Wall clock time and date at job start Wed Apr 1 2020 04:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46782 * 2 1 4 4 N 1.46489 * 109.47604 * 120.00088 * 2 1 3 5 5 C 1.46499 * 120.00191 * 304.59527 * 4 2 1 6 6 C 1.50700 * 109.46986 * 263.19570 * 5 4 2 7 7 H 1.08001 * 120.00086 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00394 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00476 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99667 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46775 * 90.00092 * 10 8 6 12 12 H 1.48498 * 109.46899 * 209.99732 * 10 8 6 13 13 H 1.48495 * 109.47331 * 329.99883 * 10 8 6 14 14 C 1.34783 * 120.00198 * 124.58907 * 4 2 1 15 15 O 1.21358 * 119.99653 * 354.67558 * 14 4 2 16 16 C 1.49354 * 120.00203 * 174.67555 * 14 4 2 17 17 O 1.21382 * 119.99730 * 0.86583 * 16 14 4 18 18 N 1.34773 * 119.99782 * 180.86284 * 16 14 4 19 19 C 1.39752 * 119.99903 * 185.45024 * 18 16 14 20 20 C 1.38951 * 120.60225 * 208.41695 * 19 18 16 21 21 N 1.31569 * 120.60288 * 180.02562 * 20 19 18 22 22 C 1.32410 * 122.22048 * 0.08760 * 21 20 19 23 23 C 1.37943 * 120.43510 * 359.73918 * 22 21 20 24 24 C 1.38779 * 119.34922 * 0.27711 * 23 22 21 25 25 C 1.50530 * 121.78088 * 180.32516 * 23 22 21 26 26 O 1.42742 * 110.25635 * 344.07525 * 25 23 22 27 27 C 1.43207 * 113.08946 * 51.51190 * 26 25 23 28 28 C 1.50869 * 118.50143 * 179.46853 * 22 21 20 29 29 H 1.09003 * 109.47291 * 299.99476 * 1 2 3 30 30 H 1.09002 * 109.47575 * 59.99584 * 1 2 3 31 31 H 1.09007 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47291 * 240.00524 * 2 1 3 33 33 H 1.08998 * 109.46690 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47129 * 300.00132 * 3 2 1 35 35 H 1.08994 * 109.46985 * 60.00810 * 3 2 1 36 36 H 1.09004 * 109.47534 * 23.19382 * 5 4 2 37 37 H 1.09003 * 109.47372 * 143.19715 * 5 4 2 38 38 H 0.97004 * 120.00105 * 180.02562 * 9 8 6 39 39 H 0.97001 * 120.00358 * 5.45182 * 18 16 14 40 40 H 1.07999 * 119.69958 * 0.06692 * 20 19 18 41 41 H 1.07994 * 120.70305 * 179.85025 * 24 23 22 42 42 H 1.08996 * 109.33741 * 104.32155 * 25 23 22 43 43 H 1.09003 * 109.33795 * 223.83266 * 25 23 22 44 44 H 1.09000 * 109.62849 * 169.62184 * 27 26 25 45 45 H 1.09001 * 109.78659 * 49.13824 * 27 26 25 46 46 H 1.09007 * 109.42479 * 283.08313 * 28 22 21 47 47 H 1.08999 * 109.42541 * 42.89956 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.5835 -0.2515 2.5243 6 6 2.6230 0.6656 3.1155 7 1 3.5182 0.8978 2.5578 8 6 2.4312 1.2082 4.3684 9 7 3.3381 2.0089 4.8841 10 14 0.8831 0.8060 5.3334 11 1 1.1179 -0.4019 6.1648 12 1 0.5358 1.9517 6.2119 13 1 -0.2350 0.5484 4.3907 14 6 2.8678 -1.7300 1.0745 15 8 3.1524 -2.1555 -0.0258 16 6 3.4588 -2.3580 2.2939 17 8 3.1619 -1.9425 3.3951 18 7 4.3216 -3.3861 2.1715 19 6 4.7864 -4.0476 3.3114 20 6 6.0344 -4.6585 3.3152 21 7 6.4718 -5.2818 4.3882 22 6 5.7572 -5.3594 5.5001 23 6 4.5103 -4.7737 5.5717 24 6 4.0079 -4.1058 4.4637 25 6 3.6752 -4.8371 6.8225 26 8 4.1743 -5.8469 7.6993 27 6 5.5789 -5.7276 7.9515 28 6 6.3355 -6.1054 6.6770 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.6359 0.2805 2.4391 37 1 1.4557 -1.1201 3.1703 38 1 3.2033 2.3904 5.7658 39 1 4.6200 -3.6668 1.2923 40 1 6.6513 -4.6208 2.4296 41 1 3.0334 -3.6415 4.4948 42 1 3.7081 -3.8718 7.3277 43 1 2.6436 -5.0676 6.5565 44 1 5.8642 -6.4009 8.7598 45 1 5.8182 -4.7009 8.2285 46 1 6.2447 -7.1782 6.5063 47 1 7.3879 -5.8451 6.7896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615099488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:24 Heat of formation + Delta-G solvation = -57.447853 kcal Electronic energy + Delta-G solvation = -31524.484862 eV Core-core repulsion = 27287.313862 eV Total energy + Delta-G solvation = -4237.171000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16849 -40.23547 -38.69486 -37.79534 -36.39208 -34.95726 -32.91399 -32.81281 -32.18704 -31.49715 -29.51866 -27.96366 -26.84338 -26.13116 -25.32689 -23.67604 -23.00979 -22.64293 -21.20093 -20.27373 -19.13818 -17.79559 -17.27762 -17.02091 -16.72821 -16.55707 -16.37007 -15.83272 -15.47890 -15.08887 -14.99463 -14.75283 -14.19469 -14.08627 -13.84786 -13.64917 -13.46294 -13.42775 -12.96958 -12.83436 -12.62335 -12.57629 -12.28939 -12.00847 -11.92129 -11.88226 -11.76851 -11.21061 -11.05472 -11.00053 -10.82221 -10.69465 -10.52174 -10.35913 -10.20032 -10.15726 -9.53644 -9.52066 -9.29711 -8.79213 -8.56293 -8.14382 -7.97976 -6.11320 -4.07939 0.94215 1.24490 1.97131 2.62251 3.24275 3.29272 3.32124 3.53928 3.66713 3.80865 3.85127 4.21068 4.36156 4.48234 4.63121 4.75868 4.87163 4.93374 5.08694 5.18143 5.21059 5.26354 5.33221 5.37935 5.44114 5.48138 5.51799 5.59433 5.65840 5.79458 5.90553 5.97143 6.00560 6.13736 6.16046 6.22405 6.24748 6.47154 6.47368 6.71939 6.83887 6.87613 6.90871 7.03498 7.29539 7.51209 7.80157 7.91878 8.07956 8.37710 8.50390 8.89465 9.48809 11.01934 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003800 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.731111 B = 7367.074629 C = 8936.954286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.549 5.549 5 C 0.197 3.803 6 C -0.509 4.509 7 H 0.072 0.928 8 C 0.080 3.920 9 N -0.896 5.896 10 Si 0.871 3.129 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.512 3.488 15 O -0.556 6.556 16 C 0.492 3.508 17 O -0.435 6.435 18 N -0.653 5.653 19 C 0.114 3.886 20 C 0.079 3.921 21 N -0.463 5.463 22 C 0.107 3.893 23 C -0.145 4.145 24 C -0.078 4.078 25 C 0.105 3.895 26 O -0.374 6.374 27 C 0.057 3.943 28 C -0.096 4.096 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.263 0.737 39 H 0.420 0.580 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -12.888 -1.202 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.213 4.213 4 N -0.279 5.279 5 C 0.077 3.923 6 C -0.547 4.547 7 H 0.091 0.909 8 C -0.123 4.123 9 N -0.535 5.535 10 Si 0.698 3.302 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.437 6.437 16 C 0.274 3.726 17 O -0.302 6.302 18 N -0.301 5.301 19 C 0.016 3.984 20 C -0.083 4.083 21 N -0.171 5.171 22 C -0.030 4.030 23 C -0.148 4.148 24 C -0.106 4.106 25 C 0.028 3.972 26 O -0.292 6.292 27 C -0.020 4.020 28 C -0.134 4.134 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.258 0.742 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.864 -13.121 -0.765 13.172 hybrid contribution -1.098 0.621 -0.004 1.261 sum -0.234 -12.500 -0.770 12.526 Atomic orbital electron populations 1.22149 0.95043 1.02000 1.02630 1.21093 0.93996 0.93859 0.88084 1.22091 1.01776 0.95032 1.02400 1.48022 1.41775 1.28362 1.09736 1.20291 0.96564 0.97156 0.78257 1.21051 1.05482 1.26259 1.01956 0.90944 1.24724 0.96129 0.94529 0.96879 1.69883 1.34387 1.32003 1.17211 0.86940 0.84078 0.78344 0.80791 1.19922 1.21328 1.19230 1.19634 0.80824 0.81870 0.88244 1.90664 1.62147 1.63702 1.27143 1.20446 0.80872 0.80228 0.91026 1.90917 1.55276 1.57201 1.26843 1.43137 1.46005 1.32315 1.08692 1.18727 0.94287 0.96540 0.88858 1.22471 0.91532 0.96962 0.97295 1.67422 1.34629 1.16062 0.99009 1.20724 0.90932 0.97422 0.93890 1.20959 0.96718 0.99647 0.97454 1.21546 1.00956 0.96815 0.91296 1.21386 0.96951 0.92440 0.86446 1.88070 1.23191 1.52146 1.65809 1.22680 0.81080 1.01937 0.96310 1.20960 1.00670 1.00373 0.91347 0.91510 0.91608 0.92701 0.88921 0.92479 0.92631 0.90357 0.94807 0.92985 0.92674 0.74239 0.82290 0.82824 0.90811 0.87342 0.87880 0.92256 0.89244 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.10 37.16 0.34 -1.91 16 2 C 0.13 2.21 3.25 -67.93 -0.22 1.99 16 3 C -0.16 -2.58 8.92 37.16 0.33 -2.25 16 4 N -0.55 -10.79 2.38 -168.01 -0.40 -11.18 16 5 C 0.20 4.36 3.18 -5.19 -0.02 4.34 16 6 C -0.51 -13.35 7.38 -34.44 -0.25 -13.61 16 7 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 9 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 10 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 14 C 0.51 9.96 7.67 -11.63 -0.09 9.87 16 15 O -0.56 -10.77 15.83 5.49 0.09 -10.69 16 16 C 0.49 9.34 7.51 -11.63 -0.09 9.25 16 17 O -0.43 -9.47 9.53 5.47 0.05 -9.42 16 18 N -0.65 -10.07 5.35 -10.22 -0.05 -10.13 16 19 C 0.11 1.75 6.39 -83.63 -0.53 1.21 16 20 C 0.08 1.10 11.12 -17.40 -0.19 0.91 16 21 N -0.46 -6.79 10.22 -9.26 -0.09 -6.88 16 22 C 0.11 1.51 6.68 -82.37 -0.55 0.96 16 23 C -0.14 -2.11 5.80 -104.61 -0.61 -2.72 16 24 C -0.08 -1.25 8.43 -39.03 -0.33 -1.58 16 25 C 0.10 1.34 6.67 35.92 0.24 1.58 16 26 O -0.37 -4.63 10.81 -35.23 -0.38 -5.01 16 27 C 0.06 0.57 6.84 37.13 0.25 0.82 16 28 C -0.10 -1.02 6.24 -27.83 -0.17 -1.19 16 29 H 0.07 1.00 6.50 -51.93 -0.34 0.66 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.47 7.30 -51.93 -0.38 1.09 16 36 H 0.03 0.73 5.26 -51.93 -0.27 0.46 16 37 H 0.05 1.19 5.28 -51.93 -0.27 0.91 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.42 5.44 8.29 -40.82 -0.34 5.10 16 40 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.15 2.60 6.16 -52.49 -0.32 2.28 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -32.14 378.42 -7.49 -39.63 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.52 Total: 8.07 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -1.99 Total: 9.78 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.23 Total: -53.97 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.24 Total: -25.12 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.14 -7.49 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615099488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.818 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds