06 -2.39 -0.02 2.64 16
38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
39 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16
40 H 0.42 11.38 8.54 -92.71 -0.79 10.59 16
41 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16
42 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16
43 H 0.10 5.65 6.43 -2.91 -0.02 5.64 16
44 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16
45 H 0.08 4.99 6.39 -2.91 -0.02 4.97 16
46 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16
47 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16
Total: -1.00 -82.56 398.52 0.83 -81.74
By element:
Atomic # 1 Polarization: 32.52 SS G_CDS: -0.58 Total: 31.94 kcal
Atomic # 6 Polarization: -7.03 SS G_CDS: 7.29 Total: 0.26 kcal
Atomic # 7 Polarization: -96.71 SS G_CDS: -7.58 Total: -104.29 kcal
Atomic # 8 Polarization: -52.83 SS G_CDS: -0.33 Total: -53.16 kcal
Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal
Total: -82.56 0.83 -81.74 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000496849652.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.420 kcal
(2) G-P(sol) polarization free energy of solvation -82.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds