Wall clock time and date at job start Wed Apr 1 2020 04:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 N 1.46494 * 109.47126 * 119.99987 * 2 1 3 5 5 C 1.34774 * 120.00320 * 155.00555 * 4 2 1 6 6 O 1.21513 * 119.99744 * 359.97438 * 5 4 2 7 7 O 1.34638 * 120.00737 * 180.02562 * 5 4 2 8 8 C 1.45193 * 117.00270 * 179.97438 * 7 5 4 9 9 C 1.53501 * 114.20547 * 209.99450 * 8 7 5 10 10 N 1.47065 * 87.98729 * 220.14768 * 9 8 7 11 11 C 1.34775 * 136.05849 * 207.08629 * 10 9 8 12 12 O 1.21586 * 120.00016 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99877 * 180.02562 * 11 10 9 14 14 C 1.39960 * 119.99968 * 185.14503 * 13 11 10 15 15 C 1.39282 * 119.94501 * 213.03830 * 14 13 11 16 16 C 1.38495 * 120.42603 * 179.74469 * 15 14 13 17 17 C 1.37678 * 120.32319 * 0.25095 * 16 15 14 18 18 C 1.40744 * 119.88095 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.21024 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00675 * 209.19286 * 19 18 17 21 21 C 1.39938 * 119.99798 * 29.19038 * 19 18 17 22 22 N 1.30837 * 119.99899 * 15.62875 * 21 19 18 23 23 Si 1.86791 * 120.00173 * 195.62436 * 21 19 18 24 24 H 1.48502 * 109.47057 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47386 * 119.99992 * 23 21 19 26 26 H 1.48498 * 109.47566 * 240.00449 * 23 21 19 27 27 C 1.38234 * 119.94472 * 33.28946 * 14 13 11 28 28 C 1.47069 * 87.88177 * 27.34515 * 10 9 8 29 29 H 1.09004 * 109.47393 * 299.99746 * 1 2 3 30 30 H 1.08994 * 109.47372 * 60.00392 * 1 2 3 31 31 H 1.09005 * 109.46696 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47260 * 239.99862 * 2 1 3 33 33 H 1.09003 * 109.47541 * 299.99967 * 3 2 1 34 34 H 1.08997 * 109.47238 * 59.99848 * 3 2 1 35 35 H 1.09004 * 109.47433 * 179.97438 * 3 2 1 36 36 H 0.97001 * 120.00296 * 334.99894 * 4 2 1 37 37 H 1.08998 * 113.28715 * 343.06761 * 8 7 5 38 38 H 1.09000 * 113.46621 * 105.37089 * 9 8 7 39 39 H 1.09000 * 113.52303 * 334.94314 * 9 8 7 40 40 H 0.97003 * 120.00169 * 5.14713 * 13 11 10 41 41 H 1.08002 * 119.78977 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.83537 * 180.27468 * 16 15 14 43 43 H 1.07995 * 120.06055 * 179.97438 * 17 16 15 44 44 H 0.96998 * 120.00100 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.16084 * 359.97438 * 27 14 13 46 46 H 1.09004 * 113.46920 * 87.43952 * 28 10 9 47 47 H 1.09006 * 113.46488 * 217.87374 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2590 1.1944 6 8 3.9368 -1.1992 0.2006 7 8 3.6890 -1.8942 2.2935 8 6 5.0139 -2.4834 2.2197 9 6 5.1989 -3.7285 3.0982 10 7 6.5399 -3.2278 3.4353 11 6 7.7142 -3.7739 3.8086 12 8 7.8120 -4.9795 3.9322 13 7 8.7798 -2.9835 4.0459 14 6 10.0258 -3.5549 4.3281 15 6 10.9040 -2.9130 5.1982 16 6 12.1373 -3.4721 5.4886 17 6 12.5111 -4.6670 4.9158 18 6 11.6365 -5.3240 4.0302 19 6 12.0135 -6.5513 3.4376 20 1 11.6286 -6.8225 2.4656 21 6 12.8855 -7.4145 4.1105 22 7 13.1114 -7.2504 5.3887 23 14 13.7267 -8.8012 3.1839 24 1 13.3068 -8.7711 1.7598 25 1 15.1995 -8.6314 3.2689 26 1 13.3430 -10.1033 3.7861 27 6 10.3851 -4.7526 3.7389 28 6 6.0339 -1.8685 3.1922 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4426 0.0005 36 1 1.4622 -0.7387 1.9894 37 1 5.3781 -2.5985 1.1989 38 1 5.2129 -4.6603 2.5328 39 1 4.5214 -3.7636 3.9513 40 1 8.6830 -2.0186 4.0211 41 1 10.6194 -1.9756 5.6528 42 1 12.8090 -2.9685 6.1680 43 1 13.4740 -5.0989 5.1449 44 1 13.7161 -7.8485 5.8551 45 1 9.7064 -5.2491 3.0614 46 1 5.5763 -1.4122 4.0700 47 1 6.7595 -1.2156 2.7070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496849652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:27 Heat of formation + Delta-G solvation = -65.317362 kcal Electronic energy + Delta-G solvation = -29155.408712 eV Core-core repulsion = 24917.896464 eV Total energy + Delta-G solvation = -4237.512248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14704 -41.37163 -40.05230 -38.78957 -37.70073 -36.61090 -36.19853 -34.84659 -32.55198 -31.75311 -31.09124 -29.02037 -28.08320 -27.28789 -27.15642 -24.70644 -23.30855 -22.76826 -22.24301 -21.75813 -20.74299 -20.07360 -19.62599 -18.99985 -18.12713 -17.65490 -17.35212 -17.11682 -16.77819 -16.48843 -16.15485 -16.13508 -15.45366 -15.19709 -14.97268 -14.84874 -14.72386 -14.57881 -14.03463 -13.99357 -13.75322 -13.62299 -13.20353 -13.18680 -13.10515 -13.04033 -12.84840 -12.82549 -12.55971 -12.31799 -12.22522 -12.05809 -11.93980 -11.80697 -11.58718 -11.44690 -11.36084 -11.08247 -10.77466 -10.30269 -9.97696 -9.36682 -8.70331 -8.61823 -6.37462 0.73051 0.93411 1.03131 1.35768 1.43862 1.47297 1.51756 1.66124 2.06845 2.22194 2.74202 2.76789 3.03222 3.09247 3.67628 3.72678 3.91959 3.92568 4.12984 4.19049 4.31670 4.36346 4.42908 4.45961 4.53427 4.56899 4.62510 4.75491 4.78050 4.95409 5.00342 5.01138 5.08858 5.11611 5.18888 5.26059 5.31733 5.34699 5.36971 5.46731 5.73000 5.81828 6.04214 6.08937 6.15454 6.36877 6.37733 6.67848 6.84591 6.93992 7.00387 7.25305 7.46374 8.36822 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.001754 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.469734 B =15958.192645 C =16568.008139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.689 5.689 5 C 0.643 3.357 6 O -0.604 6.604 7 O -0.342 6.342 8 C 0.081 3.919 9 C 0.127 3.873 10 N -0.665 5.665 11 C 0.732 3.268 12 O -0.611 6.611 13 N -0.663 5.663 14 C 0.173 3.827 15 C -0.246 4.246 16 C -0.088 4.088 17 C -0.192 4.192 18 C 0.091 3.909 19 C -0.506 4.506 20 H 0.064 0.936 21 C 0.035 3.965 22 N -0.829 5.829 23 Si 0.984 3.016 24 H -0.263 1.263 25 H -0.256 1.256 26 H -0.266 1.266 27 C -0.235 4.235 28 C 0.095 3.905 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.420 0.580 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.417 0.583 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.288 0.712 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.907 18.234 -5.989 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.350 5.350 5 C 0.395 3.605 6 O -0.495 6.495 7 O -0.254 6.254 8 C 0.023 3.977 9 C 0.004 3.996 10 N -0.407 5.407 11 C 0.436 3.564 12 O -0.490 6.490 13 N -0.311 5.311 14 C 0.079 3.921 15 C -0.267 4.267 16 C -0.107 4.107 17 C -0.212 4.212 18 C 0.088 3.912 19 C -0.536 4.536 20 H 0.082 0.918 21 C -0.179 4.179 22 N -0.456 5.456 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.180 1.180 26 H -0.191 1.191 27 C -0.257 4.257 28 C -0.028 4.028 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.258 0.742 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.254 0.746 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.140 0.860 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.193 17.187 -6.120 30.301 hybrid contribution 0.345 -0.615 -0.003 0.705 sum -23.849 16.572 -6.122 29.680 Atomic orbital electron populations 1.22060 0.90954 1.03475 1.04622 1.21138 0.95879 0.92515 0.85941 1.22210 1.00679 0.95533 1.03774 1.44896 1.14135 1.56829 1.19114 1.18412 0.83303 0.77441 0.81299 1.91005 1.58230 1.65182 1.35060 1.86272 1.34519 1.66671 1.37961 1.24352 0.79133 0.93637 1.00577 1.23168 0.80723 0.97246 0.98479 1.48007 1.08495 1.11881 1.72311 1.15215 0.79309 0.84273 0.77612 1.90995 1.83352 1.14859 1.59783 1.42224 1.06036 1.09712 1.73115 1.17323 0.84013 0.94310 0.96408 1.20436 0.96697 1.03966 1.05633 1.20829 0.96160 0.95054 0.98659 1.21213 1.00018 0.96117 1.03825 1.17835 0.89911 0.92457 0.90989 1.19742 1.26293 1.03098 1.04442 0.91791 1.26716 0.94890 1.01073 0.95194 1.69875 1.29420 1.36768 1.09523 0.85150 0.78621 0.76752 0.79062 1.18694 1.18042 1.19109 1.20950 0.96742 0.99740 1.08224 1.23690 0.94665 0.85223 0.99173 0.90285 0.89253 0.91670 0.91034 0.89807 0.90956 0.94470 0.74210 0.86299 0.89988 0.86564 0.74563 0.84802 0.85487 0.88198 0.90133 0.89909 0.86011 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.38 71.98 0.68 0.22 16 2 C 0.15 1.37 3.18 44.99 0.14 1.51 16 3 C -0.16 -1.45 9.48 71.98 0.68 -0.76 16 4 N -0.69 -7.50 5.08 -570.15 -2.90 -10.39 16 5 C 0.64 11.86 8.71 129.79 1.13 13.00 16 6 O -0.60 -15.75 15.21 19.80 0.30 -15.45 16 7 O -0.34 -5.65 10.33 -55.48 -0.57 -6.23 16 8 C 0.08 1.51 4.64 31.02 0.14 1.65 16 9 C 0.13 2.73 8.46 83.17 0.70 3.44 16 10 N -0.67 -18.31 3.69 -876.56 -3.23 -21.54 16 11 C 0.73 28.89 8.53 179.05 1.53 30.42 16 12 O -0.61 -31.42 14.79 -3.99 -0.06 -31.48 16 13 N -0.66 -24.57 5.35 -317.33 -1.70 -26.26 16 14 C 0.17 8.11 6.28 38.09 0.24 8.35 16 15 C -0.25 -10.51 9.97 22.58 0.23 -10.28 16 16 C -0.09 -4.07 10.02 22.20 0.22 -3.85 16 17 C -0.19 -10.51 8.66 22.75 0.20 -10.31 16 18 C 0.09 5.39 5.52 -21.31 -0.12 5.27 16 19 C -0.51 -30.27 9.04 23.46 0.21 -30.06 16 20 H 0.06 3.81 7.89 -2.91 -0.02 3.79 16 21 C 0.04 1.93 5.15 85.25 0.44 2.36 16 22 N -0.83 -46.34 11.15 21.83 0.24 -46.10 16 23 Si 0.98 41.48 29.59 68.60 2.03 43.51 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 C -0.23 -13.20 8.39 22.85 0.19 -13.01 16 28 C 0.09 1.64 8.16 83.26 0.68 2.32 16 29 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 32 H 0.07 0.99 7.58 -2.39 -0.02 0.97 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.04 0.53 8.14 -2.38 -0.02 0.52 16 36 H 0.42 2.22 8.71 -92.71 -0.81 1.41 16 37 H 0.12 2.65 7.06 -2.39 -0.02 2.64 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.42 11.38 8.54 -92.71 -0.79 10.59 16 41 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 42 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.10 5.65 6.43 -2.91 -0.02 5.64 16 44 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 45 H 0.08 4.99 6.39 -2.91 -0.02 4.97 16 46 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -82.56 398.52 0.83 -81.74 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.58 Total: 31.94 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 7.29 Total: 0.26 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -7.58 Total: -104.29 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.33 Total: -53.16 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -82.56 0.83 -81.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496849652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.420 kcal (2) G-P(sol) polarization free energy of solvation -82.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds