Wall clock time and date at job start Wed Apr 1 2020 04:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46782 * 2 1 4 4 N 1.46489 * 109.47604 * 120.00088 * 2 1 3 5 5 C 1.46499 * 120.00191 * 304.59527 * 4 2 1 6 6 C 1.50700 * 109.46986 * 263.19570 * 5 4 2 7 7 H 1.08001 * 120.00086 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00394 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00476 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99667 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46775 * 90.00092 * 10 8 6 12 12 H 1.48498 * 109.46899 * 209.99732 * 10 8 6 13 13 H 1.48495 * 109.47331 * 329.99883 * 10 8 6 14 14 C 1.34783 * 120.00198 * 124.58907 * 4 2 1 15 15 O 1.21358 * 119.99653 * 354.67558 * 14 4 2 16 16 C 1.49354 * 120.00203 * 174.67555 * 14 4 2 17 17 O 1.21382 * 119.99730 * 0.86583 * 16 14 4 18 18 N 1.34773 * 119.99782 * 180.86284 * 16 14 4 19 19 C 1.39752 * 119.99903 * 185.45024 * 18 16 14 20 20 C 1.38951 * 120.60225 * 208.41695 * 19 18 16 21 21 N 1.31569 * 120.60288 * 180.02562 * 20 19 18 22 22 C 1.32410 * 122.22048 * 0.08760 * 21 20 19 23 23 C 1.37943 * 120.43510 * 359.73918 * 22 21 20 24 24 C 1.38779 * 119.34922 * 0.27711 * 23 22 21 25 25 C 1.50530 * 121.78088 * 180.32516 * 23 22 21 26 26 O 1.42742 * 110.25635 * 344.07525 * 25 23 22 27 27 C 1.43207 * 113.08946 * 51.51190 * 26 25 23 28 28 C 1.50869 * 118.50143 * 179.46853 * 22 21 20 29 29 H 1.09003 * 109.47291 * 299.99476 * 1 2 3 30 30 H 1.09002 * 109.47575 * 59.99584 * 1 2 3 31 31 H 1.09007 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47291 * 240.00524 * 2 1 3 33 33 H 1.08998 * 109.46690 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47129 * 300.00132 * 3 2 1 35 35 H 1.08994 * 109.46985 * 60.00810 * 3 2 1 36 36 H 1.09004 * 109.47534 * 23.19382 * 5 4 2 37 37 H 1.09003 * 109.47372 * 143.19715 * 5 4 2 38 38 H 0.97004 * 120.00105 * 180.02562 * 9 8 6 39 39 H 0.97001 * 120.00358 * 5.45182 * 18 16 14 40 40 H 1.07999 * 119.69958 * 0.06692 * 20 19 18 41 41 H 1.07994 * 120.70305 * 179.85025 * 24 23 22 42 42 H 1.08996 * 109.33741 * 104.32155 * 25 23 22 43 43 H 1.09003 * 109.33795 * 223.83266 * 25 23 22 44 44 H 1.09000 * 109.62849 * 169.62184 * 27 26 25 45 45 H 1.09001 * 109.78659 * 49.13824 * 27 26 25 46 46 H 1.09007 * 109.42479 * 283.08313 * 28 22 21 47 47 H 1.08999 * 109.42541 * 42.89956 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.5835 -0.2515 2.5243 6 6 2.6230 0.6656 3.1155 7 1 3.5182 0.8978 2.5578 8 6 2.4312 1.2082 4.3684 9 7 3.3381 2.0089 4.8841 10 14 0.8831 0.8060 5.3334 11 1 1.1179 -0.4019 6.1648 12 1 0.5358 1.9517 6.2119 13 1 -0.2350 0.5484 4.3907 14 6 2.8678 -1.7300 1.0745 15 8 3.1524 -2.1555 -0.0258 16 6 3.4588 -2.3580 2.2939 17 8 3.1619 -1.9425 3.3951 18 7 4.3216 -3.3861 2.1715 19 6 4.7864 -4.0476 3.3114 20 6 6.0344 -4.6585 3.3152 21 7 6.4718 -5.2818 4.3882 22 6 5.7572 -5.3594 5.5001 23 6 4.5103 -4.7737 5.5717 24 6 4.0079 -4.1058 4.4637 25 6 3.6752 -4.8371 6.8225 26 8 4.1743 -5.8469 7.6993 27 6 5.5789 -5.7276 7.9515 28 6 6.3355 -6.1054 6.6770 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.6359 0.2805 2.4391 37 1 1.4557 -1.1201 3.1703 38 1 3.2033 2.3904 5.7658 39 1 4.6200 -3.6668 1.2923 40 1 6.6513 -4.6208 2.4296 41 1 3.0334 -3.6415 4.4948 42 1 3.7081 -3.8718 7.3277 43 1 2.6436 -5.0676 6.5565 44 1 5.8642 -6.4009 8.7598 45 1 5.8182 -4.7009 8.2285 46 1 6.2447 -7.1782 6.5063 47 1 7.3879 -5.8451 6.7896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615099488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:23 Heat of formation + Delta-G solvation = -79.944205 kcal Electronic energy + Delta-G solvation = -31525.460377 eV Core-core repulsion = 27287.313862 eV Total energy + Delta-G solvation = -4238.146515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44816 -41.55570 -40.00344 -38.95973 -37.91770 -36.27280 -34.76442 -34.00417 -33.21651 -33.06317 -30.64490 -29.83321 -28.08530 -27.21475 -26.60774 -24.86406 -24.51162 -24.09847 -22.40137 -21.49529 -20.54297 -19.21261 -19.06922 -18.51441 -18.02132 -17.82473 -17.52572 -16.93612 -16.86428 -16.52439 -16.28434 -15.94152 -15.76733 -15.31812 -15.16931 -15.03416 -14.94298 -14.50717 -14.45628 -14.12639 -13.96626 -13.88705 -13.66413 -13.40605 -13.27097 -13.02657 -12.86989 -12.77898 -12.65675 -12.36526 -12.24261 -12.02564 -11.95016 -11.77120 -11.73141 -11.52277 -11.22278 -10.78562 -10.62750 -10.44923 -10.17751 -9.66478 -9.28951 -8.23036 -6.22688 -0.26625 0.05446 0.51910 1.22399 1.36714 1.39428 1.45607 2.10642 2.37657 2.41741 2.59846 2.79960 3.14300 3.15474 3.29781 3.48929 3.64711 3.74103 3.91893 3.96384 4.18023 4.18459 4.24704 4.31283 4.34911 4.35148 4.51664 4.54689 4.61412 4.73632 4.79617 4.82426 4.85356 4.90979 4.94420 4.96868 5.03512 5.06373 5.17696 5.32786 5.42068 5.45614 5.53188 5.60725 5.96194 6.00402 6.10734 6.37112 6.66384 6.73133 6.79433 6.94980 7.37574 8.93914 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003800 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.731111 B = 7367.074629 C = 8936.954286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 C -0.148 4.148 4 N -0.555 5.555 5 C 0.210 3.790 6 C -0.492 4.492 7 H 0.026 0.974 8 C 0.021 3.979 9 N -0.950 5.950 10 Si 0.931 3.069 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.237 1.237 14 C 0.509 3.491 15 O -0.555 6.555 16 C 0.491 3.509 17 O -0.472 6.472 18 N -0.635 5.635 19 C 0.093 3.907 20 C 0.086 3.914 21 N -0.474 5.474 22 C 0.102 3.898 23 C -0.155 4.155 24 C -0.092 4.092 25 C 0.107 3.893 26 O -0.382 6.382 27 C 0.053 3.947 28 C -0.093 4.093 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.262 0.738 39 H 0.432 0.568 40 H 0.189 0.811 41 H 0.140 0.860 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.136 0.864 45 H 0.057 0.943 46 H 0.102 0.898 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -14.620 -1.618 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 C -0.206 4.206 4 N -0.286 5.286 5 C 0.089 3.911 6 C -0.531 4.531 7 H 0.044 0.956 8 C -0.177 4.177 9 N -0.591 5.591 10 Si 0.755 3.245 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.160 1.160 14 C 0.291 3.709 15 O -0.436 6.436 16 C 0.273 3.727 17 O -0.343 6.343 18 N -0.284 5.284 19 C -0.004 4.004 20 C -0.076 4.076 21 N -0.182 5.182 22 C -0.035 4.035 23 C -0.158 4.158 24 C -0.120 4.120 25 C 0.030 3.970 26 O -0.300 6.300 27 C -0.024 4.024 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.272 0.728 40 H 0.206 0.794 41 H 0.157 0.843 42 H 0.087 0.913 43 H 0.135 0.865 44 H 0.153 0.847 45 H 0.076 0.924 46 H 0.120 0.880 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.116 -14.895 -1.234 14.946 hybrid contribution -0.629 1.092 0.043 1.261 sum -0.745 -13.803 -1.191 13.874 Atomic orbital electron populations 1.22110 0.92442 1.02776 1.03740 1.21395 0.96090 0.93247 0.86980 1.22032 1.00108 0.95478 1.02973 1.48093 1.42034 1.28640 1.09787 1.19982 0.95559 0.96194 0.79366 1.21122 1.04555 1.26040 1.01337 0.95559 1.25547 0.99447 0.94540 0.98130 1.70045 1.37021 1.34225 1.17802 0.85971 0.81029 0.77810 0.79707 1.19963 1.21352 1.16022 1.19779 0.80713 0.81977 0.88450 1.90652 1.62061 1.63780 1.27081 1.20489 0.81144 0.80620 0.90407 1.90900 1.56976 1.58635 1.27740 1.42933 1.44789 1.31115 1.09546 1.18874 0.95196 0.97653 0.88706 1.22918 0.91011 0.95529 0.98109 1.67550 1.34769 1.16484 0.99378 1.21350 0.90649 0.96722 0.94740 1.21181 0.97346 0.99584 0.97681 1.21580 1.00789 0.97315 0.92303 1.21371 0.97272 0.92533 0.85865 1.88062 1.24652 1.51867 1.65456 1.22926 0.79734 1.02836 0.96855 1.21085 1.01280 1.00571 0.90171 0.92428 0.88421 0.92087 0.88311 0.94997 0.88859 0.92860 0.93336 0.93012 0.92891 0.72832 0.79423 0.84277 0.91251 0.86466 0.84661 0.92413 0.87952 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.10 71.98 0.66 -3.21 16 2 C 0.12 3.98 3.25 44.99 0.15 4.13 16 3 C -0.15 -4.85 8.92 71.98 0.64 -4.20 16 4 N -0.56 -21.69 2.38 -803.82 -1.91 -23.59 16 5 C 0.21 9.25 3.18 85.63 0.27 9.52 16 6 C -0.49 -26.59 7.38 25.60 0.19 -26.40 16 7 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 8 C 0.02 1.16 5.47 84.65 0.46 1.62 16 9 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 10 Si 0.93 42.58 27.47 68.60 1.88 44.47 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 13 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 14 C 0.51 19.75 7.67 87.24 0.67 20.42 16 15 O -0.55 -21.06 15.83 -3.27 -0.05 -21.11 16 16 C 0.49 18.92 7.51 87.24 0.66 19.58 16 17 O -0.47 -21.15 9.53 -3.35 -0.03 -21.18 16 18 N -0.63 -19.56 5.35 -304.60 -1.63 -21.19 16 19 C 0.09 2.85 6.39 38.28 0.24 3.09 16 20 C 0.09 2.30 11.12 84.90 0.94 3.24 16 21 N -0.47 -13.26 10.22 -183.20 -1.87 -15.13 16 22 C 0.10 2.76 6.68 42.46 0.28 3.04 16 23 C -0.16 -4.49 5.80 -19.86 -0.12 -4.61 16 24 C -0.09 -2.99 8.43 22.63 0.19 -2.80 16 25 C 0.11 2.70 6.67 71.18 0.47 3.17 16 26 O -0.38 -8.90 10.81 -148.98 -1.61 -10.51 16 27 C 0.05 0.94 6.84 71.96 0.49 1.43 16 28 C -0.09 -1.79 6.24 29.88 0.19 -1.61 16 29 H 0.06 1.57 6.50 -2.39 -0.02 1.55 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 32 H 0.10 3.06 6.91 -2.39 -0.02 3.05 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.00 7.30 -2.39 -0.02 1.98 16 36 H 0.05 2.02 5.26 -2.38 -0.01 2.01 16 37 H 0.05 2.35 5.28 -2.39 -0.01 2.33 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.43 10.89 8.29 -92.71 -0.77 10.12 16 40 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 41 H 0.14 4.91 6.16 -2.91 -0.02 4.89 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 46 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.88 378.42 1.66 -70.21 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.19 Total: 29.81 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 6.39 Total: 26.42 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -5.11 Total: -118.11 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -1.69 Total: -52.81 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.47 kcal Total: -71.88 1.66 -70.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615099488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.731 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds