Wall clock time and date at job start Wed Apr 1 2020 04:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47496 * 2 1 4 4 H 1.08996 * 109.47427 * 178.62537 * 3 2 1 5 5 C 1.50695 * 109.47545 * 298.63141 * 3 2 1 6 6 H 1.08007 * 120.00326 * 119.99824 * 5 3 2 7 7 C 1.37875 * 120.00072 * 300.00069 * 5 3 2 8 8 N 1.31509 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47602 * 89.99705 * 9 7 5 11 11 H 1.48501 * 109.47122 * 209.99906 * 9 7 5 12 12 H 1.48501 * 109.47172 * 329.99371 * 9 7 5 13 13 N 1.46902 * 109.47093 * 58.63300 * 3 2 1 14 14 C 1.46901 * 111.00429 * 85.69157 * 13 3 2 15 15 C 1.53000 * 109.47458 * 174.82693 * 14 13 3 16 16 H 1.09004 * 109.46556 * 59.99972 * 15 14 13 17 17 O 1.42900 * 109.46928 * 300.00636 * 15 14 13 18 18 C 1.52991 * 109.47169 * 180.02562 * 15 14 13 19 19 N 1.46498 * 109.47384 * 185.00123 * 18 15 14 20 20 C 1.35480 * 127.82253 * 91.38349 * 19 18 15 21 21 O 1.21618 * 126.87432 * 359.95133 * 20 19 18 22 22 O 1.34235 * 106.25708 * 179.97438 * 20 19 18 23 23 N 1.21014 * 110.89002 * 0.02562 * 22 20 19 24 24 C 1.29915 * 111.54840 * 359.74641 * 23 22 20 25 25 C 1.48083 * 126.52504 * 180.25199 * 24 23 22 26 26 C 1.39462 * 120.12699 * 143.65346 * 25 24 23 27 27 C 1.38002 * 119.85960 * 179.72065 * 26 25 24 28 28 C 1.38336 * 120.13157 * 0.53627 * 27 26 25 29 29 C 1.38338 * 120.26750 * 359.76195 * 28 27 26 30 30 C 1.37990 * 120.13562 * 359.95888 * 29 28 27 31 31 H 1.09001 * 109.46330 * 293.20566 * 1 2 3 32 32 H 1.08995 * 109.47472 * 173.20696 * 1 2 3 33 33 H 1.08993 * 109.46885 * 53.19992 * 1 2 3 34 34 H 1.08998 * 109.47195 * 120.00853 * 2 1 3 35 35 H 1.09005 * 109.46728 * 240.00654 * 2 1 3 36 36 H 0.96996 * 120.00372 * 180.02562 * 8 7 5 37 37 H 1.00903 * 110.99759 * 321.73922 * 13 3 2 38 38 H 1.09000 * 109.47047 * 294.82985 * 14 13 3 39 39 H 1.08999 * 109.46564 * 54.82971 * 14 13 3 40 40 H 0.96699 * 113.99835 * 299.99474 * 17 15 14 41 41 H 1.09001 * 109.47453 * 305.00444 * 18 15 14 42 42 H 1.09002 * 109.47462 * 65.00257 * 18 15 14 43 43 H 1.07998 * 120.06970 * 0.02562 * 26 25 24 44 44 H 1.07987 * 119.93185 * 180.29778 * 27 26 25 45 45 H 1.07995 * 119.86498 * 179.74198 * 28 27 26 46 46 H 1.08008 * 119.93016 * 179.97438 * 29 28 27 47 47 H 1.08003 * 120.06656 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1298 1.4425 0.0247 5 6 1.5658 2.1430 -1.2470 6 1 0.9429 3.0219 -1.1689 7 6 1.9269 1.6621 -2.4877 8 7 2.6857 0.5922 -2.5828 9 14 1.3395 2.5310 -4.0334 10 1 2.3271 3.5692 -4.4234 11 1 1.1990 1.5434 -5.1334 12 1 0.0253 3.1713 -3.7723 13 7 1.5237 2.1444 1.1826 14 6 2.3902 1.9211 2.3476 15 6 1.8946 2.7678 3.5217 16 1 0.8721 2.4824 3.7693 17 8 1.9290 4.1499 3.1602 18 6 2.7974 2.5357 4.7348 19 7 2.2549 3.2523 5.8916 20 6 1.3907 2.7881 6.8260 21 8 0.8989 1.6770 6.8772 22 8 1.1855 3.8000 7.6838 23 7 1.8199 4.7776 7.3577 24 6 2.5138 4.5589 6.2813 25 6 3.4083 5.5214 5.5985 26 6 4.5903 5.0790 5.0052 27 6 5.4170 5.9799 4.3654 28 6 5.0808 7.3210 4.3215 29 6 3.9127 7.7667 4.9136 30 6 3.0751 6.8746 5.5514 31 1 -0.3632 0.4050 0.9446 32 1 -0.3634 -1.0204 -0.1215 33 1 -0.3633 0.6156 -0.8228 34 1 1.8934 -0.5140 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 2.9401 0.2541 -3.4556 37 1 0.5735 1.8685 1.3805 38 1 2.3639 0.8669 2.6233 39 1 3.4126 2.2065 2.0999 40 1 2.8098 4.4735 2.9268 41 1 2.8417 1.4693 4.9561 42 1 3.8002 2.9035 4.5171 43 1 4.8557 4.0327 5.0421 44 1 6.3302 5.6378 3.9014 45 1 5.7329 8.0230 3.8232 46 1 3.6556 8.8151 4.8765 47 1 2.1632 7.2238 6.0129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565175157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:38 Heat of formation + Delta-G solvation = -15.398345 kcal Electronic energy + Delta-G solvation = -31043.441480 eV Core-core repulsion = 26808.093884 eV Total energy + Delta-G solvation = -4235.347597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.43258 -40.46746 -39.90838 -39.17485 -37.99204 -37.03312 -34.39600 -33.81759 -32.63954 -31.99798 -31.46036 -30.87513 -28.67785 -26.95214 -25.65624 -25.11344 -24.17292 -23.40049 -22.73101 -22.52979 -21.18549 -19.58601 -19.38530 -18.49274 -18.16831 -17.78556 -17.60065 -16.84314 -16.72767 -16.69303 -16.39033 -15.84330 -15.80044 -15.71300 -15.06086 -14.82547 -14.74185 -14.58587 -14.40546 -14.27784 -14.04815 -13.94018 -13.55069 -13.45722 -13.15934 -12.93975 -12.81923 -12.65567 -12.45883 -12.33146 -12.15450 -12.04944 -11.92692 -11.68958 -11.68373 -11.48207 -11.24594 -10.91788 -10.39717 -10.29533 -9.90792 -9.66065 -8.87555 -8.03920 -6.12023 -0.28853 0.45064 0.47648 0.79620 0.98122 1.43680 1.46236 1.55187 2.10898 2.47057 2.70504 2.94587 3.11543 3.24928 3.29575 3.47660 3.52636 3.82312 3.97637 4.01953 4.06792 4.16636 4.23168 4.37068 4.45687 4.51534 4.52818 4.59199 4.59676 4.68292 4.71525 4.77717 4.92531 4.99123 5.09243 5.09836 5.34992 5.39210 5.42354 5.49244 5.58974 5.66547 5.75975 5.86051 5.96593 6.12171 6.35289 6.69342 6.73360 6.87916 6.91690 7.00530 7.56328 9.00652 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011305 B = 0.003024 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.232903 B = 9258.126223 C =11001.306239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.498 4.498 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.035 3.965 15 C 0.109 3.891 16 H 0.080 0.920 17 O -0.548 6.548 18 C 0.097 3.903 19 N -0.532 5.532 20 C 0.554 3.446 21 O -0.511 6.511 22 O -0.015 6.015 23 N -0.354 5.354 24 C 0.303 3.697 25 C -0.046 4.046 26 C -0.099 4.099 27 C -0.114 4.114 28 C -0.093 4.093 29 C -0.118 4.118 30 C -0.080 4.080 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.259 0.741 37 H 0.328 0.672 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.380 0.620 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.150 0.850 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 11.475 16.510 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.184 4.184 3 C 0.116 3.884 4 H 0.025 0.975 5 C -0.537 4.537 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.095 4.095 15 C 0.047 3.953 16 H 0.098 0.902 17 O -0.354 6.354 18 C -0.022 4.022 19 N -0.268 5.268 20 C 0.307 3.693 21 O -0.394 6.394 22 O -0.054 6.054 23 N -0.091 5.091 24 C 0.035 3.965 25 C -0.048 4.048 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.111 4.111 29 C -0.136 4.136 30 C -0.100 4.100 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.173 0.827 45 H 0.171 0.829 46 H 0.168 0.832 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.438 11.956 17.169 22.205 hybrid contribution -0.141 -1.578 -1.257 2.022 sum 7.296 10.379 15.912 20.351 Atomic orbital electron populations 1.21517 0.96443 0.99835 1.00531 1.22009 0.95911 1.00577 0.99870 1.18942 0.93317 0.88603 0.87531 0.97505 1.21296 1.30368 1.11105 0.90892 0.93320 1.25525 0.95651 0.95699 1.01379 1.69972 1.37833 1.23824 1.24386 0.85722 0.78737 0.78315 0.79819 1.20346 1.21334 1.19863 1.60582 1.04901 1.62127 1.03379 1.22508 0.98553 0.97399 0.91071 1.22081 0.99147 0.83129 0.90905 0.90228 1.86636 1.35821 1.23330 1.89578 1.22947 0.99356 0.98879 0.81037 1.46838 1.41494 1.12698 1.25770 1.20742 0.81520 0.86350 0.80719 1.91145 1.55732 1.16788 1.75713 1.85557 1.56883 1.17512 1.45482 1.74252 1.11376 1.07942 1.15498 1.23169 0.96787 0.84697 0.91800 1.17392 0.94117 0.90813 1.02445 1.21399 0.92596 1.01149 0.96719 1.21425 1.00299 0.93111 0.98346 1.21771 0.96334 0.96484 0.96538 1.21405 0.94353 1.00743 0.97120 1.21260 0.99990 0.91150 0.97630 0.93476 0.93871 0.93669 0.95531 0.91554 0.93225 0.85295 0.94650 0.90009 0.77135 0.86069 0.84339 0.84165 0.82682 0.82939 0.83193 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.31 71.98 0.67 -4.41 16 2 C -0.14 -6.43 5.58 30.59 0.17 -6.26 16 3 C 0.22 10.44 2.33 44.16 0.10 10.55 16 4 H 0.01 0.36 7.71 -2.39 -0.02 0.34 16 5 C -0.50 -26.15 7.54 25.60 0.19 -25.96 16 6 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.02 0.83 5.30 84.66 0.45 1.28 16 8 N -0.92 -50.71 11.31 21.45 0.24 -50.47 16 9 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.68 -26.08 6.07 -495.47 -3.01 -29.09 16 14 C 0.04 1.02 5.18 86.30 0.45 1.46 16 15 C 0.11 2.65 3.46 30.59 0.11 2.75 16 16 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 17 O -0.55 -14.27 12.78 -148.98 -1.90 -16.17 16 18 C 0.10 1.76 5.62 86.38 0.49 2.25 16 19 N -0.53 -12.03 2.81 -762.79 -2.14 -14.17 16 20 C 0.55 15.84 9.34 129.69 1.21 17.05 16 21 O -0.51 -17.41 18.00 19.02 0.34 -17.06 16 22 O -0.02 -0.43 11.25 92.77 1.04 0.62 16 23 N -0.35 -8.97 12.04 -54.05 -0.65 -9.62 16 24 C 0.30 6.60 7.43 136.27 1.01 7.61 16 25 C -0.05 -0.77 5.52 -20.08 -0.11 -0.88 16 26 C -0.10 -1.19 8.44 22.51 0.19 -1.00 16 27 C -0.11 -1.07 10.03 22.24 0.22 -0.84 16 28 C -0.09 -0.85 10.04 22.32 0.22 -0.63 16 29 C -0.12 -1.33 10.03 22.23 0.22 -1.11 16 30 C -0.08 -1.26 9.76 22.50 0.22 -1.04 16 31 H 0.05 1.69 6.54 -2.39 -0.02 1.68 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 2.02 7.04 -2.39 -0.02 2.00 16 34 H 0.03 1.07 7.64 -2.39 -0.02 1.05 16 35 H 0.07 3.42 6.04 -2.38 -0.01 3.40 16 36 H 0.26 13.74 8.31 -92.71 -0.77 12.96 16 37 H 0.33 12.64 6.37 -89.69 -0.57 12.07 16 38 H 0.04 0.99 7.64 -2.39 -0.02 0.98 16 39 H 0.08 2.19 7.93 -2.39 -0.02 2.17 16 40 H 0.38 7.86 8.61 -74.06 -0.64 7.22 16 41 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.14 1.60 4.93 -2.39 -0.01 1.59 16 43 H 0.14 1.23 5.77 -2.91 -0.02 1.21 16 44 H 0.16 0.77 8.06 -2.92 -0.02 0.75 16 45 H 0.15 0.69 8.06 -2.91 -0.02 0.66 16 46 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 47 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -67.50 389.03 1.58 -65.92 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.18 Total: 24.37 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.82 Total: 0.83 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.56 Total: -103.35 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.52 Total: -32.62 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.50 1.58 -65.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565175157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.519 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds