Wall clock time and date at job start Wed Apr 1 2020 04:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47496 * 2 1 4 4 H 1.08996 * 109.47427 * 178.62537 * 3 2 1 5 5 C 1.50695 * 109.47545 * 298.63141 * 3 2 1 6 6 H 1.08007 * 120.00326 * 119.99824 * 5 3 2 7 7 C 1.37875 * 120.00072 * 300.00069 * 5 3 2 8 8 N 1.31509 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47602 * 89.99705 * 9 7 5 11 11 H 1.48501 * 109.47122 * 209.99906 * 9 7 5 12 12 H 1.48501 * 109.47172 * 329.99371 * 9 7 5 13 13 N 1.46902 * 109.47093 * 58.63300 * 3 2 1 14 14 C 1.46901 * 111.00429 * 85.69157 * 13 3 2 15 15 C 1.53000 * 109.47458 * 174.82693 * 14 13 3 16 16 H 1.09004 * 109.46556 * 59.99972 * 15 14 13 17 17 O 1.42900 * 109.46928 * 300.00636 * 15 14 13 18 18 C 1.52991 * 109.47169 * 180.02562 * 15 14 13 19 19 N 1.46498 * 109.47384 * 185.00123 * 18 15 14 20 20 C 1.35480 * 127.82253 * 91.38349 * 19 18 15 21 21 O 1.21618 * 126.87432 * 359.95133 * 20 19 18 22 22 O 1.34235 * 106.25708 * 179.97438 * 20 19 18 23 23 N 1.21014 * 110.89002 * 0.02562 * 22 20 19 24 24 C 1.29915 * 111.54840 * 359.74641 * 23 22 20 25 25 C 1.48083 * 126.52504 * 180.25199 * 24 23 22 26 26 C 1.39462 * 120.12699 * 143.65346 * 25 24 23 27 27 C 1.38002 * 119.85960 * 179.72065 * 26 25 24 28 28 C 1.38336 * 120.13157 * 0.53627 * 27 26 25 29 29 C 1.38338 * 120.26750 * 359.76195 * 28 27 26 30 30 C 1.37990 * 120.13562 * 359.95888 * 29 28 27 31 31 H 1.09001 * 109.46330 * 293.20566 * 1 2 3 32 32 H 1.08995 * 109.47472 * 173.20696 * 1 2 3 33 33 H 1.08993 * 109.46885 * 53.19992 * 1 2 3 34 34 H 1.08998 * 109.47195 * 120.00853 * 2 1 3 35 35 H 1.09005 * 109.46728 * 240.00654 * 2 1 3 36 36 H 0.96996 * 120.00372 * 180.02562 * 8 7 5 37 37 H 1.00903 * 110.99759 * 321.73922 * 13 3 2 38 38 H 1.09000 * 109.47047 * 294.82985 * 14 13 3 39 39 H 1.08999 * 109.46564 * 54.82971 * 14 13 3 40 40 H 0.96699 * 113.99835 * 299.99474 * 17 15 14 41 41 H 1.09001 * 109.47453 * 305.00444 * 18 15 14 42 42 H 1.09002 * 109.47462 * 65.00257 * 18 15 14 43 43 H 1.07998 * 120.06970 * 0.02562 * 26 25 24 44 44 H 1.07987 * 119.93185 * 180.29778 * 27 26 25 45 45 H 1.07995 * 119.86498 * 179.74198 * 28 27 26 46 46 H 1.08008 * 119.93016 * 179.97438 * 29 28 27 47 47 H 1.08003 * 120.06656 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1298 1.4425 0.0247 5 6 1.5658 2.1430 -1.2470 6 1 0.9429 3.0219 -1.1689 7 6 1.9269 1.6621 -2.4877 8 7 2.6857 0.5922 -2.5828 9 14 1.3395 2.5310 -4.0334 10 1 2.3271 3.5692 -4.4234 11 1 1.1990 1.5434 -5.1334 12 1 0.0253 3.1713 -3.7723 13 7 1.5237 2.1444 1.1826 14 6 2.3902 1.9211 2.3476 15 6 1.8946 2.7678 3.5217 16 1 0.8721 2.4824 3.7693 17 8 1.9290 4.1499 3.1602 18 6 2.7974 2.5357 4.7348 19 7 2.2549 3.2523 5.8916 20 6 1.3907 2.7881 6.8260 21 8 0.8989 1.6770 6.8772 22 8 1.1855 3.8000 7.6838 23 7 1.8199 4.7776 7.3577 24 6 2.5138 4.5589 6.2813 25 6 3.4083 5.5214 5.5985 26 6 4.5903 5.0790 5.0052 27 6 5.4170 5.9799 4.3654 28 6 5.0808 7.3210 4.3215 29 6 3.9127 7.7667 4.9136 30 6 3.0751 6.8746 5.5514 31 1 -0.3632 0.4050 0.9446 32 1 -0.3634 -1.0204 -0.1215 33 1 -0.3633 0.6156 -0.8228 34 1 1.8934 -0.5140 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 2.9401 0.2541 -3.4556 37 1 0.5735 1.8685 1.3805 38 1 2.3639 0.8669 2.6233 39 1 3.4126 2.2065 2.0999 40 1 2.8098 4.4735 2.9268 41 1 2.8417 1.4693 4.9561 42 1 3.8002 2.9035 4.5171 43 1 4.8557 4.0327 5.0421 44 1 6.3302 5.6378 3.9014 45 1 5.7329 8.0230 3.8232 46 1 3.6556 8.8151 4.8765 47 1 2.1632 7.2238 6.0129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565175157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:39 Heat of formation + Delta-G solvation = 4.059602 kcal Electronic energy + Delta-G solvation = -31042.597721 eV Core-core repulsion = 26808.093884 eV Total energy + Delta-G solvation = -4234.503837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.44960 -39.74262 -38.94468 -37.99618 -36.65500 -35.77797 -33.01681 -32.57165 -31.45419 -31.13736 -30.63614 -29.66110 -27.07414 -25.56252 -24.74873 -23.44919 -23.11772 -22.70700 -21.79462 -21.60765 -19.40189 -18.56554 -18.46939 -17.61147 -16.91157 -16.70099 -16.23400 -15.84886 -15.71575 -15.45296 -15.16007 -14.94706 -14.46531 -14.32317 -14.10830 -13.94410 -13.80577 -13.40275 -13.19567 -13.02386 -12.98045 -12.49096 -12.45157 -12.25004 -11.87496 -11.77105 -11.67449 -11.49402 -11.00499 -10.93892 -10.85120 -10.73113 -10.58028 -10.28942 -9.99599 -9.85720 -9.69241 -9.40410 -9.37822 -9.02338 -8.87173 -8.37941 -7.28295 -6.01922 -4.04104 0.39905 0.97396 1.43471 1.71329 1.95287 3.04935 3.30111 3.32135 3.36973 3.41356 3.74756 4.01795 4.21539 4.35134 4.42674 4.47401 4.56298 4.59745 4.71038 4.94918 4.99977 5.11978 5.15716 5.24313 5.29644 5.37003 5.40011 5.58498 5.61298 5.71811 5.95277 5.95838 6.01826 6.09085 6.10429 6.25678 6.30032 6.46535 6.48271 6.81920 7.14698 7.18918 7.20245 7.41108 7.65718 7.71611 7.84224 7.90985 8.22184 8.45245 8.55287 9.02614 9.60460 11.04705 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011305 B = 0.003024 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.232903 B = 9258.126223 C =11001.306239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.149 4.149 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.672 5.672 14 C 0.033 3.967 15 C 0.095 3.905 16 H 0.100 0.900 17 O -0.534 6.534 18 C 0.094 3.906 19 N -0.540 5.540 20 C 0.559 3.441 21 O -0.478 6.478 22 O -0.004 6.004 23 N -0.334 5.334 24 C 0.288 3.712 25 C -0.023 4.023 26 C -0.099 4.099 27 C -0.113 4.113 28 C -0.096 4.096 29 C -0.115 4.115 30 C -0.068 4.068 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.010 0.990 35 H 0.098 0.902 36 H 0.259 0.741 37 H 0.329 0.671 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.369 0.631 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 10.354 16.640 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.189 4.189 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.098 4.098 15 C 0.034 3.966 16 H 0.118 0.882 17 O -0.338 6.338 18 C -0.026 4.026 19 N -0.276 5.276 20 C 0.311 3.689 21 O -0.358 6.358 22 O -0.047 6.047 23 N -0.069 5.069 24 C 0.020 3.980 25 C -0.025 4.025 26 C -0.119 4.119 27 C -0.131 4.131 28 C -0.115 4.115 29 C -0.133 4.133 30 C -0.087 4.087 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.148 0.852 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.216 0.784 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.044 10.818 17.286 21.269 hybrid contribution 0.211 -1.345 -1.290 1.875 sum 6.255 9.473 15.996 19.615 Atomic orbital electron populations 1.21625 0.97864 0.99197 1.00451 1.22148 0.94689 1.01347 1.00709 1.19217 0.94927 0.88080 0.86831 0.95073 1.21076 1.30759 1.11430 0.89364 0.91950 1.24911 0.95416 0.95104 0.98950 1.69856 1.36979 1.22883 1.24018 0.86557 0.79219 0.79229 0.82759 1.20809 1.21472 1.19917 1.60724 1.04399 1.62553 1.02699 1.22453 0.98846 0.96503 0.92003 1.22350 0.99687 0.83833 0.90742 0.88215 1.86655 1.34633 1.23098 1.89404 1.22863 0.98767 0.98101 0.82847 1.46779 1.42304 1.12443 1.26111 1.20605 0.81419 0.86552 0.80301 1.91184 1.54385 1.15485 1.74761 1.85573 1.56420 1.17379 1.45281 1.74252 1.10119 1.08224 1.14295 1.22688 0.97727 0.84924 0.92662 1.17267 0.93372 0.90969 1.00911 1.21232 0.93259 1.00183 0.97213 1.21108 0.99857 0.93175 0.98982 1.21404 0.96572 0.95948 0.97527 1.21150 0.94420 1.00044 0.97673 1.21163 0.99584 0.91008 0.96989 0.95420 0.95399 0.91359 0.97127 0.88406 0.93093 0.85189 0.95270 0.91038 0.78409 0.87042 0.87636 0.85446 0.84880 0.85256 0.84998 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.31 37.16 0.35 -2.42 16 2 C -0.15 -3.37 5.58 -26.73 -0.15 -3.52 16 3 C 0.22 5.07 2.33 -68.87 -0.16 4.91 16 4 H 0.03 0.80 7.71 -51.93 -0.40 0.40 16 5 C -0.49 -12.78 7.54 -34.44 -0.26 -13.04 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.50 5.30 -17.82 -0.09 1.41 16 8 N -0.90 -24.62 11.31 55.43 0.63 -23.99 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.67 -13.20 6.07 -107.96 -0.66 -13.86 16 14 C 0.03 0.51 5.18 -3.82 -0.02 0.49 16 15 C 0.10 1.23 3.46 -26.74 -0.09 1.14 16 16 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 17 O -0.53 -7.37 12.78 -35.23 -0.45 -7.82 16 18 C 0.09 0.95 5.62 -4.05 -0.02 0.93 16 19 N -0.54 -6.35 2.81 -119.33 -0.34 -6.69 16 20 C 0.56 7.95 9.34 54.34 0.51 8.46 16 21 O -0.48 -8.03 18.00 -18.90 -0.34 -8.37 16 22 O 0.00 -0.06 11.25 -7.53 -0.08 -0.15 16 23 N -0.33 -4.23 12.04 32.10 0.39 -3.84 16 24 C 0.29 3.25 7.43 -153.61 -1.14 2.11 16 25 C -0.02 -0.21 5.52 -104.95 -0.58 -0.79 16 26 C -0.10 -0.73 8.44 -39.21 -0.33 -1.07 16 27 C -0.11 -0.72 10.03 -39.63 -0.40 -1.12 16 28 C -0.10 -0.60 10.04 -39.51 -0.40 -0.99 16 29 C -0.11 -0.78 10.03 -39.64 -0.40 -1.18 16 30 C -0.07 -0.57 9.76 -39.22 -0.38 -0.95 16 31 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.54 7.04 -51.93 -0.37 1.17 16 34 H 0.01 0.21 7.64 -51.93 -0.40 -0.18 16 35 H 0.10 2.51 6.04 -51.93 -0.31 2.19 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.33 6.48 6.37 -39.29 -0.25 6.23 16 38 H 0.03 0.44 7.64 -51.93 -0.40 0.04 16 39 H 0.07 1.04 7.93 -51.93 -0.41 0.62 16 40 H 0.37 4.24 8.61 45.56 0.39 4.63 16 41 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.11 0.78 4.93 -51.93 -0.26 0.52 16 43 H 0.13 0.78 5.77 -52.49 -0.30 0.47 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 47 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -30.92 389.03 -9.13 -40.05 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.55 Total: 8.53 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.57 Total: -5.64 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.02 Total: -48.37 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.88 Total: -16.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.92 -9.13 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565175157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.110 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds